Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46390 * 2 1 4 4 C 1.52995 * 109.47061 * 240.00412 * 2 1 3 5 5 C 1.53006 * 109.47138 * 174.99630 * 4 2 1 6 6 C 1.50698 * 109.47307 * 179.97438 * 5 4 2 7 7 H 1.08006 * 120.00074 * 0.02562 * 6 5 4 8 8 C 1.37867 * 120.00137 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00294 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00496 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46751 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47333 * 119.99559 * 10 8 6 13 13 H 1.48496 * 109.47173 * 240.00329 * 10 8 6 14 14 N 1.46897 * 109.47351 * 119.99969 * 2 1 3 15 15 C 1.46892 * 111.00141 * 276.43637 * 14 2 1 16 16 H 1.08998 * 109.47466 * 35.49123 * 15 14 2 17 17 C 1.52999 * 109.47369 * 155.49086 * 15 14 2 18 18 C 1.52998 * 109.47227 * 294.80989 * 17 15 14 19 19 O 1.42904 * 109.47359 * 185.01312 * 18 17 15 20 20 C 1.50699 * 109.46972 * 275.49032 * 15 14 2 21 21 C 1.38231 * 120.00435 * 319.86675 * 20 15 14 22 22 C 1.38237 * 120.00478 * 180.02562 * 21 20 15 23 23 C 1.38231 * 119.99778 * 0.06426 * 22 21 20 24 24 C 1.38232 * 120.00110 * 0.02562 * 23 22 21 25 25 C 1.38239 * 119.99825 * 140.00170 * 20 15 14 26 26 H 1.09002 * 109.47324 * 55.42465 * 1 2 3 27 27 H 1.09008 * 109.46715 * 175.42266 * 1 2 3 28 28 H 1.08997 * 109.47146 * 295.42319 * 1 2 3 29 29 H 1.09002 * 109.47371 * 294.99518 * 4 2 1 30 30 H 1.09002 * 109.47661 * 54.99762 * 4 2 1 31 31 H 1.08995 * 109.47187 * 300.00443 * 5 4 2 32 32 H 1.08998 * 109.46448 * 59.99974 * 5 4 2 33 33 H 0.96993 * 120.00544 * 180.02562 * 9 8 6 34 34 H 1.00896 * 111.00195 * 152.47670 * 14 2 1 35 35 H 1.08998 * 109.46861 * 54.81008 * 17 15 14 36 36 H 1.09004 * 109.47104 * 174.80848 * 17 15 14 37 37 H 1.08997 * 109.47124 * 305.01270 * 18 17 15 38 38 H 1.08995 * 109.47131 * 65.01324 * 18 17 15 39 39 H 0.96700 * 114.00306 * 180.02562 * 19 18 17 40 40 H 1.08002 * 119.99596 * 0.10709 * 21 20 15 41 41 H 1.07996 * 119.99960 * 180.34429 * 22 21 20 42 42 H 1.08003 * 119.99976 * 179.97438 * 23 22 21 43 43 H 1.08006 * 120.00181 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00519 * 359.97363 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5649 -0.6131 -1.3138 6 6 4.0673 -1.3239 -2.5439 7 1 3.3688 -1.8044 -3.2131 8 6 5.4185 -1.3610 -2.8151 9 7 6.2691 -0.7764 -2.0001 10 14 6.0413 -2.2415 -4.3404 11 1 4.8913 -2.8130 -5.0863 12 1 6.7646 -1.2775 -5.2078 13 1 6.9629 -3.3347 -3.9393 14 7 2.0197 -0.6925 1.1994 15 6 2.0503 0.2139 2.3550 16 1 1.2068 0.9020 2.2995 17 6 1.9585 -0.6022 3.6459 18 6 0.5960 -1.2946 3.7157 19 8 0.4643 -1.9613 4.9728 20 6 3.3383 0.9962 2.3458 21 6 4.5227 0.3737 1.9987 22 6 5.7043 1.0912 1.9908 23 6 5.7016 2.4309 2.3313 24 6 4.5175 3.0530 2.6802 25 6 3.3358 2.3358 2.6872 26 1 -0.3634 0.5832 -0.8462 27 1 -0.3633 -1.0245 -0.0820 28 1 -0.3633 0.4412 0.9281 29 1 1.7517 -1.7714 -1.2057 30 1 1.6054 -0.2616 -2.1370 31 1 3.8532 0.4371 -1.3573 32 1 3.9994 -1.0727 -0.4261 33 1 7.2197 -0.8022 -2.1910 34 1 2.9278 -1.1006 1.0358 35 1 2.7486 -1.3530 3.6580 36 1 2.0737 0.0605 4.5036 37 1 -0.1949 -0.5515 3.6140 38 1 0.5165 -2.0225 2.9084 39 1 -0.3775 -2.4234 5.0867 40 1 4.5247 -0.6730 1.7324 41 1 6.6287 0.6062 1.7142 42 1 6.6248 2.9914 2.3255 43 1 4.5154 4.0997 2.9466 44 1 2.4107 2.8218 2.9601 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -67.891521 kcal Electronic energy + Delta-G solvation = -22165.439031 eV Core-core repulsion = 19080.709786 eV Total energy + Delta-G solvation = -3084.729244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76214 -38.53664 -37.64871 -35.68737 -34.44035 -31.81812 -31.53301 -31.16825 -29.80011 -27.04815 -25.76222 -23.67234 -23.21374 -22.86939 -21.26102 -20.93451 -18.58918 -18.28819 -17.82863 -17.07018 -16.54568 -16.34657 -15.93534 -15.60590 -15.41262 -14.85610 -14.73542 -14.43282 -14.22233 -14.05601 -13.97310 -13.56957 -13.22366 -13.13493 -13.05100 -12.87823 -12.40750 -12.39221 -12.37505 -12.16012 -11.89232 -11.77492 -11.70978 -11.54796 -11.26378 -10.91182 -10.74560 -10.52960 -9.78654 -9.64203 -9.32390 -8.17572 -6.27770 0.45489 0.53436 1.37372 1.38522 1.50725 2.40477 2.88103 3.14430 3.24947 3.38304 3.88375 3.97250 4.13961 4.18071 4.21088 4.26219 4.35524 4.42562 4.51619 4.52537 4.57651 4.65560 4.74308 4.81484 4.90254 4.99670 5.05872 5.09143 5.13460 5.14817 5.22760 5.24812 5.28526 5.47919 5.55809 5.57747 5.61649 5.67912 5.76602 5.87431 6.14220 6.26173 6.28886 6.41411 6.88231 6.99201 7.40621 8.92670 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.005603 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.229592 B = 4996.443888 C = 6128.954672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.089 3.911 3 H 0.024 0.976 4 C -0.105 4.105 5 C 0.037 3.963 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.923 5.923 10 Si 0.956 3.044 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.279 1.279 14 N -0.675 5.675 15 C 0.136 3.864 16 H 0.100 0.900 17 C -0.094 4.094 18 C 0.089 3.911 19 O -0.599 6.599 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.053 0.947 31 H -0.023 1.023 32 H 0.001 0.999 33 H 0.261 0.739 34 H 0.339 0.661 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.395 0.605 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.136 0.864 43 H 0.150 0.850 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 5.054 11.947 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.020 4.020 3 H 0.042 0.958 4 C -0.143 4.143 5 C -0.001 4.001 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.562 5.562 10 Si 0.782 3.218 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.205 1.205 14 N -0.308 5.308 15 C 0.026 3.974 16 H 0.118 0.882 17 C -0.133 4.133 18 C 0.012 3.988 19 O -0.407 6.407 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.072 0.928 31 H -0.004 1.004 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.245 0.755 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.154 0.846 43 H 0.168 0.832 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.362 5.040 12.194 16.777 hybrid contribution 1.420 -0.269 -1.388 2.003 sum -8.942 4.771 10.806 14.816 Atomic orbital electron populations 1.21731 0.92793 1.02247 1.01740 1.21491 0.96437 0.94835 0.89249 0.95791 1.21670 0.96422 0.99778 0.96403 1.18914 0.91879 0.93980 0.95288 1.21702 0.92463 1.34541 1.09405 0.92717 1.25854 0.97382 0.96310 0.99702 1.70100 1.02490 1.45075 1.38584 0.85529 0.78391 0.78347 0.79562 1.18854 1.20604 1.20487 1.60965 1.32990 1.32799 1.04095 1.20545 0.93505 0.92494 0.90898 0.88170 1.21360 0.97411 0.98696 0.95796 1.22016 0.96330 0.95701 0.84759 1.86397 1.44083 1.72358 1.37881 1.20763 0.95787 0.95613 0.99833 1.20918 0.93346 0.99624 0.99821 1.21242 0.98153 0.95741 0.99432 1.21387 0.99596 0.94222 0.99690 1.21453 0.92107 1.00935 0.99528 1.21321 0.99359 0.93181 1.00019 0.92197 0.92167 0.91616 0.92659 0.92797 1.00431 0.98089 0.93065 0.83952 0.93241 0.90925 0.92460 0.92869 0.75516 0.88250 0.87266 0.84571 0.83228 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.41 71.98 0.68 -2.56 16 2 C 0.09 2.98 2.47 44.92 0.11 3.09 16 3 H 0.02 0.87 7.63 -2.39 -0.02 0.86 16 4 C -0.10 -4.32 4.75 30.59 0.15 -4.17 16 5 C 0.04 1.90 4.80 29.85 0.14 2.05 16 6 C -0.54 -31.07 9.11 25.60 0.23 -30.83 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.92 -55.61 13.29 21.44 0.28 -55.32 16 10 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 N -0.68 -21.64 5.59 -473.34 -2.64 -24.28 16 15 C 0.14 3.71 2.03 44.17 0.09 3.80 16 16 H 0.10 2.38 6.85 -2.39 -0.02 2.36 16 17 C -0.09 -2.44 5.24 30.59 0.16 -2.28 16 18 C 0.09 1.98 6.88 71.98 0.50 2.48 16 19 O -0.60 -13.25 13.66 -148.98 -2.04 -15.29 16 20 C -0.12 -3.67 4.58 -19.87 -0.09 -3.76 16 21 C -0.12 -4.37 9.04 22.27 0.20 -4.17 16 22 C -0.13 -4.62 10.05 22.27 0.22 -4.39 16 23 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.12 -3.18 10.05 22.27 0.22 -2.95 16 25 C -0.12 -3.20 9.67 22.27 0.22 -2.99 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.40 7.26 -2.39 -0.02 1.39 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 32 H 0.00 0.05 5.90 -2.39 -0.01 0.04 16 33 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.34 12.93 4.16 -89.70 -0.37 12.56 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.27 7.90 -2.39 -0.02 1.25 16 39 H 0.40 4.87 9.12 -74.06 -0.68 4.19 16 40 H 0.10 4.02 6.08 -2.91 -0.02 4.00 16 41 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 44 H 0.15 2.93 8.04 -2.91 -0.02 2.91 16 Total: -1.00 -67.00 355.27 1.07 -65.93 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.07 Total: 31.81 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 3.51 Total: -49.59 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.36 Total: -79.60 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -2.04 Total: -15.29 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -67.00 1.07 -65.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.967 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds