Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47225 * 2 1 4 4 C 1.42901 * 114.00085 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46659 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47496 * 55.98627 * 6 5 4 8 8 C 1.53005 * 109.46660 * 175.98479 * 6 5 4 9 9 N 1.46493 * 109.47166 * 295.98359 * 6 5 4 10 10 C 1.36944 * 119.99963 * 303.67086 * 9 6 5 11 11 H 1.07998 * 119.99686 * 41.90045 * 10 9 6 12 12 C 1.38813 * 120.00101 * 221.89696 * 10 9 6 13 13 N 1.31618 * 120.00057 * 212.48640 * 12 10 9 14 14 Si 1.86804 * 119.99831 * 32.48611 * 12 10 9 15 15 H 1.48496 * 109.47180 * 88.52773 * 14 12 10 16 16 H 1.48505 * 109.46895 * 208.52798 * 14 12 10 17 17 H 1.48495 * 109.47077 * 328.52385 * 14 12 10 18 18 C 1.46499 * 120.00188 * 123.67619 * 9 6 5 19 19 C 1.50706 * 109.46683 * 270.73221 * 18 9 6 20 20 C 1.38233 * 119.99998 * 269.72190 * 19 18 9 21 21 C 1.38239 * 120.00011 * 179.76813 * 20 19 18 22 22 C 1.38227 * 119.99794 * 0.50968 * 21 20 19 23 23 C 1.38244 * 120.00132 * 359.74449 * 22 21 20 24 24 C 1.38228 * 119.99733 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.47345 * 59.99824 * 1 2 3 26 26 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46785 * 299.99953 * 1 2 3 28 28 H 1.09000 * 109.47106 * 240.00440 * 2 1 3 29 29 H 1.08998 * 109.47345 * 120.00176 * 2 1 3 30 30 H 1.08998 * 109.47436 * 59.99575 * 4 3 2 31 31 H 1.08999 * 109.46553 * 299.99734 * 4 3 2 32 32 H 1.08998 * 109.47564 * 59.99442 * 5 4 3 33 33 H 1.09005 * 109.46619 * 299.99709 * 5 4 3 34 34 H 1.08997 * 109.46863 * 184.24358 * 8 6 5 35 35 H 1.09001 * 109.47330 * 304.24349 * 8 6 5 36 36 H 1.08996 * 109.47146 * 64.24286 * 8 6 5 37 37 H 0.97001 * 119.99759 * 179.97438 * 13 12 10 38 38 H 1.08996 * 109.47495 * 150.73281 * 18 9 6 39 39 H 1.08998 * 109.47191 * 30.72971 * 18 9 6 40 40 H 1.08003 * 120.00016 * 0.02562 * 20 19 18 41 41 H 1.07996 * 119.99582 * 180.22903 * 21 20 19 42 42 H 1.08004 * 120.00100 * 179.72306 * 22 21 20 43 43 H 1.08004 * 119.99829 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.99955 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 6 5.3506 3.0591 0.0001 7 1 5.7582 2.5152 -0.8519 8 6 5.7454 4.5340 -0.1002 9 7 5.8852 2.4939 1.2414 10 6 5.4547 2.9692 2.4514 11 1 4.4072 3.1816 2.6063 12 6 6.3646 3.1779 3.4787 13 7 5.9954 3.0048 4.7301 14 14 8.1131 3.7044 3.0850 15 1 8.1804 5.1863 3.0167 16 1 9.0283 3.2158 4.1476 17 1 8.5207 3.1296 1.7779 18 6 6.8805 1.4202 1.1883 19 6 6.1794 0.0864 1.1607 20 6 5.8866 -0.5652 2.3441 21 6 5.2393 -1.7864 2.3190 22 6 4.8941 -2.3608 1.1100 23 6 5.1916 -1.7117 -0.0737 24 6 5.8347 -0.4883 -0.0483 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8334 0.9767 -0.8907 31 1 3.8340 0.9765 0.8892 32 1 3.4230 3.4215 0.8905 33 1 3.4222 3.4224 -0.8895 34 1 6.8297 4.6155 -0.1761 35 1 5.2851 4.9740 -0.9849 36 1 5.4026 5.0631 0.7889 37 1 6.6313 3.1503 5.4480 38 1 7.5218 1.4754 2.0679 39 1 7.4866 1.5307 0.2892 40 1 6.1600 -0.1183 3.2886 41 1 5.0073 -2.2937 3.2437 42 1 4.3923 -3.3170 1.0901 43 1 4.9223 -2.1607 -1.0183 44 1 6.0675 0.0187 -0.9731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172430574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -24.181377 kcal Electronic energy + Delta-G solvation = -23053.055694 eV Core-core repulsion = 19970.221864 eV Total energy + Delta-G solvation = -3082.833830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.32462 -38.98690 -38.02209 -34.60289 -33.55874 -32.41020 -31.63351 -31.01447 -29.37870 -27.28716 -25.29174 -23.76437 -23.60580 -23.23777 -22.07683 -21.06996 -18.54668 -17.49361 -17.31212 -17.21533 -16.84562 -16.39656 -15.97817 -15.68811 -15.43543 -14.90729 -14.68486 -14.55237 -14.16837 -14.03220 -13.82574 -13.51385 -13.30698 -13.06619 -13.01597 -12.89458 -12.65108 -12.44787 -12.25752 -12.07420 -11.89861 -11.81967 -11.68476 -11.65307 -11.42139 -11.28846 -10.49436 -10.42443 -9.63777 -9.44920 -8.59230 -8.19933 -5.48040 0.62805 0.66526 1.36948 1.45911 1.52322 2.48576 2.86692 2.90580 3.17293 3.54072 4.09004 4.15928 4.17707 4.19134 4.29134 4.34294 4.39521 4.44164 4.49051 4.51828 4.54288 4.67012 4.74506 4.78499 4.88263 4.91009 4.93194 5.02364 5.03965 5.07033 5.21678 5.24170 5.29293 5.30493 5.32904 5.50589 5.60220 5.71084 5.76282 5.97850 6.01629 6.29366 6.36029 6.42283 7.09760 7.72424 8.18206 9.00121 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.007684 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.272088 B = 3643.011726 C = 4431.518289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 O -0.418 6.418 4 C 0.083 3.917 5 C -0.116 4.116 6 C 0.170 3.830 7 H 0.081 0.919 8 C -0.151 4.151 9 N -0.593 5.593 10 C -0.240 4.240 11 H 0.031 0.969 12 C 0.002 3.998 13 N -0.929 5.929 14 Si 0.905 3.095 15 H -0.296 1.296 16 H -0.308 1.308 17 H -0.237 1.237 18 C 0.176 3.824 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.117 4.117 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -9.374 -13.893 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.339 6.339 4 C 0.007 3.993 5 C -0.155 4.155 6 C 0.064 3.936 7 H 0.099 0.901 8 C -0.209 4.209 9 N -0.314 5.314 10 C -0.370 4.370 11 H 0.048 0.952 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.732 3.268 15 H -0.224 1.224 16 H -0.235 1.235 17 H -0.161 1.161 18 C 0.051 3.949 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.136 4.136 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.210 -9.181 -13.741 16.835 hybrid contribution 1.006 0.528 1.206 1.657 sum -2.204 -8.654 -12.534 15.390 Atomic orbital electron populations 1.21747 0.92541 1.03386 1.02515 1.22532 0.96439 0.83235 0.99912 1.87793 1.22762 1.27791 1.95530 1.22454 0.79507 0.97591 0.99736 1.21806 0.97642 0.94944 1.01149 1.20570 0.91261 0.93640 0.88101 0.90085 1.22080 1.00532 0.97277 1.01038 1.44186 1.49260 1.36269 1.01722 1.18190 0.91097 1.39234 0.88496 0.95173 1.25992 1.00688 0.98431 0.94511 1.70165 1.37472 1.49121 1.00346 0.86439 0.82984 0.78519 0.78854 1.22364 1.23543 1.16054 1.20303 0.90385 0.84558 0.99673 1.20778 0.99160 0.96123 0.93372 1.21037 0.99762 0.95599 0.97630 1.21271 0.99230 0.95512 0.99124 1.21305 1.00795 1.00787 0.91943 1.21363 0.98741 0.95064 0.98878 1.21134 0.99519 0.96121 0.96826 0.91555 0.88852 0.93218 0.92204 0.95047 0.92736 0.94408 0.94418 0.90561 0.93523 0.90800 0.94587 0.93177 0.94620 0.91200 0.89704 0.86028 0.83950 0.83611 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 10.28 71.98 0.74 -2.50 16 2 C 0.06 1.55 6.66 71.98 0.48 2.03 16 3 O -0.42 -15.02 10.34 -148.98 -1.54 -16.56 16 4 C 0.08 2.96 4.79 71.98 0.34 3.31 16 5 C -0.12 -4.26 4.92 30.60 0.15 -4.11 16 6 C 0.17 6.11 2.76 44.99 0.12 6.23 16 7 H 0.08 2.46 7.83 -2.39 -0.02 2.44 16 8 C -0.15 -5.19 9.28 71.98 0.67 -4.52 16 9 N -0.59 -25.79 1.30 -682.34 -0.89 -26.68 16 10 C -0.24 -12.97 8.47 84.03 0.71 -12.26 16 11 H 0.03 1.89 6.86 -2.91 -0.02 1.87 16 12 C 0.00 0.12 5.03 84.86 0.43 0.54 16 13 N -0.93 -56.94 13.97 21.65 0.30 -56.64 16 14 Si 0.90 44.13 26.56 68.60 1.82 45.96 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 17 H -0.24 -10.45 5.85 99.48 0.58 -9.86 16 18 C 0.18 7.08 4.17 85.64 0.36 7.44 16 19 C -0.09 -3.38 4.06 -19.86 -0.08 -3.46 16 20 C -0.12 -4.83 9.70 22.27 0.22 -4.61 16 21 C -0.13 -4.35 10.05 22.27 0.22 -4.13 16 22 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 23 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 24 C -0.12 -3.42 7.45 22.27 0.17 -3.26 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.68 7.27 -2.39 -0.02 1.66 16 31 H 0.04 1.60 5.90 -2.39 -0.01 1.58 16 32 H 0.04 1.67 6.74 -2.39 -0.02 1.65 16 33 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.03 1.44 7.61 -2.39 -0.02 1.43 16 37 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.04 1.61 4.77 -2.39 -0.01 1.60 16 39 H 0.07 2.42 7.91 -2.39 -0.02 2.40 16 40 H 0.08 3.98 8.06 -2.91 -0.02 3.95 16 41 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -65.64 348.59 5.49 -60.15 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.82 Total: 19.12 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.97 Total: -25.34 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -0.58 Total: -83.32 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.54 Total: -16.56 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.82 Total: 45.96 kcal Total: -65.64 5.49 -60.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172430574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.964 kcal (2) G-P(sol) polarization free energy of solvation -65.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds