Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31478 * 119.81547 * 2 1 4 4 C 1.32754 * 121.73002 * 180.02562 * 3 2 1 5 5 N 1.38362 * 119.42786 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99468 * 185.00241 * 5 4 3 7 7 C 1.46500 * 120.00319 * 5.00042 * 5 4 3 8 8 C 1.52998 * 109.47131 * 89.99993 * 7 5 4 9 9 C 1.52996 * 109.46929 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.47056 * 180.02562 * 9 8 7 11 11 C 1.46897 * 111.00213 * 170.00290 * 10 9 8 12 12 C 1.46902 * 110.99955 * 293.95644 * 10 9 8 13 13 C 1.39702 * 121.13602 * 0.02578 * 4 3 2 14 14 C 1.36559 * 119.49641 * 359.95483 * 13 4 3 15 15 C 1.40764 * 119.81468 * 180.02562 * 2 1 3 16 16 C 1.41203 * 120.56907 * 359.70692 * 15 2 1 17 17 H 1.07996 * 119.99826 * 334.87335 * 16 15 2 18 18 C 1.39873 * 119.99948 * 154.87638 * 16 15 2 19 19 N 1.30906 * 119.99751 * 344.00717 * 18 16 15 20 20 Si 1.86797 * 120.00021 * 164.00571 * 18 16 15 21 21 H 1.48493 * 109.46901 * 89.99810 * 20 18 16 22 22 H 1.48498 * 109.47146 * 210.00164 * 20 18 16 23 23 H 1.48509 * 109.46885 * 330.00149 * 20 18 16 24 24 H 1.09003 * 109.47736 * 269.97640 * 1 2 3 25 25 H 1.09001 * 109.47456 * 29.98099 * 1 2 3 26 26 H 1.09002 * 109.47551 * 149.97606 * 1 2 3 27 27 H 1.09004 * 109.47177 * 90.00399 * 6 5 4 28 28 H 1.09010 * 109.46571 * 209.99693 * 6 5 4 29 29 H 1.08992 * 109.47064 * 329.99597 * 6 5 4 30 30 H 1.09004 * 109.47084 * 210.00330 * 7 5 4 31 31 H 1.09001 * 109.46930 * 329.99809 * 7 5 4 32 32 H 1.08992 * 109.46981 * 300.00217 * 8 7 5 33 33 H 1.09002 * 109.46699 * 60.00429 * 8 7 5 34 34 H 1.09002 * 109.47417 * 299.99802 * 9 8 7 35 35 H 1.08995 * 109.47179 * 60.00328 * 9 8 7 36 36 H 1.08992 * 109.47381 * 59.99817 * 11 10 9 37 37 H 1.09006 * 109.47075 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.46947 * 299.99799 * 11 10 9 39 39 H 1.08994 * 109.47293 * 60.00041 * 12 10 9 40 40 H 1.09006 * 109.47252 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.46823 * 299.99764 * 12 10 9 42 42 H 1.08005 * 120.25370 * 179.97438 * 13 4 3 43 43 H 1.08002 * 120.79436 * 180.02562 * 14 13 4 44 44 H 0.96996 * 119.99679 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1407 0.0000 4 6 3.4875 1.1851 -0.0005 5 7 4.1266 2.4122 0.0001 6 6 5.5860 2.4780 -0.1111 7 6 3.3442 3.6457 0.1118 8 6 3.1839 4.0161 1.5876 9 6 2.3673 5.3046 1.7042 10 7 2.2139 5.6606 3.1211 11 6 1.6446 7.0069 3.2671 12 6 1.3982 4.6646 3.8288 13 6 4.2494 0.0141 -0.0016 14 6 3.6198 -1.1977 -0.0012 15 6 2.2068 -1.2213 -0.0005 16 6 1.5090 -2.4489 0.0051 17 1 0.5078 -2.4990 0.4068 18 6 2.1146 -3.5999 -0.5095 19 7 3.1757 -3.4974 -1.2692 20 14 1.4092 -5.2834 -0.1125 21 1 0.4036 -5.6536 -1.1405 22 1 2.5021 -6.2887 -0.1045 23 1 0.7611 -5.2462 1.2232 24 1 -0.3635 -0.0004 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 5.8680 2.5364 -1.1624 28 1 5.9508 3.3617 0.4126 29 1 6.0248 1.5850 0.3338 30 1 3.8594 4.4515 -0.4112 31 1 2.3610 3.4939 -0.3336 32 1 2.6687 3.2104 2.1104 33 1 4.1671 4.1680 2.0329 34 1 2.8829 6.1102 1.1814 35 1 1.3841 5.1532 1.2588 36 1 0.6651 7.0409 2.7902 37 1 1.5422 7.2452 4.3258 38 1 2.3047 7.7337 2.7937 39 1 1.8791 3.6887 3.7637 40 1 1.3009 4.9522 4.8757 41 1 0.4098 4.6138 3.3722 42 1 5.3281 0.0668 -0.0024 43 1 4.1882 -2.1161 -0.0016 44 1 3.5958 -4.2956 -1.6257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163598384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = 21.952402 kcal Electronic energy + Delta-G solvation = -21672.692381 eV Core-core repulsion = 18624.151812 eV Total energy + Delta-G solvation = -3048.540568 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60122 -38.79231 -37.48356 -35.49170 -33.69270 -32.46056 -31.93898 -28.90784 -28.50361 -27.77318 -27.24361 -25.24064 -23.72055 -22.21701 -21.72885 -21.44127 -19.04055 -17.93596 -17.25032 -16.73888 -16.43511 -16.18173 -15.95295 -15.46682 -15.23281 -15.00836 -14.70531 -14.48187 -14.38913 -13.65438 -13.48980 -13.31597 -13.20739 -13.10098 -12.93151 -12.82528 -12.72835 -12.70139 -12.57233 -12.52990 -12.29341 -12.19205 -12.09970 -11.52605 -11.43122 -11.11832 -10.21294 -9.92388 -9.77808 -9.33619 -8.59043 -8.24968 -6.06286 0.90707 1.15859 1.41775 1.52889 1.59142 2.25633 2.45919 2.84793 3.06748 3.78032 3.95866 4.05290 4.21574 4.24604 4.39952 4.48481 4.51801 4.55107 4.59677 4.65291 4.67873 4.70245 4.75756 4.79351 4.88463 4.92432 4.97237 4.99434 5.01025 5.01349 5.06676 5.22592 5.25165 5.36044 5.43628 5.58203 5.68765 5.93557 6.03582 6.04489 6.12514 6.52374 6.61970 6.83761 6.97422 7.09641 7.90303 8.43666 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.004035 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.806270 B = 6937.658882 C = 7700.736077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.525 5.525 4 C 0.289 3.711 5 N -0.630 5.630 6 C 0.105 3.895 7 C 0.144 3.856 8 C -0.113 4.113 9 C 0.065 3.935 10 N -0.561 5.561 11 C 0.024 3.976 12 C 0.025 3.975 13 C -0.219 4.219 14 C -0.110 4.110 15 C -0.001 4.001 16 C -0.483 4.483 17 H 0.081 0.919 18 C 0.032 3.968 19 N -0.841 5.841 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.259 1.259 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.022 0.978 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.578 13.455 5.061 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 N -0.242 5.242 4 C 0.056 3.944 5 N -0.349 5.349 6 C -0.038 4.038 7 C 0.020 3.980 8 C -0.153 4.153 9 C -0.064 4.064 10 N -0.285 5.285 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.242 4.242 14 C -0.137 4.137 15 C -0.006 4.006 16 C -0.514 4.514 17 H 0.099 0.901 18 C -0.181 4.181 19 N -0.469 5.469 20 Si 0.800 3.200 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.183 1.183 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.040 0.960 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.799 14.204 5.125 15.121 hybrid contribution -0.408 -1.919 -0.392 2.001 sum 0.391 12.285 4.734 13.171 Atomic orbital electron populations 1.20199 0.89215 1.01396 1.01060 1.21277 0.96365 0.87400 1.06854 1.66462 1.07910 1.30485 1.19345 1.18041 0.88285 0.86035 1.02023 1.45748 1.05477 1.01732 1.81967 1.21591 0.78658 1.02745 1.00804 1.21072 0.96116 0.85455 0.95344 1.21807 1.00044 0.96140 0.97308 1.22013 0.98503 0.97539 0.88319 1.62016 1.50448 1.03464 1.12536 1.22438 0.97901 0.89288 1.02728 1.22380 0.94842 0.95893 0.99250 1.21082 0.99644 0.92429 1.11084 1.21290 0.95082 0.96517 1.00777 1.18491 0.92772 0.94104 0.95203 1.19547 1.02126 0.92819 1.36895 0.90095 1.26675 0.94657 1.04680 0.92057 1.69885 1.19806 1.32562 1.24618 0.85254 0.78662 0.76290 0.79803 1.18902 1.19594 1.18297 0.92232 0.92315 0.91662 0.93781 0.89570 0.92303 0.89694 0.92637 0.94766 0.91763 0.89087 0.95533 0.95654 0.90497 0.90288 0.92842 0.90156 0.95966 0.86060 0.87004 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.62 9.57 71.23 0.68 -1.94 16 2 C 0.02 0.98 6.86 43.23 0.30 1.28 16 3 N -0.53 -25.67 8.94 -179.37 -1.60 -27.27 16 4 C 0.29 13.29 7.37 133.31 0.98 14.28 16 5 N -0.63 -22.79 2.97 -728.57 -2.17 -24.95 16 6 C 0.11 2.94 10.26 127.77 1.31 4.25 16 7 C 0.14 4.44 5.46 86.38 0.47 4.91 16 8 C -0.11 -3.25 5.46 30.59 0.17 -3.09 16 9 C 0.06 1.53 4.96 86.30 0.43 1.96 16 10 N -0.56 -12.93 5.02 -948.86 -4.76 -17.70 16 11 C 0.02 0.42 9.57 127.69 1.22 1.64 16 12 C 0.02 0.59 9.32 127.69 1.19 1.78 16 13 C -0.22 -10.44 9.19 22.23 0.20 -10.24 16 14 C -0.11 -5.90 8.74 22.64 0.20 -5.70 16 15 C 0.00 -0.04 5.58 -21.18 -0.12 -0.15 16 16 C -0.48 -25.87 8.14 23.39 0.19 -25.68 16 17 H 0.08 4.13 6.87 -2.91 -0.02 4.11 16 18 C 0.03 1.61 5.19 85.23 0.44 2.06 16 19 N -0.84 -44.53 10.94 21.82 0.24 -44.29 16 20 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 2.79 6.77 -2.39 -0.02 2.77 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.87 8.07 -2.38 -0.02 1.85 16 29 H 0.06 1.70 5.93 -2.39 -0.01 1.68 16 30 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 31 H 0.06 1.98 7.27 -2.39 -0.02 1.96 16 32 H 0.03 1.21 6.55 -2.39 -0.02 1.20 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.78 8.06 -2.39 -0.02 1.76 16 35 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 36 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 1.14 8.12 -2.38 -0.02 1.12 16 38 H 0.08 1.15 8.12 -2.38 -0.02 1.13 16 39 H 0.05 1.48 6.47 -2.39 -0.02 1.47 16 40 H 0.08 1.59 8.12 -2.38 -0.02 1.57 16 41 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.12 5.07 5.97 -2.91 -0.02 5.05 16 43 H 0.11 6.21 6.25 -2.91 -0.02 6.19 16 44 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 Total: -1.00 -62.87 350.37 2.37 -60.50 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.97 Total: 27.71 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 7.67 Total: -14.65 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -8.29 Total: -114.21 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -62.87 2.37 -60.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163598384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.449 kcal (2) G-P(sol) polarization free energy of solvation -62.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds