Wall clock time and date at job start Mon Mar 30 2020 01:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00126 * 2 1 4 4 C 1.38752 * 120.05683 * 0.20304 * 3 2 1 5 5 C 1.38120 * 119.94623 * 180.23136 * 4 3 2 6 6 C 1.38289 * 120.05231 * 359.81242 * 5 4 3 7 7 C 1.38243 * 120.11602 * 359.97438 * 6 5 4 8 8 C 1.38170 * 120.04953 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02287 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47138 * 145.00151 * 9 8 7 11 11 C 1.53000 * 109.47134 * 264.99955 * 9 8 7 12 12 N 1.46898 * 109.47262 * 24.99951 * 9 8 7 13 13 C 1.46903 * 111.00218 * 153.49076 * 12 9 8 14 14 H 1.08999 * 109.46529 * 346.35530 * 13 12 9 15 15 C 1.52999 * 109.47075 * 106.35328 * 13 12 9 16 16 C 1.52992 * 109.47125 * 226.35653 * 13 12 9 17 17 C 1.53006 * 109.47232 * 64.99545 * 16 13 12 18 18 C 1.50705 * 109.47019 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99928 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99693 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00182 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99865 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46917 * 60.00021 * 22 20 18 24 24 H 1.48505 * 109.46816 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47149 * 299.99796 * 22 20 18 26 26 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47445 * 300.00285 * 1 2 3 28 28 H 1.09005 * 109.46559 * 60.00386 * 1 2 3 29 29 H 1.08006 * 120.02673 * 0.02809 * 4 3 2 30 30 H 1.08001 * 119.97522 * 179.79249 * 5 4 3 31 31 H 1.07999 * 119.94005 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.97710 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47449 * 182.30037 * 11 9 8 34 34 H 1.09009 * 109.47025 * 302.29935 * 11 9 8 35 35 H 1.08999 * 109.47282 * 62.29098 * 11 9 8 36 36 H 1.00908 * 111.00046 * 277.44235 * 12 9 8 37 37 H 1.09002 * 109.47196 * 64.59068 * 15 13 12 38 38 H 1.09001 * 109.47366 * 304.58624 * 15 13 12 39 39 H 1.09005 * 109.46761 * 184.58669 * 15 13 12 40 40 H 1.09005 * 109.47430 * 184.99468 * 16 13 12 41 41 H 1.09006 * 109.47345 * 304.99581 * 16 13 12 42 42 H 1.08999 * 109.47104 * 299.99893 * 17 16 13 43 43 H 1.08995 * 109.46972 * 60.00258 * 17 16 13 44 44 H 0.97001 * 119.99873 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0043 5 6 1.9209 3.6048 -0.0006 6 6 3.3020 3.6757 -0.0058 7 6 4.0561 2.5171 -0.0055 8 6 3.4311 1.2848 0.0004 9 6 4.2537 0.0221 0.0012 10 1 3.7489 -0.7401 0.5946 11 6 4.4216 -0.4781 -1.4350 12 7 5.5748 0.2987 0.5809 13 6 6.1539 -0.9141 1.1741 14 1 5.3818 -1.6780 1.2655 15 6 7.2805 -1.4323 0.2779 16 6 6.7140 -0.5867 2.5597 17 6 5.5681 -0.1875 3.4917 18 6 6.1198 0.1343 4.8567 19 1 7.1815 0.0619 5.0409 20 6 5.2690 0.5213 5.8703 21 7 3.9761 0.6090 5.6462 22 14 5.9529 0.9210 7.5621 23 1 6.9165 2.0457 7.4534 24 1 4.8406 1.3083 8.4667 25 1 6.6451 -0.2727 8.1109 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.2128 2.3204 0.0080 30 1 1.3341 4.5114 -0.0007 31 1 3.7923 4.6380 -0.0099 32 1 5.1345 2.5751 -0.0100 33 1 4.9818 -1.4132 -1.4309 34 1 3.4400 -0.6445 -1.8789 35 1 4.9625 0.2670 -2.0184 36 1 6.1959 0.6963 -0.1078 37 1 8.0893 -0.7019 0.2520 38 1 6.8994 -1.5884 -0.7313 39 1 7.6555 -2.3757 0.6747 40 1 7.2217 -1.4630 2.9628 41 1 7.4217 0.2385 2.4799 42 1 5.0604 0.6888 3.0887 43 1 4.8605 -1.0127 3.5716 44 1 3.3776 0.8809 6.3594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:31 Heat of formation + Delta-G solvation = -26.442243 kcal Electronic energy + Delta-G solvation = -22113.721556 eV Core-core repulsion = 19030.789687 eV Total energy + Delta-G solvation = -3082.931869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.08732 -37.80094 -36.79950 -33.92866 -32.50289 -30.08415 -29.88856 -28.94248 -27.79403 -27.08272 -24.90678 -23.35996 -21.93724 -21.22919 -20.34639 -19.67707 -17.77444 -16.12569 -15.98551 -15.79626 -15.53300 -14.83447 -14.56069 -14.25643 -14.17975 -13.68275 -13.37131 -13.05456 -12.79011 -12.71774 -12.36938 -12.22676 -12.08281 -11.78087 -11.55005 -11.48603 -11.22335 -11.07162 -10.91961 -10.81163 -10.76605 -10.58880 -10.38223 -9.94995 -9.52276 -9.09493 -8.84067 -8.51501 -8.15004 -7.90852 -7.74700 -5.80537 -3.81468 1.64979 1.74559 3.42817 3.46590 3.47753 3.49367 4.05011 4.54043 4.60062 4.95595 5.07705 5.15997 5.23448 5.30315 5.37027 5.45676 5.50671 5.54322 5.54781 5.58312 5.59918 5.70163 5.74851 5.94526 5.99540 6.12946 6.17791 6.19872 6.33210 6.41158 6.53465 6.60827 6.66995 6.79532 6.88274 7.00947 7.08396 7.43360 7.62111 7.64828 7.92208 7.93425 8.17672 8.33530 8.66284 9.27618 9.80422 11.30251 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.005585 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.926859 B = 5011.883291 C = 6019.341223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.090 4.090 6 C -0.159 4.159 7 C -0.055 4.055 8 C -0.089 4.089 9 C 0.134 3.866 10 H 0.091 0.909 11 C -0.172 4.172 12 N -0.666 5.666 13 C 0.085 3.915 14 H 0.064 0.936 15 C -0.174 4.174 16 C -0.096 4.096 17 C 0.030 3.970 18 C -0.516 4.516 19 H 0.049 0.951 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.885 3.115 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.279 1.279 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.332 0.668 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.003 0.997 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 0.959 -16.863 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.108 4.108 6 C -0.178 4.178 7 C -0.073 4.073 8 C -0.090 4.090 9 C 0.023 3.977 10 H 0.109 0.891 11 C -0.231 4.231 12 N -0.296 5.296 13 C -0.024 4.024 14 H 0.082 0.918 15 C -0.233 4.233 16 C -0.135 4.135 17 C -0.007 4.007 18 C -0.555 4.555 19 H 0.068 0.932 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.714 3.286 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.205 1.205 26 H 0.114 0.886 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.150 0.850 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.637 1.026 -16.166 16.849 hybrid contribution 0.191 -0.037 0.372 0.420 sum -4.445 0.989 -15.793 16.437 Atomic orbital electron populations 1.22994 0.78995 1.03578 1.01041 1.86071 1.20844 1.27039 1.88755 1.18806 0.91750 0.84068 0.97093 1.21081 0.99520 0.92481 1.09927 1.20820 0.94754 0.96614 0.98662 1.21025 0.93840 0.98414 1.04497 1.20806 1.00270 0.90612 0.95629 1.19165 0.89774 0.95935 1.04145 1.20313 0.90082 0.93798 0.93478 0.89085 1.22504 1.02060 1.00842 0.97660 1.60532 1.03035 1.29282 1.36736 1.21786 0.94988 0.90151 0.95509 0.91803 1.22491 0.99925 1.01648 0.99199 1.21638 0.99965 0.99261 0.92598 1.18976 0.92526 0.96962 0.92215 1.21311 0.93267 1.44815 0.96086 0.93232 1.24992 0.94874 0.96031 0.98510 1.69981 1.02318 1.48494 1.32560 0.86775 0.78424 0.78711 0.84721 1.20399 1.21473 1.20466 0.88566 0.92640 0.93149 0.86017 0.86447 0.86326 0.85014 0.92563 0.92224 0.92806 0.84958 0.92530 0.93524 0.92393 0.93907 0.93347 0.94938 0.97818 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.81 9.64 -19.43 -0.19 -4.99 16 3 C 0.13 2.07 6.66 -39.22 -0.26 1.81 16 4 C -0.21 -3.03 9.04 -39.43 -0.36 -3.39 16 5 C -0.09 -1.24 10.04 -39.61 -0.40 -1.64 16 6 C -0.16 -2.29 10.04 -39.56 -0.40 -2.69 16 7 C -0.05 -0.86 9.32 -39.60 -0.37 -1.23 16 8 C -0.09 -1.47 5.07 -104.47 -0.53 -2.00 16 9 C 0.13 2.13 2.47 -68.86 -0.17 1.96 16 10 H 0.09 1.68 6.89 -51.93 -0.36 1.33 16 11 C -0.17 -2.19 9.09 37.16 0.34 -1.85 16 12 N -0.67 -10.98 4.55 -100.96 -0.46 -11.44 16 13 C 0.08 1.46 2.68 -67.72 -0.18 1.28 16 14 H 0.06 1.17 7.14 -51.93 -0.37 0.79 16 15 C -0.17 -2.36 9.06 37.16 0.34 -2.03 16 16 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 18 C -0.52 -15.35 9.11 -34.44 -0.31 -15.67 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -28.15 13.29 55.43 0.74 -27.41 16 22 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 28 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 29 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 1.93 6.94 -52.49 -0.36 1.57 16 33 H 0.06 0.68 6.85 -51.93 -0.36 0.32 16 34 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.33 4.70 7.38 -39.29 -0.29 4.41 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.56 6.77 -51.93 -0.35 0.20 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 43 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -33.17 354.47 -8.65 -41.82 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.39 Total: 3.17 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -1.67 Total: -24.05 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.28 Total: -38.86 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.19 Total: -4.99 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.17 -8.65 -41.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.374 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds