Wall clock time and date at job start Mon Mar 30 2020 02:23:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.36355 * 120.07759 * 2 1
4 4 C 1.39549 * 120.15875 * 180.25301 * 3 2 1
5 5 N 1.38856 * 119.84284 * 179.75888 * 4 3 2
6 6 C 1.46500 * 120.00068 * 179.72580 * 5 4 3
7 7 C 1.52996 * 109.47365 * 180.02562 * 6 5 4
8 8 N 1.46898 * 109.47454 * 180.02562 * 7 6 5
9 9 C 1.46900 * 111.00209 * 66.04174 * 8 7 6
10 10 C 1.46903 * 111.00199 * 190.00068 * 8 7 6
11 11 C 1.52995 * 109.47079 * 169.99875 * 10 8 7
12 12 N 1.46903 * 109.47079 * 180.02562 * 11 10 8
13 13 C 1.39592 * 120.31377 * 359.48298 * 4 3 2
14 14 C 1.36318 * 120.15852 * 0.23177 * 13 4 3
15 15 C 1.40869 * 120.08290 * 179.71608 * 2 1 3
16 16 C 1.41145 * 120.15341 * 0.02562 * 15 2 1
17 17 H 1.08004 * 119.99693 * 333.64465 * 16 15 2
18 18 C 1.39858 * 119.99789 * 153.64957 * 16 15 2
19 19 N 1.30909 * 119.99920 * 343.79160 * 18 16 15
20 20 Si 1.86801 * 120.00068 * 163.79606 * 18 16 15
21 21 H 1.48494 * 109.46949 * 359.97438 * 20 18 16
22 22 H 1.48494 * 109.47269 * 119.99731 * 20 18 16
23 23 H 1.48505 * 109.46753 * 239.99601 * 20 18 16
24 24 H 1.08997 * 109.47755 * 270.28005 * 1 2 3
25 25 H 1.09000 * 109.47549 * 30.28638 * 1 2 3
26 26 H 1.09007 * 109.47219 * 150.28184 * 1 2 3
27 27 H 1.07999 * 119.92452 * 0.02562 * 3 2 1
28 28 H 0.97000 * 120.00089 * 359.72687 * 5 4 3
29 29 H 1.09000 * 109.47307 * 59.99959 * 6 5 4
30 30 H 1.08998 * 109.47089 * 299.99991 * 6 5 4
31 31 H 1.09007 * 109.46821 * 300.00165 * 7 6 5
32 32 H 1.09000 * 109.47075 * 59.99653 * 7 6 5
33 33 H 1.09000 * 109.46727 * 60.00137 * 9 8 7
34 34 H 1.08995 * 109.47074 * 180.02562 * 9 8 7
35 35 H 1.09001 * 109.46634 * 300.00387 * 9 8 7
36 36 H 1.09000 * 109.46555 * 289.99576 * 10 8 7
37 37 H 1.08998 * 109.46762 * 49.99238 * 10 8 7
38 38 H 1.09000 * 109.47183 * 299.99317 * 11 10 8
39 39 H 1.08996 * 109.47549 * 59.99587 * 11 10 8
40 40 H 1.00896 * 111.00392 * 179.97438 * 12 11 10
41 41 H 1.00907 * 110.99565 * 303.95045 * 12 11 10
42 42 H 1.07998 * 119.91822 * 180.25446 * 13 4 3
43 43 H 1.08002 * 120.08119 * 180.02562 * 14 13 4
44 44 H 0.96999 * 119.99939 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1904 1.1799 0.0000
4 6 3.5859 1.1819 -0.0053
5 7 4.2751 2.3873 -0.0104
6 6 5.7401 2.3935 -0.0099
7 6 6.2441 3.8380 -0.0154
8 7 7.7131 3.8442 -0.0155
9 6 8.2418 3.2848 -1.2667
10 6 8.2339 5.1979 0.2175
11 6 9.7432 5.1291 0.4586
12 7 10.2639 6.4827 0.6922
13 6 4.2922 -0.0221 0.0002
14 6 3.6221 -1.2092 0.0061
15 6 2.2131 -1.2189 0.0060
16 6 1.5125 -2.4442 0.0116
17 1 0.5167 -2.4949 0.4267
18 6 2.1077 -3.5925 -0.5204
19 7 3.1560 -3.4864 -1.2973
20 14 1.4069 -5.2777 -0.1225
21 1 0.2302 -5.1261 0.7706
22 1 0.9915 -5.9505 -1.3794
23 1 2.4423 -6.0962 0.5583
24 1 -0.3634 0.0050 1.0276
25 1 -0.3634 0.8874 -0.5183
26 1 -0.3634 -0.8925 -0.5095
27 1 1.6504 2.1153 0.0004
28 1 3.7866 3.2254 -0.0142
29 1 6.1059 1.8773 -0.8975
30 1 6.1053 1.8851 0.8824
31 1 5.8789 4.3469 -0.9076
32 1 5.8783 4.3539 0.8724
33 1 7.8897 3.8810 -2.1086
34 1 9.3313 3.3009 -1.2401
35 1 7.8965 2.2571 -1.3796
36 1 8.0333 5.8195 -0.6552
37 1 7.7456 5.6296 1.0911
38 1 9.9438 4.5076 1.3312
39 1 10.2315 4.6973 -0.4150
40 1 11.2596 6.4642 0.8546
41 1 10.0338 7.0961 -0.0753
42 1 5.3721 -0.0131 0.0002
43 1 4.1698 -2.1400 0.0107
44 1 3.5687 -4.2828 -1.6665
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001170502863.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:23:25
Heat of formation + Delta-G solvation = 2.646741 kcal
Electronic energy + Delta-G solvation = -20851.561053 eV
Core-core repulsion = 17802.183329 eV
Total energy + Delta-G solvation = -3049.377725 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 277.185 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.02106 -39.12677 -36.90791 -35.37966 -34.67936 -32.78539 -31.42631 -29.47405
-28.68033 -27.86519 -26.24789 -25.43645 -23.10358 -22.54464 -21.77067 -20.79170
-18.99053 -17.68892 -17.33921 -17.02563 -16.69814 -16.45357 -16.12742 -15.54149
-15.40460 -15.06082 -14.90382 -14.40935 -14.29524 -14.20419 -13.98541 -13.56468
-13.38276 -13.06186 -12.82935 -12.76775 -12.75262 -12.69845 -12.57670 -12.25575
-12.17661 -12.04338 -11.92121 -11.37478 -11.09898 -11.01352 -10.18899 -9.65577
-9.38797 -9.17705 -8.49693 -8.12238 -5.95904 1.11415 1.20659 1.41273
1.55112 1.59414 2.29179 2.48700 2.88447 3.23961 3.75128 3.84538
3.97897 4.03470 4.07718 4.14947 4.41511 4.46085 4.50957 4.52207
4.54425 4.59828 4.78818 4.83969 4.92241 4.97508 4.99556 5.01134
5.07928 5.09582 5.17131 5.33595 5.35676 5.53439 5.75432 5.92768
5.96383 5.98689 6.00746 6.19635 6.26222 6.45987 6.56743 6.69816
6.90195 7.14298 7.18594 7.34617 8.53481
Molecular weight = 277.18amu
Principal moments of inertia in cm(-1)
A = 0.030047 B = 0.002976 C = 0.002763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 931.660379 B = 9406.396297 C =10130.802505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C -0.166 4.166
3 C -0.168 4.168
4 C 0.115 3.885
5 N -0.751 5.751
6 C 0.145 3.855
7 C 0.061 3.939
8 N -0.549 5.549
9 C 0.017 3.983
10 C 0.061 3.939
11 C 0.069 3.931
12 N -0.857 5.857
13 C -0.182 4.182
14 C -0.142 4.142
15 C 0.035 3.965
16 C -0.492 4.492
17 H 0.073 0.927
18 C 0.028 3.972
19 N -0.846 5.846
20 Si 0.973 3.027
21 H -0.259 1.259
22 H -0.271 1.271
23 H -0.270 1.270
24 H 0.055 0.945
25 H 0.062 0.938
26 H 0.049 0.951
27 H 0.117 0.883
28 H 0.397 0.603
29 H 0.038 0.962
30 H 0.042 0.958
31 H 0.044 0.956
32 H 0.086 0.914
33 H 0.030 0.970
34 H 0.082 0.918
35 H 0.062 0.938
36 H 0.038 0.962
37 H 0.078 0.922
38 H 0.070 0.930
39 H 0.034 0.966
40 H 0.354 0.646
41 H 0.346 0.654
42 H 0.097 0.903
43 H 0.095 0.905
44 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.004 15.114 0.382 18.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.168 4.168
3 C -0.190 4.190
4 C 0.016 3.984
5 N -0.387 5.387
6 C 0.020 3.980
7 C -0.067 4.067
8 N -0.274 5.274
9 C -0.131 4.131
10 C -0.067 4.067
11 C -0.063 4.063
12 N -0.389 5.389
13 C -0.205 4.205
14 C -0.162 4.162
15 C 0.032 3.968
16 C -0.523 4.523
17 H 0.091 0.909
18 C -0.183 4.183
19 N -0.475 5.475
20 Si 0.795 3.205
21 H -0.182 1.182
22 H -0.196 1.196
23 H -0.195 1.195
24 H 0.074 0.926
25 H 0.081 0.919
26 H 0.068 0.932
27 H 0.135 0.865
28 H 0.231 0.769
29 H 0.057 0.943
30 H 0.061 0.939
31 H 0.062 0.938
32 H 0.104 0.896
33 H 0.049 0.951
34 H 0.101 0.899
35 H 0.081 0.919
36 H 0.056 0.944
37 H 0.096 0.904
38 H 0.088 0.912
39 H 0.052 0.948
40 H 0.167 0.833
41 H 0.159 0.841
42 H 0.115 0.885
43 H 0.113 0.887
44 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 10.034 14.622 1.267 17.778
hybrid contribution 0.083 -0.524 -1.567 1.654
sum 10.117 14.098 -0.300 17.355
Atomic orbital electron populations
1.20403 0.91520 1.01144 1.00670 1.19792 0.96088 0.92610 1.08319
1.19978 0.91839 0.97152 1.10075 1.17427 0.90885 0.85926 1.04195
1.43768 1.04314 1.04466 1.86178 1.20937 0.80571 0.96712 0.99797
1.22065 0.87441 0.95396 1.01819 1.61744 1.07056 1.22665 1.35907
1.22546 1.01291 1.00012 0.89249 1.22036 0.95823 0.87937 1.00869
1.21667 0.93689 0.90573 1.00330 1.58582 1.20537 1.10064 1.49732
1.20192 0.97772 0.92100 1.10391 1.20839 0.94927 0.96157 1.04265
1.17719 0.92109 0.92970 0.93968 1.19576 1.02350 0.93607 1.36791
0.90863 1.26613 0.94788 1.04444 0.92448 1.69940 1.20813 1.31998
1.24738 0.85294 0.79134 0.77179 0.78868 1.18229 1.19575 1.19541
0.92631 0.91875 0.93194 0.86490 0.76855 0.94345 0.93924 0.93794
0.89586 0.95144 0.89946 0.91888 0.94426 0.90398 0.91162 0.94803
0.83253 0.84086 0.88459 0.88689 0.91063
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -3.32 9.39 71.24 0.67 -2.65 16
2 C -0.17 -8.12 5.90 -19.66 -0.12 -8.24 16
3 C -0.17 -7.38 9.46 22.15 0.21 -7.17 16
4 C 0.12 4.99 6.67 38.67 0.26 5.25 16
5 N -0.75 -25.15 5.70 -338.99 -1.93 -27.08 16
6 C 0.15 4.29 4.81 86.38 0.42 4.70 16
7 C 0.06 1.36 5.07 86.30 0.44 1.79 16
8 N -0.55 -11.35 4.76 -922.47 -4.39 -15.74 16
9 C 0.02 0.33 9.13 127.69 1.17 1.49 16
10 C 0.06 1.04 5.22 86.30 0.45 1.49 16
11 C 0.07 1.02 6.72 86.30 0.58 1.60 16
12 N -0.86 -10.57 9.62 -186.72 -1.80 -12.37 16
13 C -0.18 -8.86 9.23 22.15 0.20 -8.66 16
14 C -0.14 -7.82 8.62 22.47 0.19 -7.63 16
15 C 0.04 1.95 5.56 -21.27 -0.12 1.84 16
16 C -0.49 -27.32 8.09 23.38 0.19 -27.13 16
17 H 0.07 3.92 6.89 -2.91 -0.02 3.90 16
18 C 0.03 1.49 5.15 85.22 0.44 1.93 16
19 N -0.85 -46.90 10.97 21.81 0.24 -46.66 16
20 Si 0.97 40.58 29.59 68.60 2.03 42.61 16
21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16
22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16
23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16
24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16
25 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16
26 H 0.05 2.16 6.78 -2.38 -0.02 2.14 16
27 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16
28 H 0.40 11.21 8.47 -92.71 -0.79 10.43 16
29 H 0.04 1.22 6.34 -2.39 -0.02 1.21 16
30 H 0.04 1.40 7.93 -2.39 -0.02 1.38 16
31 H 0.04 0.92 8.12 -2.38 -0.02 0.91 16
32 H 0.09 1.79 7.93 -2.39 -0.02 1.77 16
33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.08 1.33 6.30 -2.39 -0.02 1.31 16
35 H 0.06 1.39 6.47 -2.39 -0.02 1.38 16
36 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16
37 H 0.08 1.41 7.93 -2.39 -0.02 1.39 16
38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
39 H 0.03 0.47 6.47 -2.39 -0.02 0.45 16
40 H 0.35 3.24 9.08 -89.70 -0.81 2.43 16
41 H 0.35 3.35 8.99 -89.69 -0.81 2.55 16
42 H 0.10 4.40 6.68 -2.91 -0.02 4.38 16
43 H 0.10 5.55 6.23 -2.91 -0.02 5.54 16
44 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16
Total: -1.00 -63.08 348.59 -2.26 -65.34
By element:
Atomic # 1 Polarization: 36.67 SS G_CDS: -1.39 Total: 35.29 kcal
Atomic # 6 Polarization: -46.35 SS G_CDS: 4.98 Total: -41.38 kcal
Atomic # 7 Polarization: -93.97 SS G_CDS: -7.88 Total: -101.86 kcal
Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal
Total: -63.08 -2.26 -65.34 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001170502863.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.987 kcal
(2) G-P(sol) polarization free energy of solvation -63.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.647 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds