Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47225 * 2 1 4 4 C 1.42901 * 114.00085 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46659 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47496 * 55.98627 * 6 5 4 8 8 C 1.53005 * 109.46660 * 175.98479 * 6 5 4 9 9 N 1.46493 * 109.47166 * 295.98359 * 6 5 4 10 10 C 1.36944 * 119.99963 * 303.67086 * 9 6 5 11 11 H 1.07998 * 119.99686 * 41.90045 * 10 9 6 12 12 C 1.38813 * 120.00101 * 221.89696 * 10 9 6 13 13 N 1.31618 * 120.00057 * 212.48640 * 12 10 9 14 14 Si 1.86804 * 119.99831 * 32.48611 * 12 10 9 15 15 H 1.48496 * 109.47180 * 88.52773 * 14 12 10 16 16 H 1.48505 * 109.46895 * 208.52798 * 14 12 10 17 17 H 1.48495 * 109.47077 * 328.52385 * 14 12 10 18 18 C 1.46499 * 120.00188 * 123.67619 * 9 6 5 19 19 C 1.50706 * 109.46683 * 270.73221 * 18 9 6 20 20 C 1.38233 * 119.99998 * 269.72190 * 19 18 9 21 21 C 1.38239 * 120.00011 * 179.76813 * 20 19 18 22 22 C 1.38227 * 119.99794 * 0.50968 * 21 20 19 23 23 C 1.38244 * 120.00132 * 359.74449 * 22 21 20 24 24 C 1.38228 * 119.99733 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47345 * 59.99824 * 1 2 3 26 26 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46785 * 299.99953 * 1 2 3 28 28 H 1.09000 * 109.47106 * 240.00440 * 2 1 3 29 29 H 1.08998 * 109.47345 * 120.00176 * 2 1 3 30 30 H 1.08998 * 109.47436 * 59.99575 * 4 3 2 31 31 H 1.08999 * 109.46553 * 299.99734 * 4 3 2 32 32 H 1.08998 * 109.47564 * 59.99442 * 5 4 3 33 33 H 1.09005 * 109.46619 * 299.99709 * 5 4 3 34 34 H 1.08997 * 109.46863 * 184.24358 * 8 6 5 35 35 H 1.09001 * 109.47330 * 304.24349 * 8 6 5 36 36 H 1.08996 * 109.47146 * 64.24286 * 8 6 5 37 37 H 0.97001 * 119.99759 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.47495 * 150.73281 * 18 9 6 39 39 H 1.08998 * 109.47191 * 30.72971 * 18 9 6 40 40 H 1.08003 * 120.00016 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.99582 * 180.22903 * 21 20 19 42 42 H 1.08004 * 120.00100 * 179.72306 * 22 21 20 43 43 H 1.08004 * 119.99829 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.99955 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 6 5.3506 3.0591 0.0001 7 1 5.7582 2.5152 -0.8519 8 6 5.7454 4.5340 -0.1002 9 7 5.8852 2.4939 1.2414 10 6 5.4547 2.9692 2.4514 11 1 4.4072 3.1816 2.6063 12 6 6.3646 3.1779 3.4787 13 7 5.9954 3.0048 4.7301 14 14 8.1131 3.7044 3.0850 15 1 8.1804 5.1863 3.0167 16 1 9.0283 3.2158 4.1476 17 1 8.5207 3.1296 1.7779 18 6 6.8805 1.4202 1.1883 19 6 6.1794 0.0864 1.1607 20 6 5.8866 -0.5652 2.3441 21 6 5.2393 -1.7864 2.3190 22 6 4.8941 -2.3608 1.1100 23 6 5.1916 -1.7117 -0.0737 24 6 5.8347 -0.4883 -0.0483 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8334 0.9767 -0.8907 31 1 3.8340 0.9765 0.8892 32 1 3.4230 3.4215 0.8905 33 1 3.4222 3.4224 -0.8895 34 1 6.8297 4.6155 -0.1761 35 1 5.2851 4.9740 -0.9849 36 1 5.4026 5.0631 0.7889 37 1 6.6313 3.1503 5.4480 38 1 7.5218 1.4754 2.0679 39 1 7.4866 1.5307 0.2892 40 1 6.1600 -0.1183 3.2886 41 1 5.0073 -2.2937 3.2437 42 1 4.3923 -3.3170 1.0901 43 1 4.9223 -2.1607 -1.0183 44 1 6.0675 0.0187 -0.9731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172430574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -9.985313 kcal Electronic energy + Delta-G solvation = -23052.440107 eV Core-core repulsion = 19970.221864 eV Total energy + Delta-G solvation = -3082.218243 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.92833 -37.60507 -36.47379 -32.92135 -31.80844 -31.18291 -30.33390 -29.48610 -27.93279 -25.56218 -23.62235 -22.46986 -22.26486 -21.88415 -20.68003 -19.36994 -16.83122 -16.10814 -15.90086 -15.77816 -15.08273 -14.83892 -14.60444 -14.21007 -14.03404 -13.41111 -13.10814 -13.00862 -12.81178 -12.46966 -12.29691 -12.24320 -11.97798 -11.71059 -11.57125 -11.44188 -10.94950 -10.87542 -10.69476 -10.68708 -10.48307 -10.28791 -10.21453 -10.08937 -9.77633 -9.54047 -9.03244 -8.44212 -8.33865 -8.10263 -6.75994 -6.10217 -3.42957 1.92562 1.97571 3.35026 3.47171 3.51458 4.16068 4.31657 4.53174 5.04011 5.25395 5.26187 5.36980 5.41534 5.42162 5.52332 5.56926 5.71920 5.74331 5.80503 5.91610 5.98854 6.02049 6.09332 6.10975 6.15510 6.24076 6.26907 6.27594 6.39988 6.47458 6.55755 6.63722 6.69726 6.77106 6.79150 6.97977 7.03211 7.09063 7.13282 7.38012 7.60138 7.76338 8.01325 8.44813 8.99098 9.69125 10.14325 11.04754 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.007684 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.272088 B = 3643.011726 C = 4431.518289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.397 6.397 4 C 0.072 3.928 5 C -0.122 4.122 6 C 0.174 3.826 7 H 0.049 0.951 8 C -0.155 4.155 9 N -0.587 5.587 10 C -0.270 4.270 11 H 0.076 0.924 12 C 0.053 3.947 13 N -0.877 5.877 14 Si 0.847 3.153 15 H -0.288 1.288 16 H -0.298 1.298 17 H -0.263 1.263 18 C 0.179 3.821 19 C -0.077 4.077 20 C -0.091 4.091 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.132 4.132 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.263 0.737 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -7.527 -9.810 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.317 6.317 4 C -0.004 4.004 5 C -0.161 4.161 6 C 0.067 3.933 7 H 0.068 0.932 8 C -0.214 4.214 9 N -0.308 5.308 10 C -0.398 4.398 11 H 0.093 0.907 12 C -0.150 4.150 13 N -0.515 5.515 14 Si 0.674 3.326 15 H -0.216 1.216 16 H -0.225 1.225 17 H -0.187 1.187 18 C 0.053 3.947 19 C -0.080 4.080 20 C -0.110 4.110 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.139 4.139 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.087 -7.321 -9.610 12.469 hybrid contribution 1.107 0.080 -0.003 1.109 sum -1.981 -7.241 -9.613 12.197 Atomic orbital electron populations 1.21730 0.94547 1.01583 1.02769 1.22288 0.94742 0.84788 0.99670 1.87810 1.22945 1.25459 1.95462 1.22649 0.79215 0.98219 1.00315 1.21876 0.97669 0.94536 1.01988 1.20363 0.91355 0.92863 0.88697 0.93237 1.22126 1.00237 0.98048 1.00950 1.44142 1.49224 1.35372 1.02106 1.18518 0.93177 1.41148 0.86920 0.90694 1.25550 0.97276 0.97395 0.94784 1.70057 1.36202 1.45908 0.99338 0.87388 0.87197 0.79724 0.78334 1.21564 1.22450 1.18727 1.20310 0.90665 0.83893 0.99812 1.20992 0.98111 0.96508 0.92409 1.21190 0.97260 0.93787 0.98770 1.21104 0.99507 0.96369 0.97334 1.20918 1.02107 0.99831 0.92871 1.20937 1.00599 0.96043 0.97406 1.20943 1.00029 0.95477 0.97413 0.92296 0.91681 0.91961 0.94304 0.93638 0.95064 0.91233 0.90472 0.92977 0.93754 0.94136 0.91490 0.92733 0.91936 0.93773 0.85647 0.86998 0.87335 0.87379 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 37.16 0.38 -1.47 16 2 C 0.06 0.94 6.66 37.16 0.25 1.19 16 3 O -0.40 -7.38 10.34 -35.23 -0.36 -7.74 16 4 C 0.07 1.34 4.79 37.16 0.18 1.51 16 5 C -0.12 -2.28 4.92 -26.73 -0.13 -2.41 16 6 C 0.17 3.28 2.76 -67.93 -0.19 3.09 16 7 H 0.05 0.86 7.83 -51.93 -0.41 0.45 16 8 C -0.15 -2.81 9.28 37.16 0.34 -2.46 16 9 N -0.59 -12.75 1.30 -167.02 -0.22 -12.97 16 10 C -0.27 -6.92 8.47 -15.06 -0.13 -7.05 16 11 H 0.08 2.15 6.86 -52.49 -0.36 1.79 16 12 C 0.05 1.41 5.03 -17.43 -0.09 1.33 16 13 N -0.88 -25.15 13.97 55.49 0.78 -24.38 16 14 Si 0.85 20.56 26.56 -169.99 -4.52 16.04 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.26 -6.04 5.85 56.52 0.33 -5.70 16 18 C 0.18 3.66 4.17 -5.19 -0.02 3.64 16 19 C -0.08 -1.45 4.06 -104.62 -0.43 -1.88 16 20 C -0.09 -1.76 9.70 -39.58 -0.38 -2.14 16 21 C -0.12 -2.08 10.05 -39.58 -0.40 -2.47 16 22 C -0.14 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 24 C -0.12 -1.95 7.45 -39.59 -0.29 -2.25 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.54 7.27 -51.93 -0.38 0.16 16 31 H 0.07 1.48 5.90 -51.93 -0.31 1.17 16 32 H 0.08 1.65 6.74 -51.93 -0.35 1.30 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.35 7.61 -51.93 -0.40 0.95 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 1.39 4.77 -51.93 -0.25 1.15 16 39 H 0.04 0.83 7.91 -51.93 -0.41 0.42 16 40 H 0.13 2.67 8.06 -52.48 -0.42 2.25 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 44 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -27.99 348.59 -8.33 -36.32 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.56 Total: 3.65 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.70 Total: -16.17 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.56 Total: -37.34 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.36 Total: -7.74 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.52 Total: 16.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.99 -8.33 -36.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172430574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.332 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds