Wall clock time and date at job start Mon Mar 30 2020 02:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38343 * 120.45132 * 2 1 4 4 C 1.38845 * 118.50266 * 179.76745 * 3 2 1 5 5 C 1.38060 * 119.32913 * 0.49577 * 4 3 2 6 6 C 1.50701 * 119.57451 * 179.77319 * 5 4 3 7 7 N 1.46895 * 109.47323 * 94.72338 * 6 5 4 8 8 N 1.31940 * 120.85398 * 359.49215 * 5 4 3 9 9 C 1.32424 * 121.62659 * 0.25429 * 8 5 4 10 10 N 1.39003 * 119.70840 * 179.97438 * 9 8 5 11 11 C 1.46896 * 110.99997 * 306.55420 * 10 9 8 12 12 C 1.46901 * 110.99933 * 70.50506 * 10 9 8 13 13 H 1.08995 * 109.47224 * 189.19529 * 12 10 9 14 14 C 1.53000 * 109.47279 * 309.19782 * 12 10 9 15 15 C 1.53001 * 109.46741 * 69.19839 * 12 10 9 16 16 C 1.53005 * 109.47456 * 65.80237 * 15 12 10 17 17 C 1.50696 * 109.47290 * 185.37285 * 16 15 12 18 18 H 1.08000 * 120.00100 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99846 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00357 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47271 * 89.99671 * 21 19 17 23 23 H 1.48501 * 109.46999 * 210.00260 * 21 19 17 24 24 H 1.48505 * 109.46911 * 329.99590 * 21 19 17 25 25 H 1.08993 * 109.47509 * 275.40412 * 1 2 3 26 26 H 1.08998 * 109.46774 * 35.40389 * 1 2 3 27 27 H 1.08997 * 109.46779 * 155.39812 * 1 2 3 28 28 H 1.07997 * 120.74937 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.33033 * 180.26488 * 4 3 2 30 30 H 1.09005 * 109.46884 * 334.71853 * 6 5 4 31 31 H 1.09006 * 109.47198 * 214.72709 * 6 5 4 32 32 H 1.00896 * 111.00542 * 56.04915 * 7 6 5 33 33 H 1.00905 * 110.99904 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.47639 * 62.63221 * 11 10 9 35 35 H 1.09004 * 109.46959 * 182.63421 * 11 10 9 36 36 H 1.08998 * 109.47202 * 302.62952 * 11 10 9 37 37 H 1.09000 * 109.46504 * 67.41584 * 14 12 10 38 38 H 1.09003 * 109.46791 * 187.41374 * 14 12 10 39 39 H 1.08993 * 109.47095 * 307.41684 * 14 12 10 40 40 H 1.09004 * 109.47036 * 185.79941 * 15 12 10 41 41 H 1.08998 * 109.47562 * 305.79711 * 15 12 10 42 42 H 1.09002 * 109.46419 * 305.37276 * 16 15 12 43 43 H 1.08997 * 109.47092 * 65.37116 * 16 15 12 44 44 H 0.97000 * 120.00152 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1926 0.0000 4 6 3.5958 1.1454 0.0050 5 6 4.2307 -0.0805 -0.0007 6 6 5.7366 -0.1382 -0.0006 7 7 6.2212 -0.2774 1.3791 8 7 3.5362 -1.2023 -0.0007 9 6 2.2119 -1.1991 -0.0003 10 7 1.5202 -2.4048 -0.0008 11 6 1.9663 -3.2672 -1.1032 12 6 1.6556 -3.0900 1.2915 13 1 1.2467 -4.0973 1.2133 14 6 3.1347 -3.1683 1.6748 15 6 0.8913 -2.3112 2.3641 16 6 -0.6069 -2.3562 2.0568 17 6 -1.3469 -1.4816 3.0357 18 1 -0.8031 -0.9468 3.8003 19 6 -2.7182 -1.3633 2.9546 20 7 -3.3803 -2.0133 2.0226 21 14 -3.6355 -0.2785 4.1676 22 1 -3.7332 1.0997 3.6236 23 1 -4.9999 -0.8229 4.3849 24 1 -2.9025 -0.2503 5.4589 25 1 -0.3634 0.0968 1.0230 26 1 -0.3633 0.8376 -0.5954 27 1 -0.3633 -0.9344 -0.4278 28 1 1.6879 2.1390 0.0004 29 1 4.1725 2.0585 0.0094 30 1 6.1354 0.7786 -0.4350 31 1 6.0676 -0.9933 -0.5900 32 1 5.8146 -1.0858 1.8254 33 1 7.2291 -0.3180 1.4060 34 1 3.0196 -3.5133 -0.9686 35 1 1.3768 -4.1841 -1.1086 36 1 1.8335 -2.7443 -2.0502 37 1 3.5099 -2.1660 1.8815 38 1 3.2473 -3.7890 2.5637 39 1 3.7005 -3.6056 0.8522 40 1 1.0756 -2.7606 3.3399 41 1 1.2298 -1.2752 2.3714 42 1 -0.7808 -1.9949 1.0432 43 1 -0.9649 -3.3820 2.1433 44 1 -4.3451 -1.9303 1.9658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:46 Heat of formation + Delta-G solvation = 40.228909 kcal Electronic energy + Delta-G solvation = -22836.746929 eV Core-core repulsion = 19788.998890 eV Total energy + Delta-G solvation = -3047.748040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66660 -37.62450 -34.94852 -33.68179 -32.58477 -31.78600 -30.54080 -28.90949 -27.31625 -26.02986 -24.79108 -23.69177 -22.64795 -21.40079 -20.63526 -19.52609 -16.58997 -16.41045 -16.05616 -15.80816 -15.37951 -14.95030 -14.75037 -14.39422 -13.83337 -13.52204 -13.08025 -12.88716 -12.68206 -12.64907 -12.32091 -12.16061 -11.94787 -11.89146 -11.65004 -11.45318 -11.26077 -11.13545 -10.98100 -10.84592 -10.44887 -10.17370 -9.60487 -9.38920 -9.25300 -9.11350 -8.88978 -8.84737 -8.28882 -8.20034 -8.01472 -5.89703 -3.90204 1.37199 1.54963 3.35888 3.42858 3.46326 3.86800 4.07743 4.45737 4.53257 4.72002 4.85510 5.22406 5.29016 5.40495 5.45704 5.47348 5.51947 5.61159 5.65519 5.72103 5.81130 5.87597 5.95835 6.12095 6.14825 6.22402 6.39723 6.41796 6.50934 6.55751 6.62608 6.74881 6.81531 6.90274 6.96768 7.21432 7.26498 7.27926 7.39888 7.77498 7.85762 8.06499 8.21967 8.23900 8.57238 9.18337 9.72257 11.20916 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.005353 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.980415 B = 5229.246938 C = 5579.453832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.156 4.156 5 C 0.110 3.890 6 C 0.120 3.880 7 N -0.844 5.844 8 N -0.498 5.498 9 C 0.300 3.700 10 N -0.471 5.471 11 C 0.031 3.969 12 C 0.084 3.916 13 H 0.082 0.918 14 C -0.169 4.169 15 C -0.102 4.102 16 C 0.020 3.980 17 C -0.514 4.514 18 H 0.049 0.951 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.346 0.654 33 H 0.341 0.659 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.007 0.993 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.900 2.505 -6.640 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.114 4.114 4 C -0.176 4.176 5 C -0.029 4.029 6 C -0.012 4.012 7 N -0.375 5.375 8 N -0.211 5.211 9 C 0.071 3.929 10 N -0.193 5.193 11 C -0.117 4.117 12 C -0.022 4.022 13 H 0.100 0.900 14 C -0.228 4.228 15 C -0.140 4.140 16 C -0.017 4.017 17 C -0.553 4.553 18 H 0.067 0.933 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.710 3.290 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.201 1.201 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.025 0.975 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.309 2.458 -6.666 16.877 hybrid contribution 0.199 0.327 0.545 0.666 sum 15.508 2.784 -6.121 16.903 Atomic orbital electron populations 1.20949 0.88375 1.02920 1.04643 1.20812 0.98727 0.91703 0.97356 1.21450 0.93736 0.98270 0.97906 1.21751 0.94922 0.98521 1.02440 1.20685 0.95302 0.88552 0.98346 1.20504 0.89461 1.01038 0.90161 1.58691 1.12120 1.49659 1.17007 1.67685 1.09170 1.31204 1.13009 1.19586 0.86042 0.91721 0.95523 1.60290 1.51790 1.02505 1.04741 1.22320 0.99055 0.96955 0.93351 1.21935 0.94291 0.97971 0.88015 0.89967 1.22496 0.97590 1.02078 1.00592 1.21703 0.99440 0.97924 0.94897 1.19227 0.87511 0.96510 0.98414 1.21274 0.91774 1.27465 1.14739 0.93308 1.24944 0.97744 0.95879 0.95507 1.69964 1.07493 1.42455 1.33300 0.86764 0.79310 0.80953 0.81974 1.20786 1.21388 1.20105 0.88262 0.93190 0.89255 0.84921 0.85487 0.89988 0.94233 0.84073 0.84632 0.94408 0.91063 0.92154 0.92084 0.93321 0.92827 0.93414 0.93636 0.93661 0.97506 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 8.55 36.01 0.31 -1.77 16 2 C -0.08 -1.41 5.38 -104.26 -0.56 -1.98 16 3 C -0.09 -1.29 9.87 -39.32 -0.39 -1.68 16 4 C -0.16 -2.10 9.71 -39.42 -0.38 -2.49 16 5 C 0.11 1.55 6.29 -82.61 -0.52 1.03 16 6 C 0.12 1.30 7.09 -4.98 -0.04 1.27 16 7 N -0.84 -8.85 9.61 -11.41 -0.11 -8.96 16 8 N -0.50 -7.81 6.61 -8.67 -0.06 -7.87 16 9 C 0.30 5.15 4.09 -155.01 -0.63 4.52 16 10 N -0.47 -8.22 2.97 -173.45 -0.51 -8.73 16 11 C 0.03 0.46 9.12 60.06 0.55 1.00 16 12 C 0.08 1.51 2.28 -67.71 -0.15 1.36 16 13 H 0.08 1.47 7.99 -51.93 -0.41 1.05 16 14 C -0.17 -2.67 7.79 37.16 0.29 -2.38 16 15 C -0.10 -2.15 4.59 -26.73 -0.12 -2.28 16 16 C 0.02 0.51 4.24 -27.88 -0.12 0.39 16 17 C -0.51 -14.26 8.55 -34.44 -0.29 -14.55 16 18 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 21 Si 0.88 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.10 2.14 6.80 -51.93 -0.35 1.79 16 26 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.09 1.80 6.03 -51.93 -0.31 1.49 16 28 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.35 3.95 8.99 -39.29 -0.35 3.60 16 33 H 0.34 2.66 9.08 -39.29 -0.36 2.31 16 34 H 0.04 0.54 6.35 -51.93 -0.33 0.21 16 35 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 37 H 0.06 1.03 6.26 -51.93 -0.33 0.71 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.80 6.48 -51.93 -0.34 0.47 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.04 1.00 6.91 -51.93 -0.36 0.65 16 42 H 0.05 1.16 4.67 -51.93 -0.24 0.92 16 43 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -29.94 343.02 -9.10 -39.05 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.14 Total: 6.29 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.16 Total: -15.95 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.05 Total: -51.12 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.94 -9.10 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.275 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds