Wall clock time and date at job start Mon Mar 30 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00076 * 2 1 4 4 C 1.38729 * 120.05723 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94582 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05440 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94333 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47142 * 340.00166 * 7 6 5 9 9 C 1.53003 * 109.46749 * 99.99697 * 7 6 5 10 10 N 1.46898 * 109.47172 * 219.99403 * 7 6 5 11 11 C 1.46890 * 110.99945 * 146.94090 * 10 7 6 12 12 H 1.09008 * 109.47304 * 332.20827 * 11 10 7 13 13 C 1.52999 * 109.47408 * 92.21196 * 11 10 7 14 14 C 1.53009 * 109.47052 * 212.21290 * 11 10 7 15 15 C 1.53001 * 109.47138 * 64.99922 * 14 11 10 16 16 C 1.50701 * 109.46901 * 180.02562 * 15 14 11 17 17 H 1.08000 * 119.99778 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99924 * 180.02562 * 16 15 14 19 19 N 1.31504 * 120.00155 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99941 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47082 * 89.99917 * 20 18 16 22 22 H 1.48505 * 109.46978 * 210.00453 * 20 18 16 23 23 H 1.48500 * 109.47003 * 330.00115 * 20 18 16 24 24 C 1.38271 * 120.11167 * 0.26777 * 6 5 4 25 25 C 1.38142 * 120.05298 * 359.45528 * 24 6 5 26 26 H 1.08996 * 109.47260 * 300.00720 * 1 2 3 27 27 H 1.08998 * 109.46549 * 60.00528 * 1 2 3 28 28 H 1.09001 * 109.47155 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.02698 * 359.94976 * 4 3 2 30 30 H 1.07999 * 119.97446 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46822 * 185.66966 * 9 7 6 32 32 H 1.08996 * 109.47352 * 305.66156 * 9 7 6 33 33 H 1.08996 * 109.47796 * 65.66637 * 9 7 6 34 34 H 1.00902 * 110.99850 * 270.89543 * 10 7 6 35 35 H 1.09002 * 109.47231 * 174.32181 * 13 11 10 36 36 H 1.09006 * 109.47008 * 294.32051 * 13 11 10 37 37 H 1.09000 * 109.47239 * 54.31781 * 13 11 10 38 38 H 1.08997 * 109.46750 * 184.99794 * 14 11 10 39 39 H 1.08998 * 109.47038 * 304.99620 * 14 11 10 40 40 H 1.09001 * 109.46716 * 300.00143 * 15 14 11 41 41 H 1.09000 * 109.46675 * 60.00015 * 15 14 11 42 42 H 0.97000 * 120.00264 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.97141 * 179.71187 * 24 6 5 44 44 H 1.08002 * 120.03070 * 180.27412 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 3.9861 5.0186 -0.0005 8 1 5.0113 4.9039 0.3513 9 6 3.9951 5.5863 -1.4213 10 7 3.2627 5.9368 0.8891 11 6 4.1852 6.8798 1.5351 12 1 5.1706 6.4221 1.6224 13 6 4.2868 8.1524 0.6920 14 6 3.6613 7.2319 2.9289 15 6 3.6773 5.9817 3.8107 16 6 3.1607 6.3284 5.1833 17 1 2.8522 7.3395 5.4046 18 6 3.0829 5.3551 6.1567 19 7 2.6316 5.6575 7.3543 20 14 3.6171 3.6065 5.7740 21 1 5.0610 3.4509 6.0844 22 1 2.8282 2.6562 6.5986 23 1 3.3868 3.3223 4.3347 24 6 1.9211 3.6048 0.0051 25 6 1.2915 2.3751 -0.0002 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0209 0.3799 0.0018 30 1 5.1346 2.5751 0.0000 31 1 4.5766 6.5080 -1.4406 32 1 4.4426 4.8602 -2.0999 33 1 2.9725 5.7952 -1.7356 34 1 2.5359 6.4268 0.3894 35 1 4.8905 8.8907 1.2198 36 1 4.7538 7.9181 -0.2647 37 1 3.2886 8.5551 0.5200 38 1 4.2968 7.9980 3.3731 39 1 2.6411 7.6074 2.8494 40 1 3.0418 5.2156 3.3664 41 1 4.6975 5.6063 3.8901 42 1 2.5765 4.9727 8.0391 43 1 1.3342 4.5114 0.0093 44 1 0.2129 2.3201 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:22 Heat of formation + Delta-G solvation = -26.161402 kcal Electronic energy + Delta-G solvation = -21771.926582 eV Core-core repulsion = 18689.006892 eV Total energy + Delta-G solvation = -3082.919691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12539 -38.43852 -36.80799 -33.87967 -32.39783 -30.96864 -30.17598 -28.99950 -28.04540 -27.16897 -25.14129 -23.35198 -22.37967 -21.03592 -20.49999 -19.76726 -18.12476 -16.58726 -16.23844 -15.84865 -15.73207 -15.02764 -14.71591 -14.28940 -14.00080 -13.77597 -13.44740 -13.30610 -13.03580 -12.95791 -12.53710 -12.49648 -12.35098 -12.06410 -12.02306 -11.79212 -11.46463 -11.29987 -11.06493 -10.90442 -10.74370 -10.65362 -10.27435 -9.75782 -9.57356 -9.41984 -8.95949 -8.86164 -8.38729 -8.04086 -7.94006 -5.90581 -3.86143 1.47377 1.56603 3.27170 3.42347 3.49771 3.60700 3.85534 4.41370 4.60437 4.83842 4.88946 4.96585 5.03400 5.06841 5.17309 5.24063 5.34671 5.36322 5.41355 5.45713 5.48321 5.55565 5.56469 5.67801 5.80809 5.87111 5.99719 6.05092 6.15616 6.24113 6.33575 6.36823 6.50050 6.55804 6.76513 6.79042 6.86110 7.16348 7.39222 7.44691 7.58090 7.71373 7.81833 7.99422 8.70164 9.15933 9.74367 11.23296 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.006282 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.634928 B = 4455.998805 C = 6272.919844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.117 3.883 4 C -0.153 4.153 5 C -0.079 4.079 6 C -0.097 4.097 7 C 0.126 3.874 8 H 0.082 0.918 9 C -0.175 4.175 10 N -0.668 5.668 11 C 0.082 3.918 12 H 0.070 0.930 13 C -0.180 4.180 14 C -0.089 4.089 15 C -0.006 4.006 16 C -0.515 4.515 17 H 0.067 0.933 18 C 0.065 3.935 19 N -0.911 5.911 20 Si 0.876 3.124 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.259 1.259 24 C -0.052 4.052 25 C -0.208 4.208 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.337 0.663 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.000 1.000 42 H 0.260 0.740 43 H 0.125 0.875 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.285 -5.627 -21.021 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.172 4.172 5 C -0.097 4.097 6 C -0.098 4.098 7 C 0.015 3.985 8 H 0.100 0.900 9 C -0.234 4.234 10 N -0.298 5.298 11 C -0.027 4.027 12 H 0.088 0.912 13 C -0.239 4.239 14 C -0.127 4.127 15 C -0.043 4.043 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.135 4.135 19 N -0.551 5.551 20 Si 0.703 3.297 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.183 1.183 24 C -0.070 4.070 25 C -0.227 4.227 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.143 0.857 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.252 -6.324 -20.309 21.272 hybrid contribution 0.157 -0.227 -0.622 0.680 sum -0.094 -6.551 -20.931 21.932 Atomic orbital electron populations 1.23018 0.78651 1.03606 1.01421 1.86031 1.21215 1.27292 1.89051 1.19001 0.92370 0.84010 0.97417 1.20309 0.91331 0.98417 1.07150 1.20787 0.99594 0.91117 0.98250 1.19738 0.93724 0.94407 1.01910 1.20466 0.96958 0.90028 0.90999 0.90007 1.22577 1.02106 1.01109 0.97564 1.60564 1.13623 1.21764 1.33823 1.21860 0.95465 0.90076 0.95310 0.91205 1.22609 1.01798 0.99638 0.99821 1.21452 0.99871 0.99557 0.91817 1.19463 0.95934 0.94267 0.94655 1.21266 1.42054 0.97449 0.94525 0.91462 1.25004 0.94908 0.98717 0.94904 1.69926 1.47834 1.33848 1.03449 0.86819 0.78487 0.85082 0.79270 1.20671 1.21773 1.18332 1.20688 0.94098 0.96718 0.95510 1.21215 0.99829 0.92483 1.09181 0.92517 0.92841 0.88524 0.85602 0.85717 0.92240 0.92259 0.92398 0.84395 0.92161 0.93372 0.92661 0.93086 0.92875 0.94973 0.98142 0.93035 0.85718 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.29 10.50 -19.42 -0.20 -4.49 16 3 C 0.12 1.67 6.69 -39.22 -0.26 1.40 16 4 C -0.15 -2.13 9.99 -39.43 -0.39 -2.52 16 5 C -0.08 -1.07 9.66 -39.60 -0.38 -1.45 16 6 C -0.10 -1.35 4.96 -104.60 -0.52 -1.87 16 7 C 0.13 1.61 2.84 -68.86 -0.20 1.41 16 8 H 0.08 1.08 7.06 -51.93 -0.37 0.71 16 9 C -0.17 -1.75 9.03 37.16 0.34 -1.41 16 10 N -0.67 -9.73 4.83 -100.95 -0.49 -10.22 16 11 C 0.08 1.26 2.63 -67.71 -0.18 1.09 16 12 H 0.07 1.10 7.21 -51.92 -0.37 0.73 16 13 C -0.18 -2.20 9.06 37.16 0.34 -1.86 16 14 C -0.09 -1.77 4.83 -26.73 -0.13 -1.90 16 15 C -0.01 -0.14 3.93 -27.88 -0.11 -0.25 16 16 C -0.51 -15.29 9.66 -34.44 -0.33 -15.62 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.06 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.91 -29.23 13.96 55.43 0.77 -28.46 16 20 Si 0.88 23.14 27.47 -169.99 -4.67 18.48 16 21 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 24 C -0.05 -0.72 9.32 -39.60 -0.37 -1.09 16 25 C -0.21 -2.84 9.04 -39.43 -0.36 -3.19 16 26 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 30 H 0.12 1.42 8.03 -52.49 -0.42 1.00 16 31 H 0.06 0.56 6.07 -51.93 -0.32 0.25 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.01 -51.93 -0.42 0.14 16 34 H 0.34 4.34 7.55 -39.29 -0.30 4.04 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.51 6.07 -51.93 -0.32 0.20 16 37 H 0.05 0.65 8.01 -51.93 -0.42 0.23 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 41 H 0.00 0.01 7.57 -51.93 -0.39 -0.39 16 42 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 43 H 0.12 1.60 7.50 -52.49 -0.39 1.21 16 44 H 0.12 1.42 6.30 -52.49 -0.33 1.09 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -33.67 351.01 -8.27 -41.94 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.31 Total: 1.61 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -1.66 Total: -24.15 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.29 Total: -38.67 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.20 Total: -4.49 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.67 Total: 18.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.67 -8.27 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.780 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds