Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47124 * 2 1 4 4 C 1.53004 * 109.47367 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47008 * 179.97438 * 4 3 2 6 6 C 1.38171 * 120.39873 * 124.17080 * 5 4 3 7 7 C 1.39673 * 118.31962 * 180.02562 * 6 5 4 8 8 N 1.38527 * 120.53607 * 179.97438 * 7 6 5 9 9 C 1.36932 * 120.00206 * 9.23370 * 8 7 6 10 10 H 1.08003 * 119.99692 * 31.86004 * 9 8 7 11 11 C 1.38849 * 119.99838 * 211.59154 * 9 8 7 12 12 N 1.31538 * 119.99247 * 207.07083 * 11 9 8 13 13 Si 1.86799 * 120.00395 * 27.06599 * 11 9 8 14 14 H 1.48500 * 109.47099 * 4.38932 * 13 11 9 15 15 H 1.48491 * 109.46982 * 124.38844 * 13 11 9 16 16 H 1.48498 * 109.47191 * 244.39335 * 13 11 9 17 17 C 1.46505 * 119.99609 * 189.23290 * 8 7 6 18 18 C 1.52999 * 109.46988 * 270.00184 * 17 8 7 19 19 C 1.53000 * 109.47110 * 180.02562 * 18 17 8 20 20 C 1.52999 * 109.47110 * 179.97438 * 19 18 17 21 21 N 1.33062 * 118.92486 * 0.25665 * 7 6 5 22 22 C 1.31705 * 120.68546 * 359.48617 * 21 7 6 23 23 N 1.31830 * 121.84722 * 0.52362 * 22 21 7 24 24 H 1.09004 * 109.46598 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47493 * 300.00412 * 1 2 3 26 26 H 1.09004 * 109.46597 * 60.01042 * 1 2 3 27 27 H 1.09002 * 109.47764 * 239.99135 * 2 1 3 28 28 H 1.09012 * 109.46766 * 119.99224 * 2 1 3 29 29 H 1.09002 * 109.47506 * 59.98977 * 3 2 1 30 30 H 1.09009 * 109.47162 * 299.99316 * 3 2 1 31 31 H 1.08999 * 109.47188 * 59.99626 * 4 3 2 32 32 H 1.09000 * 109.46435 * 299.99616 * 4 3 2 33 33 H 1.08002 * 120.84115 * 0.04126 * 6 5 4 34 34 H 0.96991 * 120.00366 * 359.97438 * 12 11 9 35 35 H 1.09000 * 109.46805 * 30.00287 * 17 8 7 36 36 H 1.08998 * 109.46588 * 149.99893 * 17 8 7 37 37 H 1.09005 * 109.46736 * 300.00272 * 18 17 8 38 38 H 1.08998 * 109.47093 * 59.99661 * 18 17 8 39 39 H 1.08998 * 109.46870 * 300.00129 * 19 18 17 40 40 H 1.08998 * 109.46872 * 59.99460 * 19 18 17 41 41 H 1.08993 * 109.47254 * 59.99941 * 20 19 18 42 42 H 1.08999 * 109.46926 * 179.97438 * 20 19 18 43 43 H 1.08996 * 109.46852 * 299.99727 * 20 19 18 44 44 H 1.08002 * 119.07510 * 180.24801 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.9360 3.3001 0.9861 7 6 5.3739 4.6257 0.9439 8 7 6.2398 5.1120 1.9097 9 6 6.8218 4.2525 2.8028 10 1 7.0529 3.2401 2.5058 11 6 7.1200 4.6842 4.0883 12 7 8.1026 4.1230 4.7590 13 14 6.1259 6.0617 4.8652 14 1 5.0189 6.4481 3.9539 15 1 5.5631 5.5974 6.1585 16 1 7.0054 7.2349 5.1006 17 6 6.5329 6.5459 1.9755 18 6 7.7451 6.8596 1.0964 19 6 8.0516 8.3570 1.1656 20 6 9.2642 8.6705 0.2869 21 7 4.9415 5.4155 -0.0358 22 6 4.1218 4.9550 -0.9581 23 7 3.6904 3.7093 -0.9461 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8902 29 1 1.6765 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.9338 0.9285 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 5.2644 2.6332 1.7696 34 1 8.6185 3.4076 4.3558 35 1 5.6704 7.1097 1.6199 36 1 6.7496 6.8254 3.0065 37 1 8.6075 6.2957 1.4521 38 1 7.5283 6.5800 0.0654 39 1 7.1893 8.9211 0.8102 40 1 8.2684 8.6361 2.1967 41 1 9.0477 8.3913 -0.7441 42 1 9.4822 9.7374 0.3359 43 1 10.1263 8.1064 0.6428 44 1 3.7902 5.6177 -1.7438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = 20.859260 kcal Electronic energy + Delta-G solvation = -21644.138992 eV Core-core repulsion = 18595.551021 eV Total energy + Delta-G solvation = -3048.587971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92196 -37.25376 -35.68483 -34.33772 -32.93423 -32.20735 -30.58351 -29.28752 -27.99627 -24.94300 -24.49022 -23.06589 -22.51658 -21.00922 -20.77372 -20.08423 -17.99693 -16.66102 -16.35139 -15.30451 -15.03662 -14.59865 -14.40310 -14.25248 -13.97129 -13.87972 -13.46469 -13.29738 -12.96283 -12.84166 -12.59731 -12.45982 -12.16142 -11.93494 -11.40888 -11.25899 -11.11645 -11.01328 -10.76382 -10.69687 -10.66466 -10.41362 -10.27737 -10.08808 -9.94766 -9.65254 -9.50586 -9.04311 -8.67859 -8.14033 -7.41363 -6.99963 -4.10179 2.08422 2.37565 3.09890 3.23414 3.33666 4.03133 4.15412 4.65068 4.82374 4.95863 5.03384 5.09598 5.23395 5.27343 5.32734 5.38399 5.48670 5.53942 5.70923 5.73727 5.82277 5.88717 5.96286 6.05350 6.06287 6.09788 6.11313 6.18592 6.19336 6.22135 6.28910 6.34509 6.45045 6.46176 6.54905 6.60423 6.72426 6.76477 6.88544 7.35421 7.66819 7.78274 8.05239 8.42069 8.90757 9.12729 9.50981 10.31368 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.004916 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.978345 B = 5693.820776 C = 6769.824027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.062 4.062 5 C 0.181 3.819 6 C -0.285 4.285 7 C 0.389 3.611 8 N -0.421 5.421 9 C -0.401 4.401 10 H 0.092 0.908 11 C 0.028 3.972 12 N -0.852 5.852 13 Si 1.049 2.951 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.278 1.278 17 C 0.124 3.876 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.148 4.148 21 N -0.605 5.605 22 C 0.325 3.675 23 N -0.602 5.602 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.280 0.720 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 0.203 -6.682 9.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.100 4.100 5 C 0.043 3.957 6 C -0.315 4.315 7 C 0.144 3.856 8 N -0.113 5.113 9 C -0.529 4.529 10 H 0.109 0.891 11 C -0.184 4.184 12 N -0.482 5.482 13 Si 0.877 3.123 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.205 1.205 17 C 0.000 4.000 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.205 4.205 21 N -0.333 5.333 22 C 0.033 3.967 23 N -0.328 5.328 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.356 1.739 -5.712 8.720 hybrid contribution 0.661 -1.514 -0.633 1.769 sum -5.695 0.225 -6.344 8.528 Atomic orbital electron populations 1.21763 0.96175 1.01114 1.01810 1.21558 0.95631 0.97303 1.01765 1.21471 0.94260 0.96040 1.02758 1.20435 0.95935 0.91330 1.02343 1.20960 0.90715 0.94967 0.89087 1.21751 1.07478 0.97778 1.04525 1.18709 0.87260 0.89673 0.89935 1.42643 1.36164 1.05780 1.26714 1.20445 1.40765 0.98003 0.93721 0.89087 1.26400 0.96172 1.02887 0.92924 1.70846 1.13177 1.22409 1.41782 0.83933 0.76771 0.75493 0.76146 1.20287 1.21251 1.20451 1.21578 0.97638 0.82658 0.98094 1.21872 0.98768 0.95104 1.00700 1.21477 0.98038 0.96668 0.99907 1.21732 0.98325 1.00555 0.99899 1.67841 1.19868 1.39045 1.06571 1.24119 0.88968 0.90019 0.93618 1.68003 1.31510 1.04859 1.28407 0.93132 0.92858 0.92785 0.92155 0.92200 0.92378 0.90901 0.90716 0.90892 0.85142 0.90945 0.90818 0.92755 0.91700 0.91638 0.92081 0.92253 0.92939 0.93200 0.92892 0.81001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.55 16 3 C -0.11 -1.48 5.09 -26.73 -0.14 -1.61 16 4 C -0.06 -0.96 5.64 -27.88 -0.16 -1.12 16 5 C 0.18 3.54 6.19 -82.32 -0.51 3.03 16 6 C -0.28 -6.29 8.94 -39.07 -0.35 -6.64 16 7 C 0.39 9.07 7.32 -154.71 -1.13 7.94 16 8 N -0.42 -10.07 2.36 -114.83 -0.27 -10.35 16 9 C -0.40 -10.32 8.80 -15.05 -0.13 -10.45 16 10 H 0.09 2.48 7.14 -52.48 -0.37 2.10 16 11 C 0.03 0.72 5.26 -17.45 -0.09 0.63 16 12 N -0.85 -23.02 13.70 55.49 0.76 -22.26 16 13 Si 1.05 23.59 25.41 -169.99 -4.32 19.27 16 14 H -0.28 -6.14 6.51 56.52 0.37 -5.77 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 17 C 0.12 2.65 3.89 -4.04 -0.02 2.63 16 18 C -0.13 -2.39 5.54 -26.73 -0.15 -2.54 16 19 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 20 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 21 N -0.60 -13.10 9.38 -13.79 -0.13 -13.23 16 22 C 0.32 6.28 12.28 -92.20 -1.13 5.14 16 23 N -0.60 -11.81 10.06 -10.87 -0.11 -11.92 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.06 7.99 -51.92 -0.42 0.64 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 33 H 0.13 2.93 6.65 -52.49 -0.35 2.58 16 34 H 0.28 7.45 8.73 -40.82 -0.36 7.09 16 35 H 0.07 1.54 7.55 -51.93 -0.39 1.14 16 36 H 0.05 1.18 3.18 -51.93 -0.17 1.02 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.17 2.67 8.06 -52.49 -0.42 2.24 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -27.36 353.50 -9.76 -37.12 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.64 Total: 5.38 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.39 Total: -9.34 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.25 Total: -57.76 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.32 Total: 19.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.36 -9.76 -37.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.983 kcal (2) G-P(sol) polarization free energy of solvation -27.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds