Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47452 * 2 1 4 4 C 1.52999 * 109.47089 * 120.00689 * 2 1 3 5 5 C 1.52997 * 109.47173 * 185.00025 * 4 2 1 6 6 C 1.50700 * 109.47463 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99765 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00237 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47232 * 89.99941 * 10 8 6 12 12 H 1.48501 * 109.47048 * 210.00094 * 10 8 6 13 13 H 1.48504 * 109.47149 * 330.00051 * 10 8 6 14 14 N 1.46902 * 109.47002 * 240.00051 * 2 1 3 15 15 C 1.46905 * 110.99922 * 83.68029 * 14 2 1 16 16 H 1.08999 * 109.46882 * 326.71869 * 15 14 2 17 17 C 1.52997 * 109.46905 * 86.71449 * 15 14 2 18 18 C 1.53009 * 109.46619 * 185.62315 * 17 15 14 19 19 O 1.42901 * 109.46481 * 174.43120 * 18 17 15 20 20 C 1.50697 * 109.47208 * 206.71853 * 15 14 2 21 21 C 1.38232 * 120.00258 * 319.72600 * 20 15 14 22 22 C 1.38228 * 120.00428 * 179.81126 * 21 20 15 23 23 C 1.38238 * 119.99903 * 0.39692 * 22 21 20 24 24 C 1.38233 * 119.99650 * 359.85686 * 23 22 21 25 25 C 1.38229 * 120.00426 * 359.95672 * 24 23 22 26 26 H 1.08993 * 109.46475 * 299.99682 * 1 2 3 27 27 H 1.08998 * 109.46767 * 59.99689 * 1 2 3 28 28 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46722 * 304.99762 * 4 2 1 30 30 H 1.08999 * 109.47640 * 64.99625 * 4 2 1 31 31 H 1.09007 * 109.47082 * 299.99516 * 5 4 2 32 32 H 1.08999 * 109.47164 * 59.99308 * 5 4 2 33 33 H 0.96994 * 119.99837 * 180.02562 * 9 8 6 34 34 H 1.00896 * 111.00086 * 207.63107 * 14 2 1 35 35 H 1.08998 * 109.47124 * 65.63148 * 17 15 14 36 36 H 1.08993 * 109.47655 * 305.62247 * 17 15 14 37 37 H 1.08995 * 109.47300 * 54.43381 * 18 17 15 38 38 H 1.09001 * 109.47378 * 294.42818 * 18 17 15 39 39 H 0.96699 * 113.99773 * 179.97438 * 19 18 17 40 40 H 1.08009 * 119.99711 * 359.97438 * 21 20 15 41 41 H 1.08005 * 120.00289 * 180.23159 * 22 21 20 42 42 H 1.08001 * 120.00030 * 179.83125 * 23 22 21 43 43 H 1.07999 * 119.99781 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3136 6 6 4.0672 -1.3234 2.5443 7 1 3.3686 -1.8033 3.2138 8 6 5.4185 -1.3604 2.8156 9 7 5.8568 -1.9797 3.8900 10 14 6.6267 -0.5311 1.6573 11 1 6.8325 0.8769 2.0819 12 1 7.9234 -1.2538 1.6942 13 1 6.0846 -0.5570 0.2750 14 7 2.0197 -0.6925 -1.1995 15 6 2.0528 0.2147 -2.3544 16 1 1.2333 0.9293 -2.2787 17 6 3.3850 0.9668 -2.3741 18 6 3.3647 2.0109 -3.4924 19 8 4.5545 2.7998 -3.4289 20 6 1.9077 -0.5834 -3.6244 21 6 2.5571 -1.7965 -3.7565 22 6 2.4208 -2.5305 -4.9199 23 6 1.6416 -2.0474 -5.9546 24 6 0.9965 -0.8319 -5.8246 25 6 1.1296 -0.0997 -4.6597 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6054 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0730 0.4258 32 1 3.8532 0.4368 1.3573 33 1 6.8074 -2.0053 4.0810 34 1 2.9270 -1.1022 -1.0354 35 1 4.1976 0.2619 -2.5500 36 1 3.5360 1.4637 -1.4158 37 1 2.4943 2.6558 -3.3716 38 1 3.3132 1.5081 -4.4581 39 1 4.6097 3.4837 -4.1104 40 1 3.1689 -2.1722 -2.9495 41 1 2.9252 -3.4801 -5.0216 42 1 1.5374 -2.6196 -6.8646 43 1 0.3881 -0.4543 -6.6331 44 1 0.6252 0.8499 -4.5579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -45.820794 kcal Electronic energy + Delta-G solvation = -21914.559061 eV Core-core repulsion = 18830.786875 eV Total energy + Delta-G solvation = -3083.772186 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75348 -37.67317 -36.78434 -34.27295 -32.66014 -30.94606 -30.30738 -30.04373 -28.95160 -25.52935 -24.37522 -22.81105 -22.29295 -21.15014 -20.27066 -19.63769 -17.53869 -17.10602 -16.61830 -15.81909 -15.61896 -14.99899 -14.76773 -14.40859 -14.21575 -13.83106 -13.59881 -13.36565 -13.02314 -12.94863 -12.64901 -12.45522 -12.18087 -11.92129 -11.75955 -11.59336 -11.32753 -11.19505 -11.03140 -10.88721 -10.73916 -10.53133 -10.07272 -9.95934 -9.76354 -9.45232 -9.18362 -8.90468 -8.70329 -8.53691 -8.17527 -6.04010 -4.02001 1.36033 1.42306 3.31367 3.39263 3.42043 3.77260 4.03756 4.43485 4.45400 4.74687 4.86066 4.96814 5.00225 5.11078 5.20818 5.25955 5.28795 5.32190 5.39200 5.49739 5.55699 5.62415 5.63549 5.77237 5.92678 6.01737 6.02934 6.10682 6.18237 6.22864 6.36084 6.41656 6.45804 6.53026 6.66793 6.72462 6.84444 7.00593 7.25768 7.27969 7.47868 7.52071 7.67965 7.79914 8.54499 9.01456 9.58642 11.09469 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.004938 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.328911 B = 5669.225627 C = 6006.927853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.040 0.960 4 C -0.106 4.106 5 C -0.014 4.014 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.067 3.933 9 N -0.903 5.903 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 N -0.675 5.675 15 C 0.128 3.872 16 H 0.085 0.915 17 C -0.149 4.149 18 C 0.081 3.919 19 O -0.574 6.574 20 C -0.059 4.059 21 C -0.095 4.095 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.013 0.987 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.351 0.649 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.048 0.952 39 H 0.376 0.624 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.457 5.999 -20.493 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 H 0.058 0.942 4 C -0.143 4.143 5 C -0.052 4.052 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.134 4.134 9 N -0.542 5.542 10 Si 0.706 3.294 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.191 1.191 14 N -0.308 5.308 15 C 0.018 3.982 16 H 0.103 0.897 17 C -0.188 4.188 18 C 0.003 3.997 19 O -0.378 6.378 20 C -0.060 4.060 21 C -0.113 4.113 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.174 0.826 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.222 0.778 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.790 5.272 -20.003 22.886 hybrid contribution 1.412 1.277 -0.776 2.056 sum -8.379 6.549 -20.780 23.343 Atomic orbital electron populations 1.21791 0.95339 1.02008 1.00259 1.21686 0.94875 0.96150 0.90307 0.94219 1.21654 0.98049 1.00146 0.94497 1.19607 0.91930 0.96219 0.97410 1.21119 0.92896 1.34323 1.07306 0.90997 1.25032 0.98412 0.94939 0.95025 1.69919 1.14607 1.43511 1.26198 0.86804 0.80694 0.79735 0.82153 1.20385 1.21399 1.19060 1.60754 1.33706 1.32649 1.03712 1.20427 0.96025 0.92495 0.89286 0.89719 1.22314 0.98830 0.98107 0.99551 1.22163 0.86562 0.92465 0.98522 1.86539 1.42439 1.50904 1.57956 1.19818 0.96386 0.95258 0.94551 1.21017 0.98950 0.94148 0.97229 1.21165 0.99073 0.99837 0.93740 1.21087 0.98246 0.96463 0.98893 1.21029 1.00174 0.95346 0.97637 1.20952 0.99405 0.99934 0.93625 0.92799 0.93793 0.92149 0.92040 0.91780 0.96917 0.97386 0.92762 0.82627 0.90764 0.90378 0.93923 0.93405 0.77814 0.85834 0.86253 0.86552 0.86498 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.38 37.16 0.35 -1.52 16 2 C 0.08 1.26 2.46 -67.71 -0.17 1.09 16 3 H 0.04 0.64 7.22 -51.93 -0.38 0.27 16 4 C -0.11 -2.05 4.75 -26.73 -0.13 -2.18 16 5 C -0.01 -0.33 3.87 -27.88 -0.11 -0.44 16 6 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 7 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 10 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 14 N -0.67 -10.29 5.49 -100.95 -0.55 -10.85 16 15 C 0.13 1.67 2.06 -68.87 -0.14 1.53 16 16 H 0.08 1.04 6.88 -51.93 -0.36 0.68 16 17 C -0.15 -2.07 4.99 -26.73 -0.13 -2.20 16 18 C 0.08 0.94 6.64 37.16 0.25 1.19 16 19 O -0.57 -7.21 13.66 -35.23 -0.48 -7.69 16 20 C -0.06 -0.74 4.26 -104.62 -0.45 -1.18 16 21 C -0.10 -1.23 9.31 -39.59 -0.37 -1.60 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 23 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 24 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 25 C -0.12 -1.30 8.94 -39.58 -0.35 -1.65 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.54 7.35 -51.93 -0.38 0.16 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.01 0.30 5.48 -51.93 -0.28 0.01 16 32 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.35 5.92 5.64 -39.29 -0.22 5.69 16 35 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 36 H 0.08 1.23 7.49 -51.93 -0.39 0.84 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.52 7.13 -51.93 -0.37 0.15 16 39 H 0.38 2.76 9.12 45.56 0.42 3.18 16 40 H 0.12 1.66 7.31 -52.48 -0.38 1.28 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.04 8.04 -52.48 -0.42 0.62 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -32.24 351.81 -9.06 -41.29 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.55 Total: 7.18 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -2.87 Total: -25.34 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.22 Total: -38.18 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.48 Total: -7.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.24 -9.06 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.527 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds