Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47452 * 2 1 4 4 C 1.52999 * 109.47089 * 120.00689 * 2 1 3 5 5 C 1.52997 * 109.47173 * 185.00025 * 4 2 1 6 6 C 1.50700 * 109.47463 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31524 * 119.99765 * 179.97438 * 8 6 5 10 10 Si 1.86793 * 120.00237 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47232 * 89.99941 * 10 8 6 12 12 H 1.48501 * 109.47048 * 210.00094 * 10 8 6 13 13 H 1.48504 * 109.47149 * 330.00051 * 10 8 6 14 14 N 1.46902 * 109.47002 * 240.00051 * 2 1 3 15 15 C 1.46905 * 110.99922 * 83.68029 * 14 2 1 16 16 H 1.08999 * 109.46882 * 326.71869 * 15 14 2 17 17 C 1.52997 * 109.46905 * 86.71449 * 15 14 2 18 18 C 1.53009 * 109.46619 * 185.62315 * 17 15 14 19 19 O 1.42901 * 109.46481 * 174.43120 * 18 17 15 20 20 C 1.50697 * 109.47208 * 206.71853 * 15 14 2 21 21 C 1.38232 * 120.00258 * 319.72600 * 20 15 14 22 22 C 1.38228 * 120.00428 * 179.81126 * 21 20 15 23 23 C 1.38238 * 119.99903 * 0.39692 * 22 21 20 24 24 C 1.38233 * 119.99650 * 359.85686 * 23 22 21 25 25 C 1.38229 * 120.00426 * 359.95672 * 24 23 22 26 26 H 1.08993 * 109.46475 * 299.99682 * 1 2 3 27 27 H 1.08998 * 109.46767 * 59.99689 * 1 2 3 28 28 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46722 * 304.99762 * 4 2 1 30 30 H 1.08999 * 109.47640 * 64.99625 * 4 2 1 31 31 H 1.09007 * 109.47082 * 299.99516 * 5 4 2 32 32 H 1.08999 * 109.47164 * 59.99308 * 5 4 2 33 33 H 0.96994 * 119.99837 * 180.02562 * 9 8 6 34 34 H 1.00896 * 111.00086 * 207.63107 * 14 2 1 35 35 H 1.08998 * 109.47124 * 65.63148 * 17 15 14 36 36 H 1.08993 * 109.47655 * 305.62247 * 17 15 14 37 37 H 1.08995 * 109.47300 * 54.43381 * 18 17 15 38 38 H 1.09001 * 109.47378 * 294.42818 * 18 17 15 39 39 H 0.96699 * 113.99773 * 179.97438 * 19 18 17 40 40 H 1.08009 * 119.99711 * 359.97438 * 21 20 15 41 41 H 1.08005 * 120.00289 * 180.23159 * 22 21 20 42 42 H 1.08001 * 120.00030 * 179.83125 * 23 22 21 43 43 H 1.07999 * 119.99781 * 179.97438 * 24 23 22 44 44 H 1.08003 * 120.00470 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3136 6 6 4.0672 -1.3234 2.5443 7 1 3.3686 -1.8033 3.2138 8 6 5.4185 -1.3604 2.8156 9 7 5.8568 -1.9797 3.8900 10 14 6.6267 -0.5311 1.6573 11 1 6.8325 0.8769 2.0819 12 1 7.9234 -1.2538 1.6942 13 1 6.0846 -0.5570 0.2750 14 7 2.0197 -0.6925 -1.1995 15 6 2.0528 0.2147 -2.3544 16 1 1.2333 0.9293 -2.2787 17 6 3.3850 0.9668 -2.3741 18 6 3.3647 2.0109 -3.4924 19 8 4.5545 2.7998 -3.4289 20 6 1.9077 -0.5834 -3.6244 21 6 2.5571 -1.7965 -3.7565 22 6 2.4208 -2.5305 -4.9199 23 6 1.6416 -2.0474 -5.9546 24 6 0.9965 -0.8319 -5.8246 25 6 1.1296 -0.0997 -4.6597 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6054 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2055 31 1 3.9995 -1.0730 0.4258 32 1 3.8532 0.4368 1.3573 33 1 6.8074 -2.0053 4.0810 34 1 2.9270 -1.1022 -1.0354 35 1 4.1976 0.2619 -2.5500 36 1 3.5360 1.4637 -1.4158 37 1 2.4943 2.6558 -3.3716 38 1 3.3132 1.5081 -4.4581 39 1 4.6097 3.4837 -4.1104 40 1 3.1689 -2.1722 -2.9495 41 1 2.9252 -3.4801 -5.0216 42 1 1.5374 -2.6196 -6.8646 43 1 0.3881 -0.4543 -6.6331 44 1 0.6252 0.8499 -4.5579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -67.558892 kcal Electronic energy + Delta-G solvation = -21915.501696 eV Core-core repulsion = 18830.786875 eV Total energy + Delta-G solvation = -3084.714821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.68100 -38.74444 -37.80172 -35.72117 -34.52065 -32.08102 -31.71977 -30.94490 -30.11525 -27.23358 -25.51173 -23.69553 -23.18637 -22.88023 -21.32176 -21.00126 -19.00815 -18.41181 -17.81390 -16.93757 -16.58202 -16.42644 -16.00212 -15.64650 -15.39816 -15.01120 -14.94549 -14.48596 -14.29628 -14.16158 -13.95133 -13.84088 -13.30427 -13.25715 -13.05383 -12.89767 -12.75823 -12.51393 -12.18499 -12.14558 -11.84440 -11.74405 -11.67825 -11.56915 -11.34510 -11.11775 -10.93617 -10.79423 -9.72771 -9.58185 -9.33587 -8.32820 -6.35951 0.53111 0.59744 1.30540 1.32126 1.43000 2.30838 2.91296 3.02443 3.10368 3.44743 3.73746 3.95652 4.06426 4.13225 4.19456 4.24271 4.31484 4.34715 4.37723 4.43852 4.45772 4.58791 4.71165 4.73455 4.80271 4.87474 4.94614 4.97522 5.03161 5.07101 5.11600 5.20696 5.25566 5.41583 5.49747 5.52655 5.64504 5.65941 5.71330 5.78182 6.17711 6.25090 6.26439 6.36909 6.72342 6.88011 7.28414 8.84228 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.004938 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.328911 B = 5669.225627 C = 6006.927853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.087 3.913 3 H 0.041 0.959 4 C -0.098 4.098 5 C -0.007 4.007 6 C -0.529 4.529 7 H 0.033 0.967 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.946 3.054 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.250 1.250 14 N -0.679 5.679 15 C 0.136 3.864 16 H 0.100 0.900 17 C -0.148 4.148 18 C 0.086 3.914 19 O -0.599 6.599 20 C -0.072 4.072 21 C -0.119 4.119 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.010 0.990 33 H 0.266 0.734 34 H 0.339 0.661 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.397 0.603 40 H 0.105 0.895 41 H 0.128 0.872 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 7.715 -23.741 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.059 0.941 4 C -0.136 4.136 5 C -0.045 4.045 6 C -0.567 4.567 7 H 0.051 0.949 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.769 3.231 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.174 1.174 14 N -0.311 5.311 15 C 0.026 3.974 16 H 0.118 0.882 17 C -0.187 4.187 18 C 0.008 3.992 19 O -0.408 6.408 20 C -0.072 4.072 21 C -0.137 4.137 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.247 0.753 40 H 0.123 0.877 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.163 0.837 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.958 7.006 -23.275 26.662 hybrid contribution 1.728 0.687 0.251 1.876 sum -9.231 7.693 -23.024 25.971 Atomic orbital electron populations 1.21725 0.93176 1.02067 1.01713 1.21574 0.96455 0.95438 0.88777 0.94053 1.21520 0.95365 1.00066 0.96638 1.19511 0.94648 0.95312 0.94997 1.21494 0.92602 1.34168 1.08478 0.94879 1.25941 1.00530 0.95667 0.96702 1.70063 1.15282 1.45368 1.28357 0.85730 0.78091 0.78732 0.80502 1.19521 1.20835 1.17380 1.60812 1.32867 1.33342 1.04115 1.20421 0.95951 0.92326 0.88726 0.88238 1.22263 0.98627 0.98344 0.99455 1.22119 0.87071 0.92229 0.97751 1.86477 1.43024 1.51900 1.59398 1.19783 0.97442 0.95193 0.94797 1.21033 0.99875 0.95210 0.97630 1.21355 0.99662 1.00264 0.93732 1.21422 0.97341 0.96859 0.99220 1.21406 0.99720 0.94894 0.98041 1.21210 0.98741 1.00813 0.93215 0.91897 0.91774 0.92792 0.92418 0.92940 0.96408 0.97200 0.92498 0.84055 0.92925 0.92606 0.91696 0.92447 0.75304 0.87692 0.85420 0.84225 0.83661 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.38 71.98 0.68 -2.59 16 2 C 0.09 2.68 2.46 44.92 0.11 2.79 16 3 H 0.04 1.27 7.22 -2.39 -0.02 1.26 16 4 C -0.10 -3.85 4.75 30.59 0.15 -3.71 16 5 C -0.01 -0.34 3.87 29.85 0.12 -0.23 16 6 C -0.53 -31.24 9.66 25.60 0.25 -30.99 16 7 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 8 C 0.01 0.51 5.47 84.65 0.46 0.97 16 9 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 10 Si 0.95 46.05 27.47 68.60 1.88 47.94 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 14 N -0.68 -20.34 5.49 -473.30 -2.60 -22.94 16 15 C 0.14 3.32 2.06 44.17 0.09 3.42 16 16 H 0.10 2.13 6.88 -2.39 -0.02 2.11 16 17 C -0.15 -3.95 4.99 30.60 0.15 -3.80 16 18 C 0.09 1.79 6.64 71.99 0.48 2.27 16 19 O -0.60 -13.84 13.66 -148.98 -2.03 -15.87 16 20 C -0.07 -1.65 4.26 -19.87 -0.08 -1.74 16 21 C -0.12 -3.02 9.31 22.27 0.21 -2.81 16 22 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 23 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 24 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 25 C -0.12 -2.21 8.94 22.27 0.20 -2.01 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.38 7.35 -2.39 -0.02 1.36 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.02 0.83 5.48 -2.38 -0.01 0.82 16 32 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 33 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 34 H 0.34 11.56 5.64 -89.70 -0.51 11.06 16 35 H 0.05 1.60 8.13 -2.39 -0.02 1.59 16 36 H 0.06 1.72 7.49 -2.39 -0.02 1.70 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.08 7.13 -2.39 -0.02 1.06 16 39 H 0.40 4.85 9.12 -74.06 -0.68 4.17 16 40 H 0.10 2.95 7.31 -2.91 -0.02 2.93 16 41 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 42 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.14 1.85 8.04 -2.91 -0.02 1.83 16 Total: -1.00 -71.21 351.81 0.76 -70.45 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.26 Total: 25.89 kcal Atomic # 6 Polarization: -48.37 SS G_CDS: 3.47 Total: -44.90 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.30 Total: -83.49 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -2.03 Total: -15.87 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.94 kcal Total: -71.21 0.76 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.887 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds