Wall clock time and date at job start Mon Mar 30 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47152 * 2 1 4 4 C 1.50691 * 109.47185 * 120.00218 * 2 1 3 5 5 N 1.31733 * 119.07758 * 299.99794 * 4 2 1 6 6 C 1.33034 * 120.68897 * 180.02562 * 5 4 2 7 7 N 1.38519 * 120.54032 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99804 * 4.97228 * 7 6 5 9 9 C 1.36930 * 120.00202 * 184.97652 * 7 6 5 10 10 H 1.07999 * 119.99939 * 23.94810 * 9 7 6 11 11 C 1.38851 * 120.00267 * 203.94935 * 9 7 6 12 12 N 1.31540 * 119.99721 * 10.48869 * 11 9 7 13 13 Si 1.86795 * 120.00236 * 190.48303 * 11 9 7 14 14 H 1.48508 * 109.47067 * 60.00367 * 13 11 9 15 15 H 1.48501 * 109.47408 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47446 * 300.00349 * 13 11 9 17 17 C 1.39706 * 118.92387 * 359.97438 * 6 5 4 18 18 C 1.38138 * 118.32064 * 0.02562 * 17 6 5 19 19 C 1.50698 * 120.40009 * 180.02562 * 18 17 6 20 20 C 1.52996 * 109.47473 * 74.99568 * 19 18 17 21 21 C 1.53007 * 109.47002 * 194.99752 * 19 18 17 22 22 C 1.53000 * 109.47265 * 314.99331 * 19 18 17 23 23 N 1.31797 * 119.07851 * 120.27114 * 4 2 1 24 24 H 1.09001 * 109.46952 * 59.99655 * 1 2 3 25 25 H 1.08990 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46491 * 300.00148 * 1 2 3 27 27 H 1.09000 * 109.46862 * 240.00235 * 2 1 3 28 28 H 1.09000 * 109.46748 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46810 * 300.00199 * 3 2 1 30 30 H 1.08993 * 109.47081 * 59.99953 * 3 2 1 31 31 H 1.09003 * 109.47403 * 93.79354 * 8 7 6 32 32 H 1.09004 * 109.46926 * 213.79103 * 8 7 6 33 33 H 1.08998 * 109.47550 * 333.78808 * 8 7 6 34 34 H 0.97000 * 119.99652 * 180.02562 * 12 11 9 35 35 H 1.08005 * 120.84190 * 180.02562 * 17 6 5 36 36 H 1.09006 * 109.47016 * 60.00047 * 20 19 18 37 37 H 1.09000 * 109.46931 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47132 * 299.99950 * 20 19 18 39 39 H 1.09000 * 109.47077 * 59.99115 * 21 19 18 40 40 H 1.09001 * 109.47094 * 180.02562 * 21 19 18 41 41 H 1.08998 * 109.46835 * 299.99739 * 21 19 18 42 42 H 1.09002 * 109.46893 * 60.00323 * 22 19 18 43 43 H 1.09000 * 109.47436 * 180.02562 * 22 19 18 44 44 H 1.09007 * 109.46997 * 300.00201 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7031 -0.2447 2.4178 6 6 2.1292 -0.8464 3.5252 7 7 1.7806 -0.3544 4.7722 8 6 0.8489 0.7709 4.8814 9 6 2.3069 -0.9196 5.9029 10 1 3.2441 -1.4541 5.8534 11 6 1.6358 -0.8057 7.1131 12 7 0.4058 -0.3405 7.1417 13 14 2.4796 -1.3132 8.7005 14 1 3.7057 -0.4974 8.8921 15 1 1.5569 -1.0949 9.8434 16 1 2.8475 -2.7500 8.6281 17 6 2.9330 -1.9832 3.4099 18 6 3.2521 -2.4346 2.1440 19 6 4.1155 -3.6567 1.9653 20 6 3.2953 -4.9105 2.2753 21 6 4.6175 -3.7198 0.5213 22 6 5.3105 -3.5806 2.9176 23 7 2.7933 -1.7771 1.0883 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 -0.1644 0.3920 5.0149 32 1 1.1222 1.3870 5.7381 33 1 0.8957 1.3710 3.9727 34 1 -0.0629 -0.2606 7.9872 35 1 3.2957 -2.4962 4.2884 36 1 2.4439 -4.9647 1.5968 37 1 3.9198 -5.7944 2.1456 38 1 2.9377 -4.8655 3.3041 39 1 5.2017 -2.8265 0.3003 40 1 5.2416 -4.6040 0.3919 41 1 3.7661 -3.7740 -0.1572 42 1 4.9530 -3.5357 3.9464 43 1 5.9353 -4.4644 2.7881 44 1 5.8949 -2.6874 2.6967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:11 Heat of formation + Delta-G solvation = 20.132278 kcal Electronic energy + Delta-G solvation = -22580.262383 eV Core-core repulsion = 19531.642888 eV Total energy + Delta-G solvation = -3048.619495 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73642 -38.56528 -37.99547 -35.66721 -34.16026 -32.48388 -31.18764 -28.47762 -28.14251 -28.08773 -27.97093 -26.34337 -24.90415 -23.50893 -21.81453 -19.79487 -19.15056 -18.35991 -17.62393 -16.55818 -15.99328 -15.85352 -15.65846 -15.36392 -15.02953 -15.00021 -14.88915 -14.57427 -14.48803 -13.64519 -13.36410 -13.14546 -13.07003 -12.96098 -12.87816 -12.74757 -12.65596 -12.52475 -12.41130 -12.18176 -12.07464 -11.96498 -11.92976 -11.81580 -11.73964 -11.53372 -10.96637 -10.89910 -10.21624 -9.66872 -8.99935 -8.38855 -5.95485 0.53337 0.79349 1.39047 1.46445 1.50384 2.16718 2.83001 2.85933 3.26150 3.32761 3.55075 3.97634 4.08780 4.14692 4.27005 4.35255 4.43947 4.44607 4.67922 4.73018 4.79332 4.83429 4.86553 4.87417 4.92123 4.93635 5.00621 5.01861 5.02414 5.05604 5.07701 5.20334 5.25180 5.26649 5.26823 5.32383 5.40133 5.45289 5.51231 5.59491 5.80823 6.09524 6.38650 6.73758 7.23104 7.46197 7.89926 8.60364 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.006958 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.631681 B = 4023.268753 C = 5634.156159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.019 4.019 3 C -0.127 4.127 4 C 0.344 3.656 5 N -0.609 5.609 6 C 0.369 3.631 7 N -0.432 5.432 8 C 0.147 3.853 9 C -0.336 4.336 10 H 0.097 0.903 11 C -0.007 4.007 12 N -0.898 5.898 13 Si 0.998 3.002 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.263 1.263 17 C -0.316 4.316 18 C 0.200 3.800 19 C -0.019 4.019 20 C -0.128 4.128 21 C -0.112 4.112 22 C -0.133 4.133 23 N -0.598 5.598 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.274 0.726 35 H 0.123 0.877 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.089 0.911 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 -3.749 -9.749 11.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.040 4.040 3 C -0.185 4.185 4 C 0.073 3.927 5 N -0.338 5.338 6 C 0.123 3.877 7 N -0.124 5.124 8 C 0.004 3.996 9 C -0.465 4.465 10 H 0.115 0.885 11 C -0.210 4.210 12 N -0.534 5.534 13 Si 0.820 3.180 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.188 1.188 17 C -0.347 4.347 18 C 0.060 3.940 19 C -0.020 4.020 20 C -0.186 4.186 21 C -0.169 4.169 22 C -0.190 4.190 23 N -0.322 5.322 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.737 -3.129 -10.029 11.525 hybrid contribution 0.135 -0.299 2.103 2.129 sum 4.872 -3.428 -7.926 9.915 Atomic orbital electron populations 1.21677 0.93028 1.01258 1.02671 1.19946 0.96583 0.95830 0.91597 1.21674 1.00124 0.94059 1.02688 1.23225 0.88502 0.88829 0.92169 1.67564 1.31946 1.36241 0.98018 1.18981 0.92537 0.89804 0.86349 1.42553 1.40329 1.28271 1.01274 1.21096 0.92242 0.87752 0.98541 1.19832 1.05445 1.35816 0.85360 0.88547 1.26318 0.95478 0.96431 1.02773 1.70187 1.10786 1.44096 1.28308 0.84910 0.77911 0.79257 0.75884 1.19020 1.20201 1.18766 1.21649 1.11616 1.01977 0.99459 1.21487 0.91187 0.93907 0.87442 1.19584 0.93846 0.90236 0.98335 1.21790 0.99675 0.96329 1.00806 1.21539 1.00740 1.01379 0.93231 1.21862 0.96378 1.02552 0.98228 1.68022 1.18608 1.11894 1.33668 0.89108 0.94103 0.93662 0.88191 0.93898 0.89159 0.93597 0.94582 0.93418 0.93012 0.91622 0.85913 0.93532 0.89103 0.93769 0.93813 0.90564 0.92748 0.93288 0.89259 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.09 71.98 0.65 -3.03 16 2 C -0.02 -0.60 3.25 -11.54 -0.04 -0.64 16 3 C -0.13 -3.57 9.09 71.98 0.65 -2.91 16 4 C 0.34 14.15 6.34 138.77 0.88 15.03 16 5 N -0.61 -28.51 8.54 -185.38 -1.58 -30.10 16 6 C 0.37 18.64 7.36 133.18 0.98 19.62 16 7 N -0.43 -23.05 3.11 -540.58 -1.68 -24.73 16 8 C 0.15 7.49 8.79 127.77 1.12 8.61 16 9 C -0.34 -17.86 8.95 84.04 0.75 -17.11 16 10 H 0.10 4.96 6.40 -2.91 -0.02 4.94 16 11 C -0.01 -0.36 5.14 84.88 0.44 0.08 16 12 N -0.90 -48.09 10.64 21.65 0.23 -47.86 16 13 Si 1.00 40.05 29.57 68.60 2.03 42.08 16 14 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 15 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 C -0.32 -14.58 8.36 22.60 0.19 -14.39 16 18 C 0.20 8.02 5.56 42.42 0.24 8.25 16 19 C -0.02 -0.58 0.88 -52.93 -0.05 -0.63 16 20 C -0.13 -3.53 8.41 71.98 0.61 -2.93 16 21 C -0.11 -2.93 7.83 71.98 0.56 -2.37 16 22 C -0.13 -3.62 8.10 71.98 0.58 -3.04 16 23 N -0.60 -24.28 9.06 -176.27 -1.60 -25.88 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.48 8.01 -2.39 -0.02 1.46 16 27 H 0.10 2.83 8.09 -2.39 -0.02 2.81 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.04 1.46 8.01 -2.39 -0.02 1.44 16 31 H 0.04 1.93 7.41 -2.39 -0.02 1.92 16 32 H 0.05 2.45 7.25 -2.39 -0.02 2.44 16 33 H 0.05 2.47 7.22 -2.39 -0.02 2.45 16 34 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.12 5.67 5.20 -2.91 -0.02 5.65 16 36 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 39 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.52 7.89 -2.39 -0.02 1.50 16 42 H 0.05 1.46 6.79 -2.39 -0.02 1.44 16 43 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -61.50 349.48 5.93 -55.57 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.96 Total: 26.36 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 7.57 Total: 4.55 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -4.63 Total: -128.56 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -61.50 5.93 -55.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.705 kcal (2) G-P(sol) polarization free energy of solvation -61.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds