Wall clock time and date at job start Mon Mar 30 2020 01:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 117.00126 * 2 1 4 4 C 1.38752 * 120.05683 * 0.20304 * 3 2 1 5 5 C 1.38120 * 119.94623 * 180.23136 * 4 3 2 6 6 C 1.38289 * 120.05231 * 359.81242 * 5 4 3 7 7 C 1.38243 * 120.11602 * 359.97438 * 6 5 4 8 8 C 1.38170 * 120.04953 * 359.97438 * 7 6 5 9 9 C 1.50706 * 120.02287 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47138 * 145.00151 * 9 8 7 11 11 C 1.53000 * 109.47134 * 264.99955 * 9 8 7 12 12 N 1.46898 * 109.47262 * 24.99951 * 9 8 7 13 13 C 1.46903 * 111.00218 * 153.49076 * 12 9 8 14 14 H 1.08999 * 109.46529 * 346.35530 * 13 12 9 15 15 C 1.52999 * 109.47075 * 106.35328 * 13 12 9 16 16 C 1.52992 * 109.47125 * 226.35653 * 13 12 9 17 17 C 1.53006 * 109.47232 * 64.99545 * 16 13 12 18 18 C 1.50705 * 109.47019 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99928 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99693 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00182 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99865 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46917 * 60.00021 * 22 20 18 24 24 H 1.48505 * 109.46816 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47149 * 299.99796 * 22 20 18 26 26 H 1.08997 * 109.47434 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47445 * 300.00285 * 1 2 3 28 28 H 1.09005 * 109.46559 * 60.00386 * 1 2 3 29 29 H 1.08006 * 120.02673 * 0.02809 * 4 3 2 30 30 H 1.08001 * 119.97522 * 179.79249 * 5 4 3 31 31 H 1.07999 * 119.94005 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.97710 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47449 * 182.30037 * 11 9 8 34 34 H 1.09009 * 109.47025 * 302.29935 * 11 9 8 35 35 H 1.08999 * 109.47282 * 62.29098 * 11 9 8 36 36 H 1.00908 * 111.00046 * 277.44235 * 12 9 8 37 37 H 1.09002 * 109.47196 * 64.59068 * 15 13 12 38 38 H 1.09001 * 109.47366 * 304.58624 * 15 13 12 39 39 H 1.09005 * 109.46761 * 184.58669 * 15 13 12 40 40 H 1.09005 * 109.47430 * 184.99468 * 16 13 12 41 41 H 1.09006 * 109.47345 * 304.99581 * 16 13 12 42 42 H 1.08999 * 109.47104 * 299.99893 * 17 16 13 43 43 H 1.08995 * 109.46972 * 60.00258 * 17 16 13 44 44 H 0.97001 * 119.99873 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0043 5 6 1.9209 3.6048 -0.0006 6 6 3.3020 3.6757 -0.0058 7 6 4.0561 2.5171 -0.0055 8 6 3.4311 1.2848 0.0004 9 6 4.2537 0.0221 0.0012 10 1 3.7489 -0.7401 0.5946 11 6 4.4216 -0.4781 -1.4350 12 7 5.5748 0.2987 0.5809 13 6 6.1539 -0.9141 1.1741 14 1 5.3818 -1.6780 1.2655 15 6 7.2805 -1.4323 0.2779 16 6 6.7140 -0.5867 2.5597 17 6 5.5681 -0.1875 3.4917 18 6 6.1198 0.1343 4.8567 19 1 7.1815 0.0619 5.0409 20 6 5.2690 0.5213 5.8703 21 7 3.9761 0.6090 5.6462 22 14 5.9529 0.9210 7.5621 23 1 6.9165 2.0457 7.4534 24 1 4.8406 1.3083 8.4667 25 1 6.6451 -0.2727 8.1109 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.2128 2.3204 0.0080 30 1 1.3341 4.5114 -0.0007 31 1 3.7923 4.6380 -0.0099 32 1 5.1345 2.5751 -0.0100 33 1 4.9818 -1.4132 -1.4309 34 1 3.4400 -0.6445 -1.8789 35 1 4.9625 0.2670 -2.0184 36 1 6.1959 0.6963 -0.1078 37 1 8.0893 -0.7019 0.2520 38 1 6.8994 -1.5884 -0.7313 39 1 7.6555 -2.3757 0.6747 40 1 7.2217 -1.4630 2.9628 41 1 7.4217 0.2385 2.4799 42 1 5.0604 0.6888 3.0887 43 1 4.8605 -1.0127 3.5716 44 1 3.3776 0.8809 6.3594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:30 Heat of formation + Delta-G solvation = -46.332944 kcal Electronic energy + Delta-G solvation = -22114.584081 eV Core-core repulsion = 19030.789687 eV Total energy + Delta-G solvation = -3083.794394 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20910 -39.06742 -37.99340 -35.67480 -34.35585 -31.75126 -31.01395 -30.33409 -28.95167 -28.04129 -26.92726 -24.50158 -23.34335 -22.85089 -21.57192 -21.26599 -18.89030 -18.34108 -17.23618 -16.98577 -16.58321 -16.48689 -16.17008 -15.62371 -15.29738 -14.95046 -14.61673 -14.34474 -14.22896 -14.06176 -13.94526 -13.69678 -13.27568 -13.04754 -12.96835 -12.81250 -12.71729 -12.58417 -12.47145 -12.30165 -11.99991 -11.94800 -11.91505 -11.51686 -11.35920 -11.13460 -10.93129 -10.47274 -9.66508 -9.16430 -8.95437 -8.12004 -6.23120 0.50631 0.59540 1.38410 1.42642 1.50063 2.43921 2.46679 2.90165 3.19469 3.27885 3.86154 4.00618 4.10336 4.18497 4.28112 4.33754 4.37414 4.39147 4.40286 4.50672 4.51358 4.63215 4.70626 4.81592 4.84071 4.89119 4.96505 5.02994 5.09311 5.13356 5.17518 5.24056 5.36247 5.48365 5.51182 5.58237 5.60135 5.69395 5.91029 5.98315 6.04771 6.34091 6.36497 6.54159 6.74750 6.96928 7.44781 8.98791 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.005585 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.926859 B = 5011.883291 C = 6019.341223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.107 3.893 4 C -0.218 4.218 5 C -0.093 4.093 6 C -0.168 4.168 7 C -0.071 4.071 8 C -0.116 4.116 9 C 0.140 3.860 10 H 0.054 0.946 11 C -0.158 4.158 12 N -0.680 5.680 13 C 0.092 3.908 14 H 0.046 0.954 15 C -0.162 4.162 16 C -0.086 4.086 17 C 0.042 3.958 18 C -0.542 4.542 19 H 0.056 0.944 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.267 1.267 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.347 0.653 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.000 1.000 43 H -0.032 1.032 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 1.638 -17.434 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.061 3.939 4 C -0.236 4.236 5 C -0.111 4.111 6 C -0.186 4.186 7 C -0.089 4.089 8 C -0.118 4.118 9 C 0.030 3.970 10 H 0.072 0.928 11 C -0.216 4.216 12 N -0.311 5.311 13 C -0.017 4.017 14 H 0.064 0.936 15 C -0.220 4.220 16 C -0.125 4.125 17 C 0.005 3.995 18 C -0.580 4.580 19 H 0.074 0.926 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.191 1.191 26 H 0.133 0.867 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.019 0.981 43 H -0.014 1.014 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.810 1.700 -16.757 17.269 hybrid contribution -0.158 -0.233 0.567 0.633 sum -3.968 1.467 -16.190 16.733 Atomic orbital electron populations 1.23271 0.76974 1.05199 1.01921 1.86037 1.23081 1.27150 1.88828 1.19085 0.92067 0.84965 0.97741 1.21427 1.00765 0.92196 1.09250 1.21233 0.94893 0.97562 0.97439 1.21366 0.94413 0.98913 1.03929 1.20978 1.00706 0.90948 0.96268 1.19412 0.90514 0.96450 1.05394 1.20139 0.89212 0.92925 0.94682 0.92808 1.22355 1.02372 1.01479 0.95443 1.60352 1.03626 1.29316 1.37840 1.21550 0.95820 0.90108 0.94272 0.93566 1.22343 0.98456 1.01927 0.99260 1.21483 0.97740 0.99229 0.94019 1.18773 0.93513 0.94191 0.92987 1.21780 0.93756 1.45057 0.97398 0.92587 1.25979 0.95098 0.95591 1.03275 1.70146 1.03884 1.49196 1.34085 0.85570 0.77926 0.79046 0.78891 1.19180 1.20929 1.19145 0.86726 0.92921 0.90964 0.83765 0.83432 0.84144 0.84709 0.91658 0.92360 0.91240 0.83323 0.91489 0.91328 0.91769 0.93556 0.93197 0.98145 1.01386 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.34 -10.68 9.64 -92.45 -0.89 -11.58 16 3 C 0.11 3.54 6.66 22.50 0.15 3.69 16 4 C -0.22 -6.15 9.04 22.36 0.20 -5.95 16 5 C -0.09 -2.45 10.04 22.25 0.22 -2.23 16 6 C -0.17 -4.71 10.04 22.28 0.22 -4.48 16 7 C -0.07 -2.24 9.32 22.25 0.21 -2.04 16 8 C -0.12 -3.98 5.07 -19.77 -0.10 -4.09 16 9 C 0.14 4.65 2.47 44.17 0.11 4.76 16 10 H 0.05 2.15 6.89 -2.39 -0.02 2.13 16 11 C -0.16 -3.94 9.09 71.98 0.65 -3.28 16 12 N -0.68 -22.79 4.55 -473.32 -2.15 -24.95 16 13 C 0.09 3.20 2.68 44.91 0.12 3.32 16 14 H 0.05 1.76 7.14 -2.39 -0.02 1.74 16 15 C -0.16 -4.06 9.06 71.98 0.65 -3.41 16 16 C -0.09 -3.77 4.83 30.59 0.15 -3.62 16 17 C 0.04 2.42 4.86 29.85 0.15 2.57 16 18 C -0.54 -32.87 9.11 25.60 0.23 -32.64 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 21 N -0.93 -60.33 13.29 21.45 0.28 -60.04 16 22 Si 0.96 46.56 29.54 68.60 2.03 48.58 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.14 7.65 -2.39 -0.02 1.12 16 28 H 0.07 1.21 7.67 -2.38 -0.02 1.20 16 29 H 0.14 3.24 6.30 -2.91 -0.02 3.22 16 30 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.14 4.00 6.94 -2.91 -0.02 3.98 16 33 H 0.06 1.49 6.85 -2.39 -0.02 1.47 16 34 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.35 9.58 7.38 -89.69 -0.66 8.91 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.45 6.77 -2.39 -0.02 1.43 16 39 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.00 0.01 7.75 -2.39 -0.02 -0.01 16 43 H -0.03 -2.03 8.14 -2.39 -0.02 -2.05 16 44 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -74.16 354.47 4.11 -70.05 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.30 Total: 23.46 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 4.54 Total: -45.52 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -1.87 Total: -84.99 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.89 Total: -11.58 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -74.16 4.11 -70.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.717 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds