Wall clock time and date at job start Mon Mar 30 2020 01:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46390 * 2 1 4 4 C 1.52995 * 109.47061 * 240.00412 * 2 1 3 5 5 C 1.53006 * 109.47138 * 174.99630 * 4 2 1 6 6 C 1.50698 * 109.47307 * 179.97438 * 5 4 2 7 7 H 1.08006 * 120.00074 * 0.02562 * 6 5 4 8 8 C 1.37867 * 120.00137 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00294 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00496 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46751 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47333 * 119.99559 * 10 8 6 13 13 H 1.48496 * 109.47173 * 240.00329 * 10 8 6 14 14 N 1.46897 * 109.47351 * 119.99969 * 2 1 3 15 15 C 1.46892 * 111.00141 * 276.43637 * 14 2 1 16 16 H 1.08998 * 109.47466 * 35.49123 * 15 14 2 17 17 C 1.52999 * 109.47369 * 155.49086 * 15 14 2 18 18 C 1.52998 * 109.47227 * 294.80989 * 17 15 14 19 19 O 1.42904 * 109.47359 * 185.01312 * 18 17 15 20 20 C 1.50699 * 109.46972 * 275.49032 * 15 14 2 21 21 C 1.38231 * 120.00435 * 319.86675 * 20 15 14 22 22 C 1.38237 * 120.00478 * 180.02562 * 21 20 15 23 23 C 1.38231 * 119.99778 * 0.06426 * 22 21 20 24 24 C 1.38232 * 120.00110 * 0.02562 * 23 22 21 25 25 C 1.38239 * 119.99825 * 140.00170 * 20 15 14 26 26 H 1.09002 * 109.47324 * 55.42465 * 1 2 3 27 27 H 1.09008 * 109.46715 * 175.42266 * 1 2 3 28 28 H 1.08997 * 109.47146 * 295.42319 * 1 2 3 29 29 H 1.09002 * 109.47371 * 294.99518 * 4 2 1 30 30 H 1.09002 * 109.47661 * 54.99762 * 4 2 1 31 31 H 1.08995 * 109.47187 * 300.00443 * 5 4 2 32 32 H 1.08998 * 109.46448 * 59.99974 * 5 4 2 33 33 H 0.96993 * 120.00544 * 180.02562 * 9 8 6 34 34 H 1.00896 * 111.00195 * 152.47670 * 14 2 1 35 35 H 1.08998 * 109.46861 * 54.81008 * 17 15 14 36 36 H 1.09004 * 109.47104 * 174.80848 * 17 15 14 37 37 H 1.08997 * 109.47124 * 305.01270 * 18 17 15 38 38 H 1.08995 * 109.47131 * 65.01324 * 18 17 15 39 39 H 0.96700 * 114.00306 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.99596 * 0.10709 * 21 20 15 41 41 H 1.07996 * 119.99960 * 180.34429 * 22 21 20 42 42 H 1.08003 * 119.99976 * 179.97438 * 23 22 21 43 43 H 1.08006 * 120.00181 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00519 * 359.97363 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3138 6 6 4.0673 -1.3239 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4185 -1.3610 -2.8151 9 7 6.2691 -0.7764 -2.0001 10 14 6.0413 -2.2415 -4.3404 11 1 4.8913 -2.8130 -5.0863 12 1 6.7646 -1.2775 -5.2078 13 1 6.9629 -3.3347 -3.9393 14 7 2.0197 -0.6925 1.1994 15 6 2.0503 0.2139 2.3550 16 1 1.2068 0.9020 2.2995 17 6 1.9585 -0.6022 3.6459 18 6 0.5960 -1.2946 3.7157 19 8 0.4643 -1.9613 4.9728 20 6 3.3383 0.9962 2.3458 21 6 4.5227 0.3737 1.9987 22 6 5.7043 1.0912 1.9908 23 6 5.7016 2.4309 2.3313 24 6 4.5175 3.0530 2.6802 25 6 3.3358 2.3358 2.6872 26 1 -0.3634 0.5832 -0.8462 27 1 -0.3633 -1.0245 -0.0820 28 1 -0.3633 0.4412 0.9281 29 1 1.7517 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1370 31 1 3.8532 0.4371 -1.3573 32 1 3.9994 -1.0727 -0.4261 33 1 7.2197 -0.8022 -2.1910 34 1 2.9278 -1.1006 1.0358 35 1 2.7486 -1.3530 3.6580 36 1 2.0737 0.0605 4.5036 37 1 -0.1949 -0.5515 3.6140 38 1 0.5165 -2.0225 2.9084 39 1 -0.3775 -2.4234 5.0867 40 1 4.5247 -0.6730 1.7324 41 1 6.6287 0.6062 1.7142 42 1 6.6248 2.9914 2.3255 43 1 4.5154 4.0997 2.9466 44 1 2.4107 2.8218 2.9601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:02 Heat of formation + Delta-G solvation = -48.769275 kcal Electronic energy + Delta-G solvation = -22164.609828 eV Core-core repulsion = 19080.709786 eV Total energy + Delta-G solvation = -3083.900042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.55146 -37.32785 -36.55968 -34.11131 -32.63905 -30.61160 -30.08252 -29.73168 -28.56485 -25.26651 -24.49973 -22.42862 -21.76063 -21.47364 -20.00873 -19.49489 -17.32539 -16.89575 -16.19342 -15.82507 -15.15403 -14.82451 -14.51596 -14.37804 -14.09499 -13.74949 -13.37463 -13.05954 -12.77562 -12.53516 -12.44317 -12.41709 -11.93766 -11.70558 -11.40666 -11.24742 -11.15349 -11.03528 -10.94051 -10.69832 -10.51834 -10.46111 -10.23434 -9.84285 -9.76190 -9.26662 -9.00728 -8.55338 -8.43718 -8.34886 -8.02210 -6.00054 -4.01729 1.66000 1.75870 3.30244 3.38174 3.42216 4.06448 4.32116 4.45924 4.53593 4.97990 5.15231 5.24171 5.31433 5.35677 5.40864 5.48043 5.52303 5.55780 5.62023 5.74234 5.80216 5.86204 5.92816 5.99252 6.15544 6.23753 6.28017 6.32064 6.35114 6.37628 6.48601 6.54329 6.76279 6.86495 6.91772 6.93124 7.09857 7.33581 7.50420 7.63861 7.66833 7.81610 7.87255 7.99742 8.43282 9.04728 9.62245 11.10556 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.005603 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.229592 B = 4996.443888 C = 6128.954672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.024 3.976 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.888 3.112 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.679 5.679 15 C 0.130 3.870 16 H 0.081 0.919 17 C -0.099 4.099 18 C 0.083 3.917 19 O -0.582 6.582 20 C -0.112 4.112 21 C -0.096 4.096 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.119 4.119 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.258 0.742 34 H 0.354 0.646 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.375 0.625 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 4.129 11.635 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.153 4.153 5 C -0.013 4.013 6 C -0.557 4.557 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.531 5.531 10 Si 0.716 3.284 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.314 5.314 15 C 0.019 3.981 16 H 0.099 0.901 17 C -0.137 4.137 18 C 0.006 3.994 19 O -0.387 6.387 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.138 4.138 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.178 0.822 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.221 0.779 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.402 4.123 11.873 15.119 hybrid contribution 0.792 0.005 -1.333 1.550 sum -7.610 4.128 10.540 13.640 Atomic orbital electron populations 1.21812 0.95866 1.01589 1.00138 1.21589 0.94225 0.96397 0.90529 0.94272 1.21828 0.99876 0.99294 0.94287 1.19107 0.88590 0.96817 0.96775 1.21272 0.91924 1.34129 1.08370 0.92773 1.24988 0.97099 0.95597 0.96566 1.69967 1.02189 1.44073 1.36871 0.86599 0.78858 0.79504 0.83420 1.19802 1.21128 1.21061 1.60877 1.34101 1.32513 1.03869 1.20491 0.93608 0.92576 0.91423 0.90064 1.21431 0.96967 0.99142 0.96193 1.22129 0.96842 0.95538 0.84912 1.86449 1.42180 1.71967 1.38120 1.20587 0.96093 0.94660 0.99997 1.20980 0.92019 1.00383 0.98029 1.21167 0.98620 0.94275 0.97688 1.21110 0.97872 0.95121 1.00164 1.21027 0.92905 0.99357 1.01081 1.20915 0.97834 0.93867 1.01167 0.93102 0.92459 0.93800 0.92560 0.92850 0.96993 0.96662 0.93216 0.82191 0.91102 0.91476 0.94478 0.92002 0.77908 0.85888 0.85796 0.86574 0.86694 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.41 37.16 0.35 -1.56 16 2 C 0.08 1.39 2.47 -67.72 -0.17 1.22 16 3 H 0.04 0.72 7.63 -51.93 -0.40 0.33 16 4 C -0.11 -2.34 4.75 -26.73 -0.13 -2.46 16 5 C 0.02 0.60 4.80 -27.88 -0.13 0.47 16 6 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 7 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.68 -10.84 5.59 -100.96 -0.56 -11.41 16 15 C 0.13 1.83 2.03 -68.87 -0.14 1.69 16 16 H 0.08 1.09 6.85 -51.93 -0.36 0.73 16 17 C -0.10 -1.32 5.24 -26.73 -0.14 -1.46 16 18 C 0.08 1.01 6.88 37.16 0.26 1.26 16 19 O -0.58 -6.99 13.66 -35.23 -0.48 -7.47 16 20 C -0.11 -1.73 4.58 -104.62 -0.48 -2.21 16 21 C -0.10 -1.65 9.04 -39.58 -0.36 -2.01 16 22 C -0.10 -1.69 10.05 -39.58 -0.40 -2.09 16 23 C -0.12 -1.87 10.05 -39.59 -0.40 -2.27 16 24 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 25 C -0.12 -1.70 9.67 -39.58 -0.38 -2.09 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 28 H 0.04 0.55 7.26 -51.93 -0.38 0.17 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.39 5.90 -51.93 -0.31 0.08 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.35 6.41 4.16 -39.29 -0.16 6.25 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 39 H 0.37 2.73 9.12 45.56 0.42 3.14 16 40 H 0.12 2.23 6.08 -52.49 -0.32 1.91 16 41 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 42 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.11 1.38 8.04 -52.49 -0.42 0.95 16 LS Contribution 355.27 15.07 5.35 5.35 Total: -1.00 -30.36 355.27 -9.43 -39.79 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.53 Total: 9.37 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -2.93 Total: -26.89 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.17 Total: -36.69 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.48 Total: -7.47 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.36 -9.43 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.979 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds