Wall clock time and date at job start Mon Mar 30 2020 02:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47214 * 2 1 4 4 C 1.36017 * 117.00157 * 180.02562 * 3 2 1 5 5 C 1.38505 * 120.08232 * 89.99386 * 4 3 2 6 6 C 1.50702 * 119.98614 * 359.72925 * 5 4 3 7 7 C 1.38277 * 120.01938 * 179.70572 * 5 4 3 8 8 C 1.38262 * 120.18065 * 0.02562 * 7 5 4 9 9 C 1.50700 * 119.91787 * 179.97438 * 8 7 5 10 10 C 1.38216 * 120.15862 * 0.02592 * 8 7 5 11 11 C 1.38726 * 119.98302 * 359.92865 * 10 8 7 12 12 N 1.39968 * 120.09203 * 180.02562 * 11 10 8 13 13 C 1.46502 * 119.99877 * 0.02562 * 12 11 10 14 14 C 1.52994 * 109.47007 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47432 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47446 * 179.97438 * 15 14 13 17 17 H 1.07993 * 119.99872 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99736 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00054 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46868 * 60.00332 * 20 18 16 22 22 H 1.48497 * 109.46971 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47240 * 300.00952 * 20 18 16 24 24 H 1.09005 * 109.47311 * 300.00560 * 1 2 3 25 25 H 1.09005 * 109.47426 * 60.00131 * 1 2 3 26 26 H 1.09000 * 109.47705 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47197 * 239.99168 * 2 1 3 28 28 H 1.09005 * 109.46684 * 119.99843 * 2 1 3 29 29 H 1.08996 * 109.46957 * 90.00447 * 6 5 4 30 30 H 1.09011 * 109.46702 * 209.99958 * 6 5 4 31 31 H 1.08999 * 109.47405 * 329.99319 * 6 5 4 32 32 H 1.07999 * 119.91048 * 180.02562 * 7 5 4 33 33 H 1.09000 * 109.46988 * 90.00407 * 9 8 7 34 34 H 1.09007 * 109.46837 * 210.00165 * 9 8 7 35 35 H 1.08999 * 109.47486 * 329.99681 * 9 8 7 36 36 H 1.08004 * 120.01343 * 179.97438 * 10 8 7 37 37 H 0.96997 * 120.00185 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47254 * 300.00407 * 13 12 11 39 39 H 1.09000 * 109.46582 * 60.00240 * 13 12 11 40 40 H 1.09006 * 109.46996 * 300.00293 * 14 13 12 41 41 H 1.08996 * 109.47716 * 59.99714 * 14 13 12 42 42 H 1.09006 * 109.46795 * 299.99835 * 15 14 13 43 43 H 1.09005 * 109.47228 * 59.99200 * 15 14 13 44 44 H 0.96998 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3547 1.5255 -0.0005 5 6 4.0425 1.6165 -1.1993 6 6 3.2973 1.5119 -2.5050 7 6 5.4125 1.8038 -1.1983 8 6 6.1000 1.9002 -0.0027 9 6 7.5932 2.1037 -0.0085 10 6 5.4213 1.8093 1.1979 11 6 4.0467 1.6224 1.2048 12 7 3.3570 1.5306 2.4192 13 6 4.0866 1.6325 3.6855 14 6 3.1052 1.5002 4.8517 15 6 3.8670 1.6072 6.1742 16 6 2.9002 1.4775 7.3229 17 1 1.8477 1.3327 7.1291 18 6 3.3596 1.5426 8.6213 19 7 4.6414 1.7184 8.8572 20 14 2.1611 1.3825 10.0452 21 1 1.4784 0.0658 9.9718 22 1 2.9007 1.4863 11.3287 23 1 1.1514 2.4686 9.9668 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.9789 2.5049 -2.8222 30 1 3.9514 1.0807 -3.2631 31 1 2.4230 0.8743 -2.3744 32 1 5.9470 1.8749 -2.1341 33 1 7.8144 3.1710 -0.0122 34 1 8.0258 1.6461 0.8812 35 1 8.0195 1.6412 -0.8987 36 1 5.9607 1.8846 2.1305 37 1 2.3959 1.3995 2.4225 38 1 4.8280 0.8356 3.7428 39 1 4.5874 2.5992 3.7394 40 1 2.3635 2.2969 4.7945 41 1 2.6047 0.5334 4.7975 42 1 4.6090 0.8107 6.2315 43 1 4.3673 2.5742 6.2281 44 1 4.9645 1.7645 9.7706 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168437082.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:56 Heat of formation + Delta-G solvation = -62.190766 kcal Electronic energy + Delta-G solvation = -21199.661368 eV Core-core repulsion = 18115.179327 eV Total energy + Delta-G solvation = -3084.482041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24287 -38.57552 -37.64963 -35.57632 -33.96807 -33.58770 -32.16415 -30.67927 -28.29796 -27.84539 -26.94407 -24.88293 -23.80462 -22.52481 -22.08792 -21.26186 -18.79424 -18.51881 -17.96595 -16.93724 -16.47751 -16.43577 -16.07958 -15.87581 -15.36209 -14.95412 -14.57653 -14.45526 -14.23180 -13.99649 -13.88742 -13.68839 -13.44541 -13.36391 -13.11609 -12.88776 -12.69191 -12.65569 -12.56680 -12.45005 -12.36894 -12.17820 -11.86163 -11.68638 -11.50917 -11.24273 -10.77490 -10.70391 -10.57467 -9.33572 -8.29322 -8.22501 -6.33853 0.31039 0.64559 1.39179 1.42039 1.50055 2.35340 2.43253 2.59022 3.03840 3.10953 3.87181 3.97663 4.08413 4.11081 4.16997 4.25889 4.32877 4.41936 4.48006 4.51291 4.54889 4.61941 4.73240 4.82187 4.87453 4.89183 4.90829 4.91946 4.98498 5.05518 5.09903 5.12503 5.23415 5.27481 5.37413 5.45924 5.57613 5.66814 5.76170 5.80118 5.93468 6.16089 6.25517 6.63683 6.81369 6.85923 7.35453 8.89242 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.003564 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.122833 B = 7853.362118 C = 9223.377806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.337 6.337 4 C -0.013 4.013 5 C -0.061 4.061 6 C -0.105 4.105 7 C -0.175 4.175 8 C -0.043 4.043 9 C -0.112 4.112 10 C -0.217 4.217 11 C 0.195 3.805 12 N -0.739 5.739 13 C 0.139 3.861 14 C -0.103 4.103 15 C 0.029 3.971 16 C -0.547 4.547 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.267 1.267 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.146 0.854 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.401 0.599 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.057 0.943 42 H -0.004 1.004 43 H -0.005 1.005 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 -2.428 -23.929 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.255 6.255 4 C -0.060 4.060 5 C -0.062 4.062 6 C -0.161 4.161 7 C -0.195 4.195 8 C -0.043 4.043 9 C -0.169 4.169 10 C -0.239 4.239 11 C 0.090 3.910 12 N -0.368 5.368 13 C 0.015 3.985 14 C -0.141 4.141 15 C -0.009 4.009 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.789 3.211 21 H -0.191 1.191 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.236 0.764 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.057 -2.265 -23.604 23.736 hybrid contribution -0.555 -0.212 1.411 1.531 sum -1.612 -2.477 -22.193 22.389 Atomic orbital electron populations 1.21757 0.91864 1.03554 1.03089 1.22861 0.96487 0.82649 1.00374 1.86110 1.17639 1.27433 1.94268 1.18086 0.83714 1.13306 0.90940 1.20231 0.94232 0.97003 0.94721 1.20718 0.99877 1.02899 0.92633 1.20831 0.92756 1.07746 0.98184 1.20005 0.97242 0.95094 0.91990 1.20845 0.89500 1.02943 1.03597 1.20616 0.91950 1.12262 0.99120 1.18450 0.92087 0.94612 0.85880 1.44765 1.09729 1.80046 1.02232 1.21237 0.94876 1.00160 0.82250 1.21562 0.97846 1.01065 0.93626 1.18898 0.95020 0.95244 0.91711 1.21635 0.94765 1.49919 0.92143 0.92172 1.25973 0.97007 0.94661 1.02093 1.70079 1.15153 1.50691 1.21245 0.85499 0.78688 0.79185 0.77679 1.19127 1.20753 1.19228 0.92494 0.91229 0.89043 0.92230 0.94402 0.90496 0.89635 0.91739 0.83588 0.90196 0.91648 0.89592 0.86372 0.76385 0.92892 0.93081 0.92595 0.92413 0.98535 0.98641 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.28 71.98 0.74 -1.74 16 2 C 0.05 1.11 6.41 71.98 0.46 1.57 16 3 O -0.34 -9.15 8.52 -93.75 -0.80 -9.95 16 4 C -0.01 -0.36 5.71 22.59 0.13 -0.23 16 5 C -0.06 -1.45 5.89 -19.79 -0.12 -1.57 16 6 C -0.10 -1.82 9.79 71.24 0.70 -1.12 16 7 C -0.18 -3.82 9.35 22.28 0.21 -3.61 16 8 C -0.04 -1.02 5.88 -19.86 -0.12 -1.14 16 9 C -0.11 -1.98 10.01 71.24 0.71 -1.26 16 10 C -0.22 -6.36 8.96 22.38 0.20 -6.16 16 11 C 0.19 6.08 6.67 38.22 0.25 6.33 16 12 N -0.74 -24.02 5.73 -338.98 -1.94 -25.96 16 13 C 0.14 4.98 4.92 86.38 0.42 5.41 16 14 C -0.10 -4.25 5.27 30.59 0.16 -4.09 16 15 C 0.03 1.52 4.97 29.85 0.15 1.67 16 16 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 0.04 5.46 84.66 0.46 0.50 16 19 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 20 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.15 7.24 -2.39 -0.02 1.13 16 28 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.10 8.09 -2.38 -0.02 1.08 16 31 H 0.06 1.13 6.30 -2.39 -0.02 1.11 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.18 8.08 -2.38 -0.02 1.16 16 35 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 36 H 0.12 3.55 6.74 -2.91 -0.02 3.53 16 37 H 0.40 12.63 7.84 -92.71 -0.73 11.91 16 38 H 0.05 1.91 7.95 -2.39 -0.02 1.89 16 39 H 0.05 1.87 7.95 -2.39 -0.02 1.85 16 40 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 43 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 44 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -65.53 360.87 4.41 -61.13 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.24 Total: 21.38 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 4.60 Total: -36.44 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.66 Total: -82.42 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.80 Total: -9.95 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.53 4.41 -61.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168437082.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.062 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds