Wall clock time and date at job start Mon Mar 30 2020 02:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36355 * 120.07759 * 2 1 4 4 C 1.39549 * 120.15875 * 180.25301 * 3 2 1 5 5 N 1.38856 * 119.84284 * 179.75888 * 4 3 2 6 6 C 1.46500 * 120.00068 * 179.72580 * 5 4 3 7 7 C 1.52996 * 109.47365 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47454 * 180.02562 * 7 6 5 9 9 C 1.46900 * 111.00209 * 66.04174 * 8 7 6 10 10 C 1.46903 * 111.00199 * 190.00068 * 8 7 6 11 11 C 1.52995 * 109.47079 * 169.99875 * 10 8 7 12 12 N 1.46903 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.39592 * 120.31377 * 359.48298 * 4 3 2 14 14 C 1.36318 * 120.15852 * 0.23177 * 13 4 3 15 15 C 1.40869 * 120.08290 * 179.71608 * 2 1 3 16 16 C 1.41145 * 120.15341 * 0.02562 * 15 2 1 17 17 H 1.08004 * 119.99693 * 333.64465 * 16 15 2 18 18 C 1.39858 * 119.99789 * 153.64957 * 16 15 2 19 19 N 1.30909 * 119.99920 * 343.79160 * 18 16 15 20 20 Si 1.86801 * 120.00068 * 163.79606 * 18 16 15 21 21 H 1.48494 * 109.46949 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47269 * 119.99731 * 20 18 16 23 23 H 1.48505 * 109.46753 * 239.99601 * 20 18 16 24 24 H 1.08997 * 109.47755 * 270.28005 * 1 2 3 25 25 H 1.09000 * 109.47549 * 30.28638 * 1 2 3 26 26 H 1.09007 * 109.47219 * 150.28184 * 1 2 3 27 27 H 1.07999 * 119.92452 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00089 * 359.72687 * 5 4 3 29 29 H 1.09000 * 109.47307 * 59.99959 * 6 5 4 30 30 H 1.08998 * 109.47089 * 299.99991 * 6 5 4 31 31 H 1.09007 * 109.46821 * 300.00165 * 7 6 5 32 32 H 1.09000 * 109.47075 * 59.99653 * 7 6 5 33 33 H 1.09000 * 109.46727 * 60.00137 * 9 8 7 34 34 H 1.08995 * 109.47074 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46634 * 300.00387 * 9 8 7 36 36 H 1.09000 * 109.46555 * 289.99576 * 10 8 7 37 37 H 1.08998 * 109.46762 * 49.99238 * 10 8 7 38 38 H 1.09000 * 109.47183 * 299.99317 * 11 10 8 39 39 H 1.08996 * 109.47549 * 59.99587 * 11 10 8 40 40 H 1.00896 * 111.00392 * 179.97438 * 12 11 10 41 41 H 1.00907 * 110.99565 * 303.95045 * 12 11 10 42 42 H 1.07998 * 119.91822 * 180.25446 * 13 4 3 43 43 H 1.08002 * 120.08119 * 180.02562 * 14 13 4 44 44 H 0.96999 * 119.99939 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0053 5 7 4.2751 2.3873 -0.0104 6 6 5.7401 2.3935 -0.0099 7 6 6.2441 3.8380 -0.0154 8 7 7.7131 3.8442 -0.0155 9 6 8.2418 3.2848 -1.2667 10 6 8.2339 5.1979 0.2175 11 6 9.7432 5.1291 0.4586 12 7 10.2639 6.4827 0.6922 13 6 4.2922 -0.0221 0.0002 14 6 3.6221 -1.2092 0.0061 15 6 2.2131 -1.2189 0.0060 16 6 1.5125 -2.4442 0.0116 17 1 0.5167 -2.4949 0.4267 18 6 2.1077 -3.5925 -0.5204 19 7 3.1560 -3.4864 -1.2973 20 14 1.4069 -5.2777 -0.1225 21 1 0.2302 -5.1261 0.7706 22 1 0.9915 -5.9505 -1.3794 23 1 2.4423 -6.0962 0.5583 24 1 -0.3634 0.0050 1.0276 25 1 -0.3634 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6504 2.1153 0.0004 28 1 3.7866 3.2254 -0.0142 29 1 6.1059 1.8773 -0.8975 30 1 6.1053 1.8851 0.8824 31 1 5.8789 4.3469 -0.9076 32 1 5.8783 4.3539 0.8724 33 1 7.8897 3.8810 -2.1086 34 1 9.3313 3.3009 -1.2401 35 1 7.8965 2.2571 -1.3796 36 1 8.0333 5.8195 -0.6552 37 1 7.7456 5.6296 1.0911 38 1 9.9438 4.5076 1.3312 39 1 10.2315 4.6973 -0.4150 40 1 11.2596 6.4642 0.8546 41 1 10.0338 7.0961 -0.0753 42 1 5.3721 -0.0131 0.0002 43 1 4.1698 -2.1400 0.0107 44 1 3.5687 -4.2828 -1.6665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170502863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:26 Heat of formation + Delta-G solvation = 22.664220 kcal Electronic energy + Delta-G solvation = -20850.693030 eV Core-core repulsion = 17802.183329 eV Total energy + Delta-G solvation = -3048.509702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.56759 -37.86549 -35.50337 -34.32735 -33.00394 -31.05015 -29.87239 -28.18881 -27.66664 -26.22491 -24.94631 -23.78556 -21.88131 -21.14706 -20.62240 -19.04610 -17.05976 -16.51834 -16.32523 -15.88719 -15.55409 -14.97173 -14.75402 -14.42918 -14.05638 -13.85706 -13.60208 -13.24095 -12.82133 -12.60594 -12.49712 -12.03648 -11.97226 -11.67475 -11.59909 -11.53838 -11.43018 -11.06533 -11.05360 -10.96526 -10.82079 -10.58336 -10.34919 -9.51356 -9.21658 -9.15222 -9.07741 -8.54069 -8.42012 -7.29024 -6.59166 -6.32539 -3.99543 2.92630 3.10473 3.17519 3.22741 3.38309 3.46935 4.08359 4.36101 4.54854 4.77973 4.80243 4.80915 4.95912 5.12312 5.23921 5.34867 5.38084 5.55422 5.63495 5.71309 5.78944 5.83497 6.13737 6.19790 6.29130 6.34046 6.48661 6.68710 6.74615 6.76456 6.82778 6.87736 6.96987 7.02962 7.07073 7.26852 7.40401 7.65607 7.79109 7.86814 8.19463 8.35396 8.52884 8.74031 8.83339 9.10585 9.19936 10.42091 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030047 B = 0.002976 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.660379 B = 9406.396297 C =10130.802505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.158 4.158 3 C -0.158 4.158 4 C 0.098 3.902 5 N -0.763 5.763 6 C 0.143 3.857 7 C 0.049 3.951 8 N -0.538 5.538 9 C 0.016 3.984 10 C 0.058 3.942 11 C 0.063 3.937 12 N -0.852 5.852 13 C -0.167 4.167 14 C -0.120 4.120 15 C 0.077 3.923 16 C -0.462 4.462 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.810 5.810 20 Si 0.901 3.099 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.275 1.275 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.382 0.618 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.028 0.972 40 H 0.344 0.656 41 H 0.338 0.662 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.030 13.274 0.291 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C -0.181 4.181 4 C 0.001 3.999 5 N -0.399 5.399 6 C 0.017 3.983 7 C -0.079 4.079 8 N -0.262 5.262 9 C -0.132 4.132 10 C -0.071 4.071 11 C -0.068 4.068 12 N -0.382 5.382 13 C -0.189 4.189 14 C -0.140 4.140 15 C 0.074 3.926 16 C -0.493 4.493 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.437 5.437 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.200 1.200 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.214 0.786 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.106 0.894 43 H 0.135 0.865 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.040 12.724 1.175 16.250 hybrid contribution -0.012 -0.151 -1.545 1.552 sum 10.027 12.572 -0.370 16.086 Atomic orbital electron populations 1.20412 0.93690 1.00483 0.99585 1.19309 0.94155 0.92752 1.09810 1.19648 0.91484 0.96429 1.10508 1.17304 0.90566 0.84979 1.07014 1.43761 1.03248 1.05324 1.87559 1.20905 0.82099 0.94374 1.00880 1.22247 0.86650 0.97966 1.01059 1.61772 1.07720 1.21372 1.35361 1.22551 1.00392 1.00868 0.89393 1.22050 0.95250 0.88966 1.00809 1.21790 0.94361 0.90001 1.00641 1.58616 1.19680 1.10646 1.49259 1.20089 0.97144 0.91995 1.09691 1.20911 0.94628 0.96042 1.02384 1.17363 0.91628 0.91637 0.92013 1.19383 1.01995 0.92509 1.35434 0.90710 1.25799 0.94451 1.00872 0.93019 1.69863 1.19375 1.30835 1.23660 0.86386 0.79877 0.82133 0.78980 1.18657 1.20351 1.20038 0.94033 0.94551 0.91931 0.89640 0.78563 0.93512 0.92601 0.94577 0.90398 0.95657 0.91376 0.90433 0.95220 0.89913 0.89968 0.95388 0.84329 0.84992 0.89437 0.86452 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 9.39 36.01 0.34 -1.46 16 2 C -0.16 -3.89 5.90 -104.30 -0.62 -4.51 16 3 C -0.16 -3.61 9.46 -39.77 -0.38 -3.98 16 4 C 0.10 2.18 6.67 -83.69 -0.56 1.62 16 5 N -0.76 -13.53 5.70 -58.50 -0.33 -13.86 16 6 C 0.14 2.21 4.81 -4.04 -0.02 2.19 16 7 C 0.05 0.60 5.07 -3.83 -0.02 0.58 16 8 N -0.54 -6.04 4.76 -242.92 -1.16 -7.20 16 9 C 0.02 0.17 9.13 60.06 0.55 0.71 16 10 C 0.06 0.55 5.22 -3.82 -0.02 0.53 16 11 C 0.06 0.53 6.72 -3.82 -0.03 0.50 16 12 N -0.85 -6.11 9.62 -10.37 -0.10 -6.21 16 13 C -0.17 -4.00 9.23 -39.77 -0.37 -4.37 16 14 C -0.12 -3.18 8.62 -39.27 -0.34 -3.51 16 15 C 0.08 2.07 5.56 -106.79 -0.59 1.47 16 16 C -0.46 -12.45 8.09 -37.87 -0.31 -12.75 16 17 H 0.07 1.95 6.89 -52.48 -0.36 1.59 16 18 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 19 N -0.81 -21.62 10.97 55.54 0.61 -21.01 16 20 Si 0.90 19.36 29.59 -169.99 -5.03 14.33 16 21 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 26 H 0.06 1.36 6.78 -51.93 -0.35 1.01 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.38 5.99 8.47 -40.82 -0.35 5.64 16 29 H 0.05 0.76 6.34 -51.93 -0.33 0.43 16 30 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 31 H 0.04 0.43 8.12 -51.92 -0.42 0.01 16 32 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16 35 H 0.08 0.88 6.47 -51.93 -0.34 0.55 16 36 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 37 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.22 6.47 -51.93 -0.34 -0.11 16 40 H 0.34 1.90 9.08 -39.29 -0.36 1.55 16 41 H 0.34 2.01 8.99 -39.29 -0.35 1.66 16 42 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 43 H 0.12 3.23 6.23 -52.49 -0.33 2.90 16 44 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -28.75 348.59 -10.30 -39.05 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.10 Total: 10.82 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -2.44 Total: -21.17 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.98 Total: -48.27 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.75 -10.30 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170502863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.713 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds