Wall clock time and date at job start Mon Mar 30 2020 02:23:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.36355 * 120.07759 * 2 1
4 4 C 1.39549 * 120.15875 * 180.25301 * 3 2 1
5 5 N 1.38856 * 119.84284 * 179.75888 * 4 3 2
6 6 C 1.46500 * 120.00068 * 179.72580 * 5 4 3
7 7 C 1.52996 * 109.47365 * 180.02562 * 6 5 4
8 8 N 1.46898 * 109.47454 * 180.02562 * 7 6 5
9 9 C 1.46900 * 111.00209 * 66.04174 * 8 7 6
10 10 C 1.46903 * 111.00199 * 190.00068 * 8 7 6
11 11 C 1.52995 * 109.47079 * 169.99875 * 10 8 7
12 12 N 1.46903 * 109.47079 * 180.02562 * 11 10 8
13 13 C 1.39592 * 120.31377 * 359.48298 * 4 3 2
14 14 C 1.36318 * 120.15852 * 0.23177 * 13 4 3
15 15 C 1.40869 * 120.08290 * 179.71608 * 2 1 3
16 16 C 1.41145 * 120.15341 * 0.02562 * 15 2 1
17 17 H 1.08004 * 119.99693 * 333.64465 * 16 15 2
18 18 C 1.39858 * 119.99789 * 153.64957 * 16 15 2
19 19 N 1.30909 * 119.99920 * 343.79160 * 18 16 15
20 20 Si 1.86801 * 120.00068 * 163.79606 * 18 16 15
21 21 H 1.48494 * 109.46949 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47269 * 119.99731 * 20 18 16
23 23 H 1.48505 * 109.46753 * 239.99601 * 20 18 16
24 24 H 1.08997 * 109.47755 * 270.28005 * 1 2 3
25 25 H 1.09000 * 109.47549 * 30.28638 * 1 2 3
26 26 H 1.09007 * 109.47219 * 150.28184 * 1 2 3
27 27 H 1.07999 * 119.92452 * 0.02562 * 3 2 1
28 28 H 0.97000 * 120.00089 * 359.72687 * 5 4 3
29 29 H 1.09000 * 109.47307 * 59.99959 * 6 5 4
30 30 H 1.08998 * 109.47089 * 299.99991 * 6 5 4
31 31 H 1.09007 * 109.46821 * 300.00165 * 7 6 5
32 32 H 1.09000 * 109.47075 * 59.99653 * 7 6 5
33 33 H 1.09000 * 109.46727 * 60.00137 * 9 8 7
34 34 H 1.08995 * 109.47074 * 180.02562 * 9 8 7
35 35 H 1.09001 * 109.46634 * 300.00387 * 9 8 7
36 36 H 1.09000 * 109.46555 * 289.99576 * 10 8 7
37 37 H 1.08998 * 109.46762 * 49.99238 * 10 8 7
38 38 H 1.09000 * 109.47183 * 299.99317 * 11 10 8
39 39 H 1.08996 * 109.47549 * 59.99587 * 11 10 8
40 40 H 1.00896 * 111.00392 * 179.97438 * 12 11 10
41 41 H 1.00907 * 110.99565 * 303.95045 * 12 11 10
42 42 H 1.07998 * 119.91822 * 180.25446 * 13 4 3
43 43 H 1.08002 * 120.08119 * 180.02562 * 14 13 4
44 44 H 0.96999 * 119.99939 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1904 1.1799 0.0000
4 6 3.5859 1.1819 -0.0053
5 7 4.2751 2.3873 -0.0104
6 6 5.7401 2.3935 -0.0099
7 6 6.2441 3.8380 -0.0154
8 7 7.7131 3.8442 -0.0155
9 6 8.2418 3.2848 -1.2667
10 6 8.2339 5.1979 0.2175
11 6 9.7432 5.1291 0.4586
12 7 10.2639 6.4827 0.6922
13 6 4.2922 -0.0221 0.0002
14 6 3.6221 -1.2092 0.0061
15 6 2.2131 -1.2189 0.0060
16 6 1.5125 -2.4442 0.0116
17 1 0.5167 -2.4949 0.4267
18 6 2.1077 -3.5925 -0.5204
19 7 3.1560 -3.4864 -1.2973
20 14 1.4069 -5.2777 -0.1225
21 1 0.2302 -5.1261 0.7706
22 1 0.9915 -5.9505 -1.3794
23 1 2.4423 -6.0962 0.5583
24 1 -0.3634 0.0050 1.0276
25 1 -0.3634 0.8874 -0.5183
26 1 -0.3634 -0.8925 -0.5095
27 1 1.6504 2.1153 0.0004
28 1 3.7866 3.2254 -0.0142
29 1 6.1059 1.8773 -0.8975
30 1 6.1053 1.8851 0.8824
31 1 5.8789 4.3469 -0.9076
32 1 5.8783 4.3539 0.8724
33 1 7.8897 3.8810 -2.1086
34 1 9.3313 3.3009 -1.2401
35 1 7.8965 2.2571 -1.3796
36 1 8.0333 5.8195 -0.6552
37 1 7.7456 5.6296 1.0911
38 1 9.9438 4.5076 1.3312
39 1 10.2315 4.6973 -0.4150
40 1 11.2596 6.4642 0.8546
41 1 10.0338 7.0961 -0.0753
42 1 5.3721 -0.0131 0.0002
43 1 4.1698 -2.1400 0.0107
44 1 3.5687 -4.2828 -1.6665
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001170502863.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:23:26
Heat of formation + Delta-G solvation = 22.664220 kcal
Electronic energy + Delta-G solvation = -20850.693030 eV
Core-core repulsion = 17802.183329 eV
Total energy + Delta-G solvation = -3048.509702 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-38.56759 -37.86549 -35.50337 -34.32735 -33.00394 -31.05015 -29.87239 -28.18881
-27.66664 -26.22491 -24.94631 -23.78556 -21.88131 -21.14706 -20.62240 -19.04610
-17.05976 -16.51834 -16.32523 -15.88719 -15.55409 -14.97173 -14.75402 -14.42918
-14.05638 -13.85706 -13.60208 -13.24095 -12.82133 -12.60594 -12.49712 -12.03648
-11.97226 -11.67475 -11.59909 -11.53838 -11.43018 -11.06533 -11.05360 -10.96526
-10.82079 -10.58336 -10.34919 -9.51356 -9.21658 -9.15222 -9.07741 -8.54069
-8.42012 -7.29024 -6.59166 -6.32539 -3.99543 2.92630 3.10473 3.17519
3.22741 3.38309 3.46935 4.08359 4.36101 4.54854 4.77973 4.80243
4.80915 4.95912 5.12312 5.23921 5.34867 5.38084 5.55422 5.63495
5.71309 5.78944 5.83497 6.13737 6.19790 6.29130 6.34046 6.48661
6.68710 6.74615 6.76456 6.82778 6.87736 6.96987 7.02962 7.07073
7.26852 7.40401 7.65607 7.79109 7.86814 8.19463 8.35396 8.52884
8.74031 8.83339 9.10585 9.19936 10.42091
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.030047 B = 0.002976 C = 0.002763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 931.660379 B = 9406.396297 C =10130.802505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 C -0.158 4.158
3 C -0.158 4.158
4 C 0.098 3.902
5 N -0.763 5.763
6 C 0.143 3.857
7 C 0.049 3.951
8 N -0.538 5.538
9 C 0.016 3.984
10 C 0.058 3.942
11 C 0.063 3.937
12 N -0.852 5.852
13 C -0.167 4.167
14 C -0.120 4.120
15 C 0.077 3.923
16 C -0.462 4.462
17 H 0.075 0.925
18 C 0.073 3.927
19 N -0.810 5.810
20 Si 0.901 3.099
21 H -0.263 1.263
22 H -0.278 1.278
23 H -0.275 1.275
24 H 0.041 0.959
25 H 0.035 0.965
26 H 0.062 0.938
27 H 0.085 0.915
28 H 0.382 0.618
29 H 0.047 0.953
30 H 0.056 0.944
31 H 0.036 0.964
32 H 0.078 0.922
33 H 0.025 0.975
34 H 0.068 0.932
35 H 0.077 0.923
36 H 0.030 0.970
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.028 0.972
40 H 0.344 0.656
41 H 0.338 0.662
42 H 0.087 0.913
43 H 0.118 0.882
44 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.030 13.274 0.291 16.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.160 4.160
3 C -0.181 4.181
4 C 0.001 3.999
5 N -0.399 5.399
6 C 0.017 3.983
7 C -0.079 4.079
8 N -0.262 5.262
9 C -0.132 4.132
10 C -0.071 4.071
11 C -0.068 4.068
12 N -0.382 5.382
13 C -0.189 4.189
14 C -0.140 4.140
15 C 0.074 3.926
16 C -0.493 4.493
17 H 0.093 0.907
18 C -0.141 4.141
19 N -0.437 5.437
20 Si 0.726 3.274
21 H -0.187 1.187
22 H -0.204 1.204
23 H -0.200 1.200
24 H 0.060 0.940
25 H 0.054 0.946
26 H 0.081 0.919
27 H 0.104 0.896
28 H 0.214 0.786
29 H 0.065 0.935
30 H 0.074 0.926
31 H 0.054 0.946
32 H 0.096 0.904
33 H 0.043 0.957
34 H 0.086 0.914
35 H 0.096 0.904
36 H 0.048 0.952
37 H 0.101 0.899
38 H 0.100 0.900
39 H 0.046 0.954
40 H 0.157 0.843
41 H 0.150 0.850
42 H 0.106 0.894
43 H 0.135 0.865
44 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 10.040 12.724 1.175 16.250
hybrid contribution -0.012 -0.151 -1.545 1.552
sum 10.027 12.572 -0.370 16.086
Atomic orbital electron populations
1.20412 0.93690 1.00483 0.99585 1.19309 0.94155 0.92752 1.09810
1.19648 0.91484 0.96429 1.10508 1.17304 0.90566 0.84979 1.07014
1.43761 1.03248 1.05324 1.87559 1.20905 0.82099 0.94374 1.00880
1.22247 0.86650 0.97966 1.01059 1.61772 1.07720 1.21372 1.35361
1.22551 1.00392 1.00868 0.89393 1.22050 0.95250 0.88966 1.00809
1.21790 0.94361 0.90001 1.00641 1.58616 1.19680 1.10646 1.49259
1.20089 0.97144 0.91995 1.09691 1.20911 0.94628 0.96042 1.02384
1.17363 0.91628 0.91637 0.92013 1.19383 1.01995 0.92509 1.35434
0.90710 1.25799 0.94451 1.00872 0.93019 1.69863 1.19375 1.30835
1.23660 0.86386 0.79877 0.82133 0.78980 1.18657 1.20351 1.20038
0.94033 0.94551 0.91931 0.89640 0.78563 0.93512 0.92601 0.94577
0.90398 0.95657 0.91376 0.90433 0.95220 0.89913 0.89968 0.95388
0.84329 0.84992 0.89437 0.86452 0.91482
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.80 9.39 36.01 0.34 -1.46 16
2 C -0.16 -3.89 5.90 -104.30 -0.62 -4.51 16
3 C -0.16 -3.61 9.46 -39.77 -0.38 -3.98 16
4 C 0.10 2.18 6.67 -83.69 -0.56 1.62 16
5 N -0.76 -13.53 5.70 -58.50 -0.33 -13.86 16
6 C 0.14 2.21 4.81 -4.04 -0.02 2.19 16
7 C 0.05 0.60 5.07 -3.83 -0.02 0.58 16
8 N -0.54 -6.04 4.76 -242.92 -1.16 -7.20 16
9 C 0.02 0.17 9.13 60.06 0.55 0.71 16
10 C 0.06 0.55 5.22 -3.82 -0.02 0.53 16
11 C 0.06 0.53 6.72 -3.82 -0.03 0.50 16
12 N -0.85 -6.11 9.62 -10.37 -0.10 -6.21 16
13 C -0.17 -4.00 9.23 -39.77 -0.37 -4.37 16
14 C -0.12 -3.18 8.62 -39.27 -0.34 -3.51 16
15 C 0.08 2.07 5.56 -106.79 -0.59 1.47 16
16 C -0.46 -12.45 8.09 -37.87 -0.31 -12.75 16
17 H 0.07 1.95 6.89 -52.48 -0.36 1.59 16
18 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16
19 N -0.81 -21.62 10.97 55.54 0.61 -21.01 16
20 Si 0.90 19.36 29.59 -169.99 -5.03 14.33 16
21 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16
24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
25 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16
26 H 0.06 1.36 6.78 -51.93 -0.35 1.01 16
27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16
28 H 0.38 5.99 8.47 -40.82 -0.35 5.64 16
29 H 0.05 0.76 6.34 -51.93 -0.33 0.43 16
30 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16
31 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16
32 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16
33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16
34 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16
35 H 0.08 0.88 6.47 -51.93 -0.34 0.55 16
36 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16
37 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16
38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.03 0.22 6.47 -51.93 -0.34 -0.11 16
40 H 0.34 1.90 9.08 -39.29 -0.36 1.55 16
41 H 0.34 2.01 8.99 -39.29 -0.35 1.66 16
42 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16
43 H 0.12 3.23 6.23 -52.49 -0.33 2.90 16
44 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16
LS Contribution 348.59 15.07 5.25 5.25
Total: -1.00 -28.75 348.59 -10.30 -39.05
By element:
Atomic # 1 Polarization: 17.92 SS G_CDS: -7.10 Total: 10.82 kcal
Atomic # 6 Polarization: -18.73 SS G_CDS: -2.44 Total: -21.17 kcal
Atomic # 7 Polarization: -47.29 SS G_CDS: -0.98 Total: -48.27 kcal
Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -28.75 -10.30 -39.05 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001170502863.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.713 kcal
(2) G-P(sol) polarization free energy of solvation -28.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.664 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds