Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47214 * 2 1 4 4 C 1.36017 * 117.00157 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.08232 * 89.99386 * 4 3 2 6 6 C 1.50702 * 119.98614 * 359.72925 * 5 4 3 7 7 C 1.38277 * 120.01938 * 179.70572 * 5 4 3 8 8 C 1.38262 * 120.18065 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.91787 * 179.97438 * 8 7 5 10 10 C 1.38216 * 120.15862 * 0.02592 * 8 7 5 11 11 C 1.38726 * 119.98302 * 359.92865 * 10 8 7 12 12 N 1.39968 * 120.09203 * 180.02562 * 11 10 8 13 13 C 1.46502 * 119.99877 * 0.02562 * 12 11 10 14 14 C 1.52994 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47432 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47446 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99872 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99736 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46868 * 60.00332 * 20 18 16 22 22 H 1.48497 * 109.46971 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47240 * 300.00952 * 20 18 16 24 24 H 1.09005 * 109.47311 * 300.00560 * 1 2 3 25 25 H 1.09005 * 109.47426 * 60.00131 * 1 2 3 26 26 H 1.09000 * 109.47705 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47197 * 239.99168 * 2 1 3 28 28 H 1.09005 * 109.46684 * 119.99843 * 2 1 3 29 29 H 1.08996 * 109.46957 * 90.00447 * 6 5 4 30 30 H 1.09011 * 109.46702 * 209.99958 * 6 5 4 31 31 H 1.08999 * 109.47405 * 329.99319 * 6 5 4 32 32 H 1.07999 * 119.91048 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.46988 * 90.00407 * 9 8 7 34 34 H 1.09007 * 109.46837 * 210.00165 * 9 8 7 35 35 H 1.08999 * 109.47486 * 329.99681 * 9 8 7 36 36 H 1.08004 * 120.01343 * 179.97438 * 10 8 7 37 37 H 0.96997 * 120.00185 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47254 * 300.00407 * 13 12 11 39 39 H 1.09000 * 109.46582 * 60.00240 * 13 12 11 40 40 H 1.09006 * 109.46996 * 300.00293 * 14 13 12 41 41 H 1.08996 * 109.47716 * 59.99714 * 14 13 12 42 42 H 1.09006 * 109.46795 * 299.99835 * 15 14 13 43 43 H 1.09005 * 109.47228 * 59.99200 * 15 14 13 44 44 H 0.96998 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.0425 1.6165 -1.1993 6 6 3.2973 1.5119 -2.5050 7 6 5.4125 1.8038 -1.1983 8 6 6.1000 1.9002 -0.0027 9 6 7.5932 2.1037 -0.0085 10 6 5.4213 1.8093 1.1979 11 6 4.0467 1.6224 1.2048 12 7 3.3570 1.5306 2.4192 13 6 4.0866 1.6325 3.6855 14 6 3.1052 1.5002 4.8517 15 6 3.8670 1.6072 6.1742 16 6 2.9002 1.4775 7.3229 17 1 1.8477 1.3327 7.1291 18 6 3.3596 1.5426 8.6213 19 7 4.6414 1.7184 8.8572 20 14 2.1611 1.3825 10.0452 21 1 1.4784 0.0658 9.9718 22 1 2.9007 1.4863 11.3287 23 1 1.1514 2.4686 9.9668 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.9789 2.5049 -2.8222 30 1 3.9514 1.0807 -3.2631 31 1 2.4230 0.8743 -2.3744 32 1 5.9470 1.8749 -2.1341 33 1 7.8144 3.1710 -0.0122 34 1 8.0258 1.6461 0.8812 35 1 8.0195 1.6412 -0.8987 36 1 5.9607 1.8846 2.1305 37 1 2.3959 1.3995 2.4225 38 1 4.8280 0.8356 3.7428 39 1 4.5874 2.5992 3.7394 40 1 2.3635 2.2969 4.7945 41 1 2.6047 0.5334 4.7975 42 1 4.6090 0.8107 6.2315 43 1 4.3673 2.5742 6.2281 44 1 4.9645 1.7645 9.7706 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168437082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -46.332518 kcal Electronic energy + Delta-G solvation = -21198.973703 eV Core-core repulsion = 18115.179327 eV Total energy + Delta-G solvation = -3083.794376 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21567 -37.56796 -36.31377 -33.72615 -33.06849 -31.92690 -31.17438 -29.38349 -27.09736 -26.62403 -25.73624 -23.22739 -22.89197 -21.23907 -20.70201 -20.03998 -17.72331 -17.00432 -16.31075 -15.75562 -15.26763 -14.89779 -14.68677 -14.48867 -14.32995 -13.81686 -13.68092 -13.42245 -13.14459 -12.68556 -12.61816 -12.41662 -12.38414 -12.22185 -11.87442 -11.81859 -11.74002 -11.40277 -11.23758 -10.99021 -10.87191 -10.66004 -10.61020 -9.97168 -9.81207 -9.54975 -9.46228 -9.15718 -8.38894 -8.33465 -7.14040 -6.03947 -4.06783 1.32112 1.69136 3.31129 3.35605 3.37853 3.47002 3.72643 4.04215 4.43180 4.81282 4.87588 4.91594 5.09028 5.21156 5.25821 5.31969 5.36287 5.39303 5.48827 5.55230 5.56622 5.61177 5.67294 5.72627 5.75095 5.78561 5.85659 5.94624 5.96832 6.10995 6.13251 6.33822 6.52198 6.57967 6.65158 6.75279 6.90816 6.96610 7.38353 7.60197 7.73171 7.74339 7.94635 8.01187 8.36726 8.99427 9.57478 11.07386 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.003564 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.122833 B = 7853.362118 C = 9223.377806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.325 6.325 4 C 0.000 4.000 5 C -0.054 4.054 6 C -0.107 4.107 7 C -0.180 4.180 8 C -0.038 4.038 9 C -0.114 4.114 10 C -0.198 4.198 11 C 0.219 3.781 12 N -0.736 5.736 13 C 0.121 3.879 14 C -0.120 4.120 15 C 0.026 3.974 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.401 0.599 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -2.080 -22.236 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.242 6.242 4 C -0.048 4.048 5 C -0.055 4.055 6 C -0.164 4.164 7 C -0.200 4.200 8 C -0.039 4.039 9 C -0.171 4.171 10 C -0.221 4.221 11 C 0.112 3.888 12 N -0.363 5.363 13 C -0.003 4.003 14 C -0.158 4.158 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.235 0.765 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.354 -1.915 -21.874 21.960 hybrid contribution -0.821 -0.321 0.983 1.320 sum -1.175 -2.235 -20.891 21.043 Atomic orbital electron populations 1.21748 0.93463 1.02302 1.03224 1.22720 0.95246 0.83714 1.00453 1.86139 1.17876 1.25995 1.94222 1.17857 0.83312 1.13004 0.90660 1.19840 0.93633 0.97903 0.94143 1.20671 0.99725 1.02359 0.93654 1.20453 0.92845 1.09393 0.97301 1.19644 0.95684 0.96078 0.92468 1.20793 0.91502 1.02143 1.02622 1.20478 0.91996 1.11178 0.98411 1.18212 0.91555 0.93135 0.85873 1.45020 1.09872 1.78813 1.02588 1.21627 0.95800 1.00580 0.82249 1.21846 0.97989 1.00822 0.95133 1.19018 0.95446 0.97448 0.89296 1.21174 0.94064 1.49930 0.90965 0.92722 1.25019 0.95146 0.95220 0.99009 1.69947 1.13128 1.49854 1.20456 0.86639 0.81067 0.78675 0.81512 1.20230 1.21238 1.20211 0.91605 0.91898 0.90992 0.93316 0.93198 0.91097 0.91852 0.91696 0.86455 0.91112 0.91452 0.91696 0.85539 0.76453 0.92574 0.92472 0.92748 0.92879 0.96381 0.96337 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.15 0.38 -1.00 16 2 C 0.05 0.60 6.41 37.15 0.24 0.84 16 3 O -0.33 -4.49 8.52 -19.80 -0.17 -4.66 16 4 C 0.00 0.00 5.71 -39.08 -0.22 -0.23 16 5 C -0.05 -0.69 5.89 -104.51 -0.62 -1.31 16 6 C -0.11 -1.07 9.79 36.01 0.35 -0.72 16 7 C -0.18 -2.17 9.35 -39.56 -0.37 -2.54 16 8 C -0.04 -0.48 5.88 -104.62 -0.62 -1.09 16 9 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 10 C -0.20 -2.87 8.96 -39.41 -0.35 -3.23 16 11 C 0.22 3.38 6.67 -83.56 -0.56 2.82 16 12 N -0.74 -11.67 5.73 -58.50 -0.34 -12.01 16 13 C 0.12 2.09 4.92 -4.04 -0.02 2.07 16 14 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 15 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 16 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.50 7.24 -51.93 -0.38 0.12 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 31 H 0.06 0.64 6.30 -51.93 -0.33 0.31 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 35 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.13 1.82 6.74 -52.48 -0.35 1.47 16 37 H 0.40 6.17 7.84 -40.82 -0.32 5.85 16 38 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 39 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 360.87 15.07 5.44 5.44 Total: -1.00 -30.29 360.87 -9.12 -39.40 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.65 Total: 1.93 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.11 Total: -20.66 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.40 Total: -38.01 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.17 Total: -4.66 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.29 -9.12 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168437082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.929 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds