Wall clock time and date at job start Mon Mar 30 2020 02:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36355 * 120.07759 * 2 1 4 4 C 1.39549 * 120.15875 * 180.25301 * 3 2 1 5 5 N 1.38856 * 119.84284 * 179.75888 * 4 3 2 6 6 C 1.46500 * 120.00068 * 179.72580 * 5 4 3 7 7 C 1.52996 * 109.47365 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47454 * 180.02562 * 7 6 5 9 9 C 1.46900 * 111.00209 * 66.04174 * 8 7 6 10 10 C 1.46903 * 111.00199 * 190.00068 * 8 7 6 11 11 C 1.52995 * 109.47079 * 169.99875 * 10 8 7 12 12 N 1.46903 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.39592 * 120.31377 * 359.48298 * 4 3 2 14 14 C 1.36318 * 120.15852 * 0.23177 * 13 4 3 15 15 C 1.40869 * 120.08290 * 179.71608 * 2 1 3 16 16 C 1.41145 * 120.15341 * 0.02562 * 15 2 1 17 17 H 1.08004 * 119.99693 * 333.64465 * 16 15 2 18 18 C 1.39858 * 119.99789 * 153.64957 * 16 15 2 19 19 N 1.30909 * 119.99920 * 343.79160 * 18 16 15 20 20 Si 1.86801 * 120.00068 * 163.79606 * 18 16 15 21 21 H 1.48494 * 109.46949 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47269 * 119.99731 * 20 18 16 23 23 H 1.48505 * 109.46753 * 239.99601 * 20 18 16 24 24 H 1.08997 * 109.47755 * 270.28005 * 1 2 3 25 25 H 1.09000 * 109.47549 * 30.28638 * 1 2 3 26 26 H 1.09007 * 109.47219 * 150.28184 * 1 2 3 27 27 H 1.07999 * 119.92452 * 0.02562 * 3 2 1 28 28 H 0.97000 * 120.00089 * 359.72687 * 5 4 3 29 29 H 1.09000 * 109.47307 * 59.99959 * 6 5 4 30 30 H 1.08998 * 109.47089 * 299.99991 * 6 5 4 31 31 H 1.09007 * 109.46821 * 300.00165 * 7 6 5 32 32 H 1.09000 * 109.47075 * 59.99653 * 7 6 5 33 33 H 1.09000 * 109.46727 * 60.00137 * 9 8 7 34 34 H 1.08995 * 109.47074 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.46634 * 300.00387 * 9 8 7 36 36 H 1.09000 * 109.46555 * 289.99576 * 10 8 7 37 37 H 1.08998 * 109.46762 * 49.99238 * 10 8 7 38 38 H 1.09000 * 109.47183 * 299.99317 * 11 10 8 39 39 H 1.08996 * 109.47549 * 59.99587 * 11 10 8 40 40 H 1.00896 * 111.00392 * 179.97438 * 12 11 10 41 41 H 1.00907 * 110.99565 * 303.95045 * 12 11 10 42 42 H 1.07998 * 119.91822 * 180.25446 * 13 4 3 43 43 H 1.08002 * 120.08119 * 180.02562 * 14 13 4 44 44 H 0.96999 * 119.99939 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0053 5 7 4.2751 2.3873 -0.0104 6 6 5.7401 2.3935 -0.0099 7 6 6.2441 3.8380 -0.0154 8 7 7.7131 3.8442 -0.0155 9 6 8.2418 3.2848 -1.2667 10 6 8.2339 5.1979 0.2175 11 6 9.7432 5.1291 0.4586 12 7 10.2639 6.4827 0.6922 13 6 4.2922 -0.0221 0.0002 14 6 3.6221 -1.2092 0.0061 15 6 2.2131 -1.2189 0.0060 16 6 1.5125 -2.4442 0.0116 17 1 0.5167 -2.4949 0.4267 18 6 2.1077 -3.5925 -0.5204 19 7 3.1560 -3.4864 -1.2973 20 14 1.4069 -5.2777 -0.1225 21 1 0.2302 -5.1261 0.7706 22 1 0.9915 -5.9505 -1.3794 23 1 2.4423 -6.0962 0.5583 24 1 -0.3634 0.0050 1.0276 25 1 -0.3634 0.8874 -0.5183 26 1 -0.3634 -0.8925 -0.5095 27 1 1.6504 2.1153 0.0004 28 1 3.7866 3.2254 -0.0142 29 1 6.1059 1.8773 -0.8975 30 1 6.1053 1.8851 0.8824 31 1 5.8789 4.3469 -0.9076 32 1 5.8783 4.3539 0.8724 33 1 7.8897 3.8810 -2.1086 34 1 9.3313 3.3009 -1.2401 35 1 7.8965 2.2571 -1.3796 36 1 8.0333 5.8195 -0.6552 37 1 7.7456 5.6296 1.0911 38 1 9.9438 4.5076 1.3312 39 1 10.2315 4.6973 -0.4150 40 1 11.2596 6.4642 0.8546 41 1 10.0338 7.0961 -0.0753 42 1 5.3721 -0.0131 0.0002 43 1 4.1698 -2.1400 0.0107 44 1 3.5687 -4.2828 -1.6665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170502863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:25 Heat of formation + Delta-G solvation = 2.646741 kcal Electronic energy + Delta-G solvation = -20851.561053 eV Core-core repulsion = 17802.183329 eV Total energy + Delta-G solvation = -3049.377725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02106 -39.12677 -36.90791 -35.37966 -34.67936 -32.78539 -31.42631 -29.47405 -28.68033 -27.86519 -26.24789 -25.43645 -23.10358 -22.54464 -21.77067 -20.79170 -18.99053 -17.68892 -17.33921 -17.02563 -16.69814 -16.45357 -16.12742 -15.54149 -15.40460 -15.06082 -14.90382 -14.40935 -14.29524 -14.20419 -13.98541 -13.56468 -13.38276 -13.06186 -12.82935 -12.76775 -12.75262 -12.69845 -12.57670 -12.25575 -12.17661 -12.04338 -11.92121 -11.37478 -11.09898 -11.01352 -10.18899 -9.65577 -9.38797 -9.17705 -8.49693 -8.12238 -5.95904 1.11415 1.20659 1.41273 1.55112 1.59414 2.29179 2.48700 2.88447 3.23961 3.75128 3.84538 3.97897 4.03470 4.07718 4.14947 4.41511 4.46085 4.50957 4.52207 4.54425 4.59828 4.78818 4.83969 4.92241 4.97508 4.99556 5.01134 5.07928 5.09582 5.17131 5.33595 5.35676 5.53439 5.75432 5.92768 5.96383 5.98689 6.00746 6.19635 6.26222 6.45987 6.56743 6.69816 6.90195 7.14298 7.18594 7.34617 8.53481 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030047 B = 0.002976 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.660379 B = 9406.396297 C =10130.802505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.166 4.166 3 C -0.168 4.168 4 C 0.115 3.885 5 N -0.751 5.751 6 C 0.145 3.855 7 C 0.061 3.939 8 N -0.549 5.549 9 C 0.017 3.983 10 C 0.061 3.939 11 C 0.069 3.931 12 N -0.857 5.857 13 C -0.182 4.182 14 C -0.142 4.142 15 C 0.035 3.965 16 C -0.492 4.492 17 H 0.073 0.927 18 C 0.028 3.972 19 N -0.846 5.846 20 Si 0.973 3.027 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.270 1.270 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.397 0.603 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.354 0.646 41 H 0.346 0.654 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 15.114 0.382 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.190 4.190 4 C 0.016 3.984 5 N -0.387 5.387 6 C 0.020 3.980 7 C -0.067 4.067 8 N -0.274 5.274 9 C -0.131 4.131 10 C -0.067 4.067 11 C -0.063 4.063 12 N -0.389 5.389 13 C -0.205 4.205 14 C -0.162 4.162 15 C 0.032 3.968 16 C -0.523 4.523 17 H 0.091 0.909 18 C -0.183 4.183 19 N -0.475 5.475 20 Si 0.795 3.205 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.195 1.195 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.231 0.769 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.034 14.622 1.267 17.778 hybrid contribution 0.083 -0.524 -1.567 1.654 sum 10.117 14.098 -0.300 17.355 Atomic orbital electron populations 1.20403 0.91520 1.01144 1.00670 1.19792 0.96088 0.92610 1.08319 1.19978 0.91839 0.97152 1.10075 1.17427 0.90885 0.85926 1.04195 1.43768 1.04314 1.04466 1.86178 1.20937 0.80571 0.96712 0.99797 1.22065 0.87441 0.95396 1.01819 1.61744 1.07056 1.22665 1.35907 1.22546 1.01291 1.00012 0.89249 1.22036 0.95823 0.87937 1.00869 1.21667 0.93689 0.90573 1.00330 1.58582 1.20537 1.10064 1.49732 1.20192 0.97772 0.92100 1.10391 1.20839 0.94927 0.96157 1.04265 1.17719 0.92109 0.92970 0.93968 1.19576 1.02350 0.93607 1.36791 0.90863 1.26613 0.94788 1.04444 0.92448 1.69940 1.20813 1.31998 1.24738 0.85294 0.79134 0.77179 0.78868 1.18229 1.19575 1.19541 0.92631 0.91875 0.93194 0.86490 0.76855 0.94345 0.93924 0.93794 0.89586 0.95144 0.89946 0.91888 0.94426 0.90398 0.91162 0.94803 0.83253 0.84086 0.88459 0.88689 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.39 71.24 0.67 -2.65 16 2 C -0.17 -8.12 5.90 -19.66 -0.12 -8.24 16 3 C -0.17 -7.38 9.46 22.15 0.21 -7.17 16 4 C 0.12 4.99 6.67 38.67 0.26 5.25 16 5 N -0.75 -25.15 5.70 -338.99 -1.93 -27.08 16 6 C 0.15 4.29 4.81 86.38 0.42 4.70 16 7 C 0.06 1.36 5.07 86.30 0.44 1.79 16 8 N -0.55 -11.35 4.76 -922.47 -4.39 -15.74 16 9 C 0.02 0.33 9.13 127.69 1.17 1.49 16 10 C 0.06 1.04 5.22 86.30 0.45 1.49 16 11 C 0.07 1.02 6.72 86.30 0.58 1.60 16 12 N -0.86 -10.57 9.62 -186.72 -1.80 -12.37 16 13 C -0.18 -8.86 9.23 22.15 0.20 -8.66 16 14 C -0.14 -7.82 8.62 22.47 0.19 -7.63 16 15 C 0.04 1.95 5.56 -21.27 -0.12 1.84 16 16 C -0.49 -27.32 8.09 23.38 0.19 -27.13 16 17 H 0.07 3.92 6.89 -2.91 -0.02 3.90 16 18 C 0.03 1.49 5.15 85.22 0.44 1.93 16 19 N -0.85 -46.90 10.97 21.81 0.24 -46.66 16 20 Si 0.97 40.58 29.59 68.60 2.03 42.61 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 26 H 0.05 2.16 6.78 -2.38 -0.02 2.14 16 27 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 28 H 0.40 11.21 8.47 -92.71 -0.79 10.43 16 29 H 0.04 1.22 6.34 -2.39 -0.02 1.21 16 30 H 0.04 1.40 7.93 -2.39 -0.02 1.38 16 31 H 0.04 0.92 8.12 -2.38 -0.02 0.91 16 32 H 0.09 1.79 7.93 -2.39 -0.02 1.77 16 33 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 1.33 6.30 -2.39 -0.02 1.31 16 35 H 0.06 1.39 6.47 -2.39 -0.02 1.38 16 36 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 37 H 0.08 1.41 7.93 -2.39 -0.02 1.39 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.03 0.47 6.47 -2.39 -0.02 0.45 16 40 H 0.35 3.24 9.08 -89.70 -0.81 2.43 16 41 H 0.35 3.35 8.99 -89.69 -0.81 2.55 16 42 H 0.10 4.40 6.68 -2.91 -0.02 4.38 16 43 H 0.10 5.55 6.23 -2.91 -0.02 5.54 16 44 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 Total: -1.00 -63.08 348.59 -2.26 -65.34 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -1.39 Total: 35.29 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 4.98 Total: -41.38 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -7.88 Total: -101.86 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -63.08 -2.26 -65.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170502863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.987 kcal (2) G-P(sol) polarization free energy of solvation -63.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds