Wall clock time and date at job start Mon Mar 30 2020 02:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47124 * 2 1 4 4 C 1.53004 * 109.47367 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47008 * 179.97438 * 4 3 2 6 6 C 1.38171 * 120.39873 * 124.17080 * 5 4 3 7 7 C 1.39673 * 118.31962 * 180.02562 * 6 5 4 8 8 N 1.38527 * 120.53607 * 179.97438 * 7 6 5 9 9 C 1.36932 * 120.00206 * 9.23370 * 8 7 6 10 10 H 1.08003 * 119.99692 * 31.86004 * 9 8 7 11 11 C 1.38849 * 119.99838 * 211.59154 * 9 8 7 12 12 N 1.31538 * 119.99247 * 207.07083 * 11 9 8 13 13 Si 1.86799 * 120.00395 * 27.06599 * 11 9 8 14 14 H 1.48500 * 109.47099 * 4.38932 * 13 11 9 15 15 H 1.48491 * 109.46982 * 124.38844 * 13 11 9 16 16 H 1.48498 * 109.47191 * 244.39335 * 13 11 9 17 17 C 1.46505 * 119.99609 * 189.23290 * 8 7 6 18 18 C 1.52999 * 109.46988 * 270.00184 * 17 8 7 19 19 C 1.53000 * 109.47110 * 180.02562 * 18 17 8 20 20 C 1.52999 * 109.47110 * 179.97438 * 19 18 17 21 21 N 1.33062 * 118.92486 * 0.25665 * 7 6 5 22 22 C 1.31705 * 120.68546 * 359.48617 * 21 7 6 23 23 N 1.31830 * 121.84722 * 0.52362 * 22 21 7 24 24 H 1.09004 * 109.46598 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47493 * 300.00412 * 1 2 3 26 26 H 1.09004 * 109.46597 * 60.01042 * 1 2 3 27 27 H 1.09002 * 109.47764 * 239.99135 * 2 1 3 28 28 H 1.09012 * 109.46766 * 119.99224 * 2 1 3 29 29 H 1.09002 * 109.47506 * 59.98977 * 3 2 1 30 30 H 1.09009 * 109.47162 * 299.99316 * 3 2 1 31 31 H 1.08999 * 109.47188 * 59.99626 * 4 3 2 32 32 H 1.09000 * 109.46435 * 299.99616 * 4 3 2 33 33 H 1.08002 * 120.84115 * 0.04126 * 6 5 4 34 34 H 0.96991 * 120.00366 * 359.97438 * 12 11 9 35 35 H 1.09000 * 109.46805 * 30.00287 * 17 8 7 36 36 H 1.08998 * 109.46588 * 149.99893 * 17 8 7 37 37 H 1.09005 * 109.46736 * 300.00272 * 18 17 8 38 38 H 1.08998 * 109.47093 * 59.99661 * 18 17 8 39 39 H 1.08998 * 109.46870 * 300.00129 * 19 18 17 40 40 H 1.08998 * 109.46872 * 59.99460 * 19 18 17 41 41 H 1.08993 * 109.47254 * 59.99941 * 20 19 18 42 42 H 1.08999 * 109.46926 * 179.97438 * 20 19 18 43 43 H 1.08996 * 109.46852 * 299.99727 * 20 19 18 44 44 H 1.08002 * 119.07510 * 180.24801 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.9360 3.3001 0.9861 7 6 5.3739 4.6257 0.9439 8 7 6.2398 5.1120 1.9097 9 6 6.8218 4.2525 2.8028 10 1 7.0529 3.2401 2.5058 11 6 7.1200 4.6842 4.0883 12 7 8.1026 4.1230 4.7590 13 14 6.1259 6.0617 4.8652 14 1 5.0189 6.4481 3.9539 15 1 5.5631 5.5974 6.1585 16 1 7.0054 7.2349 5.1006 17 6 6.5329 6.5459 1.9755 18 6 7.7451 6.8596 1.0964 19 6 8.0516 8.3570 1.1656 20 6 9.2642 8.6705 0.2869 21 7 4.9415 5.4155 -0.0358 22 6 4.1218 4.9550 -0.9581 23 7 3.6904 3.7093 -0.9461 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8902 29 1 1.6765 1.9564 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.9338 0.9285 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 5.2644 2.6332 1.7696 34 1 8.6185 3.4076 4.3558 35 1 5.6704 7.1097 1.6199 36 1 6.7496 6.8254 3.0065 37 1 8.6075 6.2957 1.4521 38 1 7.5283 6.5800 0.0654 39 1 7.1893 8.9211 0.8102 40 1 8.2684 8.6361 2.1967 41 1 9.0477 8.3913 -0.7441 42 1 9.4822 9.7374 0.3359 43 1 10.1263 8.1064 0.6428 44 1 3.7902 5.6177 -1.7438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:17 Heat of formation + Delta-G solvation = 9.277618 kcal Electronic energy + Delta-G solvation = -21644.641210 eV Core-core repulsion = 18595.551021 eV Total energy + Delta-G solvation = -3049.090188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.60805 -38.94225 -36.86922 -35.77589 -34.61999 -33.81317 -32.19254 -30.61338 -29.45440 -26.75349 -25.79540 -24.49051 -24.14995 -22.15058 -22.09816 -21.64562 -19.88017 -18.33860 -18.05951 -16.58540 -16.39131 -16.24285 -16.03899 -15.87307 -15.43251 -15.39913 -14.96861 -14.48742 -14.35230 -14.21999 -14.04024 -13.83967 -13.55707 -13.07561 -12.99463 -12.66399 -12.32186 -12.19219 -12.08049 -12.03056 -11.98660 -11.78531 -11.68608 -11.51215 -11.44478 -11.29561 -11.25843 -10.84473 -10.42825 -9.82001 -9.32444 -8.94188 -6.10935 0.42863 0.65317 1.29108 1.42712 1.57016 2.18795 2.41370 2.77436 3.23221 3.45601 3.63311 3.87670 3.95165 4.04447 4.10893 4.20384 4.23728 4.30497 4.37308 4.47401 4.52281 4.56825 4.74519 4.77044 4.81928 4.85719 4.88725 4.92599 4.93868 5.01933 5.07565 5.13695 5.15402 5.24779 5.32088 5.33364 5.43328 5.44646 5.51463 5.54187 5.75731 5.95518 6.19793 6.58170 7.03364 7.31345 7.73032 8.29215 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016935 B = 0.004916 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.978345 B = 5693.820776 C = 6769.824027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.099 4.099 4 C -0.062 4.062 5 C 0.192 3.808 6 C -0.314 4.314 7 C 0.380 3.620 8 N -0.442 5.442 9 C -0.401 4.401 10 H 0.060 0.940 11 C -0.006 4.006 12 N -0.881 5.881 13 Si 1.082 2.918 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.257 1.257 17 C 0.121 3.879 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.145 4.145 21 N -0.611 5.611 22 C 0.324 3.676 23 N -0.597 5.597 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 1.167 -8.212 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.100 4.100 5 C 0.052 3.948 6 C -0.345 4.345 7 C 0.136 3.864 8 N -0.136 5.136 9 C -0.529 4.529 10 H 0.078 0.922 11 C -0.212 4.212 12 N -0.513 5.513 13 Si 0.905 3.095 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.182 1.182 17 C -0.001 4.001 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.202 4.202 21 N -0.339 5.339 22 C 0.033 3.967 23 N -0.321 5.321 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.001 2.706 -7.275 11.147 hybrid contribution 1.034 -1.917 -0.385 2.212 sum -6.967 0.790 -7.659 10.384 Atomic orbital electron populations 1.21758 0.95161 1.02127 1.01752 1.21527 0.96491 0.95332 1.02489 1.21401 0.92635 0.97855 1.01814 1.20569 0.97241 0.88810 1.03374 1.21556 0.88901 0.96698 0.87642 1.21849 1.09266 0.97639 1.05697 1.19039 0.87189 0.90284 0.89862 1.42664 1.37405 1.06438 1.27119 1.20155 1.41018 0.97302 0.94424 0.92208 1.27346 0.96203 1.04425 0.93215 1.70925 1.14670 1.23493 1.42218 0.83502 0.76133 0.74332 0.75519 1.19884 1.21005 1.18227 1.21691 0.98695 0.81346 0.98378 1.21767 0.96747 0.97551 0.99313 1.21478 0.99651 0.93800 1.00768 1.21709 0.97000 1.02062 0.99419 1.67924 1.20439 1.38997 1.06587 1.25035 0.87524 0.90530 0.93603 1.68169 1.30976 1.05043 1.27903 0.91618 0.93228 0.92581 0.91069 0.91868 0.93669 0.91425 0.89064 0.90429 0.86585 0.92105 0.90188 0.93133 0.94223 0.92558 0.90561 0.92007 0.92698 0.90755 0.93541 0.76804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.94 16 2 C -0.12 -2.42 5.93 30.59 0.18 -2.23 16 3 C -0.10 -2.55 5.09 30.59 0.16 -2.40 16 4 C -0.06 -1.83 5.64 29.85 0.17 -1.66 16 5 C 0.19 7.33 6.19 42.44 0.26 7.60 16 6 C -0.31 -14.12 8.94 22.60 0.20 -13.92 16 7 C 0.38 17.88 7.32 133.16 0.97 18.86 16 8 N -0.44 -21.60 2.36 -517.22 -1.22 -22.82 16 9 C -0.40 -21.54 8.80 84.04 0.74 -20.80 16 10 H 0.06 3.50 7.14 -2.91 -0.02 3.48 16 11 C -0.01 -0.31 5.26 84.88 0.45 0.14 16 12 N -0.88 -49.45 13.70 21.65 0.30 -49.15 16 13 Si 1.08 47.89 25.41 68.60 1.74 49.63 16 14 H -0.27 -11.80 6.51 99.48 0.65 -11.15 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 C 0.12 5.19 3.89 86.38 0.34 5.52 16 18 C -0.11 -4.37 5.54 30.59 0.17 -4.20 16 19 C -0.12 -3.47 5.93 30.59 0.18 -3.29 16 20 C -0.14 -3.57 9.91 71.98 0.71 -2.85 16 21 N -0.61 -25.75 9.38 -197.54 -1.85 -27.60 16 22 C 0.32 11.74 12.28 180.90 2.22 13.96 16 23 N -0.60 -22.16 10.06 -188.31 -1.89 -24.05 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.82 7.99 -2.38 -0.02 1.80 16 31 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.08 2.22 7.93 -2.39 -0.02 2.21 16 33 H 0.12 5.49 6.65 -2.91 -0.02 5.47 16 34 H 0.27 15.15 8.73 -92.72 -0.81 14.34 16 35 H 0.08 3.26 7.55 -2.39 -0.02 3.24 16 36 H 0.05 2.18 3.18 -2.39 -0.01 2.17 16 37 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.22 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -60.19 353.50 5.39 -54.80 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.85 Total: 26.42 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 7.47 Total: -7.22 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -4.67 Total: -123.63 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.74 Total: 49.63 kcal Total: -60.19 5.39 -54.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.080 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds