Wall clock time and date at job start Mon Mar 30 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36357 * 119.91889 * 2 1 4 4 C 1.40868 * 119.83685 * 180.30057 * 3 2 1 5 5 C 1.41133 * 120.15403 * 179.73915 * 4 3 2 6 6 H 1.08003 * 120.00694 * 330.11179 * 5 4 3 7 7 C 1.39873 * 119.99691 * 150.10842 * 5 4 3 8 8 N 1.30905 * 120.00044 * 161.72125 * 7 5 4 9 9 Si 1.86796 * 119.99970 * 341.72253 * 7 5 4 10 10 H 1.48502 * 109.47187 * 95.41439 * 9 7 5 11 11 H 1.48498 * 109.47000 * 215.41404 * 9 7 5 12 12 H 1.48497 * 109.47060 * 335.41428 * 9 7 5 13 13 C 1.40897 * 119.68651 * 359.71681 * 4 3 2 14 14 C 1.36320 * 119.83840 * 0.02562 * 13 4 3 15 15 C 1.39548 * 119.92018 * 179.76787 * 2 1 3 16 16 N 1.38858 * 119.83797 * 359.97438 * 15 2 1 17 17 C 1.46500 * 119.99681 * 179.73147 * 16 15 2 18 18 C 1.52998 * 109.47174 * 179.97438 * 17 16 15 19 19 N 1.46904 * 109.47000 * 179.97438 * 18 17 16 20 20 C 1.46899 * 111.00045 * 293.95217 * 19 18 17 21 21 C 1.46907 * 110.99647 * 170.00126 * 19 18 17 22 22 C 1.53007 * 109.46708 * 189.99884 * 21 19 18 23 23 N 1.46897 * 109.46789 * 180.02562 * 22 21 19 24 24 H 1.09007 * 109.46552 * 270.23587 * 1 2 3 25 25 H 1.08997 * 109.47063 * 30.23577 * 1 2 3 26 26 H 1.09002 * 109.46913 * 150.23967 * 1 2 3 27 27 H 1.08006 * 120.07905 * 0.02562 * 3 2 1 28 28 H 0.96994 * 120.00484 * 180.02562 * 8 7 5 29 29 H 1.08003 * 120.07944 * 179.97438 * 13 4 3 30 30 H 1.08004 * 119.92352 * 180.02562 * 14 13 4 31 31 H 0.96995 * 120.00341 * 359.72209 * 16 15 2 32 32 H 1.09003 * 109.47579 * 59.99577 * 17 16 15 33 33 H 1.09001 * 109.47003 * 299.99828 * 17 16 15 34 34 H 1.08998 * 109.47190 * 299.99328 * 18 17 16 35 35 H 1.08998 * 109.47355 * 59.99799 * 18 17 16 36 36 H 1.08998 * 109.47072 * 60.00243 * 20 19 18 37 37 H 1.08995 * 109.47217 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47122 * 300.00293 * 20 19 18 39 39 H 1.08994 * 109.46953 * 309.99634 * 21 19 18 40 40 H 1.08993 * 109.47185 * 70.00014 * 21 19 18 41 41 H 1.08999 * 109.47042 * 300.00035 * 22 21 19 42 42 H 1.08996 * 109.47060 * 59.99625 * 22 21 19 43 43 H 1.00898 * 111.00351 * 56.04619 * 23 22 21 44 44 H 1.00904 * 111.00077 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1872 1.1819 0.0000 4 6 3.5959 1.1798 -0.0064 5 6 4.3065 2.3992 -0.0120 6 1 3.8758 3.2732 -0.4778 7 6 5.5687 2.4757 0.5858 8 7 6.3762 3.4615 0.2862 9 14 6.1022 1.1710 1.8116 10 1 6.8977 0.1302 1.1121 11 1 6.9311 1.7979 2.8723 12 1 4.9020 0.5478 2.4249 13 6 4.2919 -0.0452 -0.0067 14 6 3.5989 -1.2191 -0.0014 15 6 2.2031 -1.2095 0.0049 16 7 1.5038 -2.4091 0.0103 17 6 2.2310 -3.6809 0.0095 18 6 1.2319 -4.8396 0.0168 19 7 1.9611 -6.1149 0.0154 20 6 2.6993 -6.2978 -1.2414 21 6 1.0512 -7.2418 0.2603 22 6 1.8675 -8.5137 0.4994 23 7 0.9576 -9.6408 0.7437 24 1 -0.3633 0.0042 1.0278 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5101 27 1 1.6471 2.1172 0.0004 28 1 7.2516 3.5144 0.7005 29 1 5.3719 -0.0541 -0.0120 30 1 4.1311 -2.1589 -0.0012 31 1 0.5338 -2.4050 0.0147 32 1 2.8614 -3.7396 0.8968 33 1 2.8534 -3.7429 -0.8832 34 1 0.6099 -4.7774 0.9097 35 1 0.6012 -4.7812 -0.8702 36 1 3.4157 -5.4855 -1.3636 37 1 3.2297 -7.2497 -1.2160 38 1 1.9999 -6.2942 -2.0774 39 1 0.4406 -7.0316 1.1383 40 1 0.4053 -7.3822 -0.6063 41 1 2.4781 -8.7239 -0.3787 42 1 2.5135 -8.3733 1.3660 43 1 0.3055 -9.7508 -0.0184 44 1 1.4729 -10.4933 0.9041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170502689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:31 Heat of formation + Delta-G solvation = 3.137607 kcal Electronic energy + Delta-G solvation = -21051.928124 eV Core-core repulsion = 18002.571685 eV Total energy + Delta-G solvation = -3049.356439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32229 -39.13899 -36.86214 -35.48166 -34.69061 -33.44828 -31.60867 -29.71881 -28.67504 -27.83668 -26.56848 -25.27183 -23.32437 -22.11862 -21.76071 -21.54461 -18.94152 -18.22147 -17.37944 -17.02813 -16.83748 -16.47400 -16.28534 -15.49117 -15.34300 -15.07567 -15.03808 -14.56407 -14.47053 -14.25858 -14.03499 -13.93829 -13.80127 -13.37046 -12.98455 -12.96402 -12.75076 -12.56906 -12.47323 -12.20849 -12.16086 -12.02550 -11.89543 -11.71367 -11.36037 -10.97478 -10.42233 -9.65343 -9.38487 -9.37586 -8.76726 -8.24711 -6.17061 0.87088 0.96377 1.28435 1.43025 1.51792 2.18545 2.45664 2.69754 3.19572 3.58521 3.75811 3.97225 4.04065 4.08305 4.15448 4.23692 4.27091 4.44099 4.51019 4.55669 4.58785 4.62099 4.68324 4.85387 4.91640 4.93465 4.98410 4.99491 5.02391 5.06373 5.11431 5.19575 5.38666 5.50084 5.68554 5.85359 5.96369 6.00558 6.02691 6.19944 6.27012 6.44597 6.56309 6.65975 6.90746 6.99048 7.21271 8.33826 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.024329 B = 0.003438 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.633655 B = 8142.454595 C = 8947.788171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.127 4.127 3 C -0.173 4.173 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.049 0.951 7 C 0.042 3.958 8 N -0.870 5.870 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.256 1.256 13 C -0.207 4.207 14 C -0.158 4.158 15 C 0.125 3.875 16 N -0.747 5.747 17 C 0.139 3.861 18 C 0.059 3.941 19 N -0.549 5.549 20 C 0.016 3.984 21 C 0.062 3.938 22 C 0.068 3.932 23 N -0.858 5.858 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.287 0.713 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.400 0.600 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.346 0.654 44 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.929 -24.054 -0.606 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C -0.193 4.193 4 C 0.025 3.975 5 C -0.520 4.520 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.499 5.499 9 Si 0.788 3.212 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.180 1.180 13 C -0.227 4.227 14 C -0.180 4.180 15 C 0.024 3.976 16 N -0.383 5.383 17 C 0.014 3.986 18 C -0.069 4.069 19 N -0.274 5.274 20 C -0.132 4.132 21 C -0.067 4.067 22 C -0.063 4.063 23 N -0.390 5.390 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.236 0.764 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.159 0.841 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.473 -23.601 0.417 25.824 hybrid contribution 0.406 -0.033 -1.228 1.294 sum -10.067 -23.634 -0.811 25.701 Atomic orbital electron populations 1.20576 0.89737 1.02571 1.02183 1.19244 0.96644 0.91202 1.06013 1.20711 0.93228 0.96755 1.08565 1.17742 0.92985 0.92416 0.94354 1.19248 1.01094 0.96732 1.34890 0.93259 1.26692 0.94976 0.97734 0.97457 1.69779 1.08459 1.32930 1.38725 0.85515 0.78911 0.78314 0.78432 1.18907 1.20842 1.18014 1.20665 0.97895 0.93087 1.11078 1.20170 0.92886 0.97087 1.07869 1.17246 0.90418 0.86033 1.03857 1.43886 1.07530 1.01416 1.85512 1.21041 0.94735 0.82492 1.00344 1.22076 0.94884 0.88023 1.01922 1.61749 1.28398 1.01757 1.35454 1.22556 0.98336 1.03135 0.89133 1.22031 0.93823 0.89959 1.00850 1.21673 0.94231 0.90133 1.00242 1.58591 1.22103 1.08233 1.50058 0.91116 0.91691 0.90841 0.88047 0.90275 0.89091 0.86704 0.76368 0.93527 0.93513 0.89688 0.93624 0.91522 0.90164 0.95121 0.90454 0.94408 0.94815 0.91205 0.84094 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.66 9.55 71.24 0.68 -1.98 16 2 C -0.13 -4.99 5.86 -19.99 -0.12 -5.11 16 3 C -0.17 -8.17 9.37 22.47 0.21 -7.96 16 4 C 0.03 1.51 5.10 -21.27 -0.11 1.40 16 5 C -0.49 -29.04 9.55 23.38 0.22 -28.82 16 6 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 7 C 0.04 2.43 5.40 85.23 0.46 2.89 16 8 N -0.87 -51.02 13.93 21.82 0.30 -50.72 16 9 Si 0.96 46.11 24.51 68.60 1.68 47.79 16 10 H -0.26 -11.98 6.70 99.48 0.67 -11.31 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.26 -12.51 6.87 99.48 0.68 -11.83 16 13 C -0.21 -10.34 7.11 22.47 0.16 -10.18 16 14 C -0.16 -6.74 9.23 22.15 0.20 -6.54 16 15 C 0.12 4.76 6.65 38.67 0.26 5.02 16 16 N -0.75 -21.34 5.60 -338.99 -1.90 -23.24 16 17 C 0.14 3.46 4.81 86.38 0.42 3.88 16 18 C 0.06 1.11 5.07 86.30 0.44 1.55 16 19 N -0.55 -9.75 4.76 -922.46 -4.39 -14.14 16 20 C 0.02 0.26 9.13 127.69 1.17 1.43 16 21 C 0.06 0.91 5.22 86.30 0.45 1.36 16 22 C 0.07 0.91 6.72 86.31 0.58 1.48 16 23 N -0.86 -9.47 9.62 -186.72 -1.80 -11.27 16 24 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.06 1.77 8.08 -2.39 -0.02 1.75 16 26 H 0.07 1.70 6.54 -2.39 -0.02 1.68 16 27 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.29 15.24 8.30 -92.71 -0.77 14.47 16 29 H 0.09 4.61 4.73 -2.91 -0.01 4.59 16 30 H 0.12 4.36 6.68 -2.91 -0.02 4.34 16 31 H 0.40 9.47 6.43 -92.71 -0.60 8.87 16 32 H 0.05 1.30 7.93 -2.39 -0.02 1.29 16 33 H 0.05 1.22 6.34 -2.39 -0.02 1.20 16 34 H 0.08 1.51 7.93 -2.39 -0.02 1.49 16 35 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 36 H 0.07 1.21 6.47 -2.39 -0.02 1.19 16 37 H 0.08 1.09 6.30 -2.39 -0.02 1.08 16 38 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 1.25 7.93 -2.39 -0.02 1.23 16 40 H 0.04 0.51 8.12 -2.39 -0.02 0.49 16 41 H 0.03 0.41 6.47 -2.39 -0.02 0.39 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.35 2.90 8.99 -89.70 -0.81 2.10 16 44 H 0.35 2.84 9.08 -89.69 -0.81 2.03 16 Total: -1.00 -65.87 342.86 -2.34 -68.21 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -1.26 Total: 24.95 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 5.02 Total: -41.58 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -7.79 Total: -99.37 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.68 Total: 47.79 kcal Total: -65.87 -2.34 -68.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170502689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.349 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds