Wall clock time and date at job start Mon Mar 30 2020 02:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47220 * 2 1 4 4 C 1.35902 * 117.00523 * 180.02562 * 3 2 1 5 5 C 1.38727 * 120.06152 * 179.97438 * 4 3 2 6 6 C 1.38147 * 119.94544 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.05415 * 0.02932 * 6 5 4 8 8 C 1.50699 * 119.94480 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.47505 * 89.99806 * 8 7 6 10 10 C 1.46902 * 111.00561 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46719 * 34.99912 * 10 9 8 12 12 C 1.52997 * 109.47094 * 275.00137 * 10 9 8 13 13 C 1.52992 * 109.47181 * 154.99678 * 10 9 8 14 14 C 1.52998 * 109.47705 * 295.00106 * 13 10 9 15 15 C 1.50697 * 109.47688 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99531 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00173 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47112 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47094 * 119.99910 * 19 17 15 22 22 H 1.48498 * 109.47203 * 240.00137 * 19 17 15 23 23 C 1.38266 * 120.11551 * 0.24543 * 7 6 5 24 24 C 1.38145 * 120.05109 * 359.45574 * 23 7 6 25 25 H 1.09001 * 109.47339 * 59.99645 * 1 2 3 26 26 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46908 * 299.99502 * 1 2 3 28 28 H 1.09003 * 109.46908 * 240.00498 * 2 1 3 29 29 H 1.09001 * 109.47339 * 120.00355 * 2 1 3 30 30 H 1.07997 * 120.02448 * 0.02562 * 5 4 3 31 31 H 1.07996 * 119.97067 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47109 * 329.99821 * 8 7 6 33 33 H 1.09001 * 109.47475 * 209.99859 * 8 7 6 34 34 H 1.00906 * 111.00234 * 56.04535 * 9 8 7 35 35 H 1.09002 * 109.47153 * 299.99508 * 12 10 9 36 36 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47261 * 59.99681 * 12 10 9 38 38 H 1.09001 * 109.47359 * 55.00427 * 13 10 9 39 39 H 1.09002 * 109.46906 * 175.00446 * 13 10 9 40 40 H 1.09001 * 109.46974 * 300.00556 * 14 13 10 41 41 H 1.09000 * 109.46929 * 59.99736 * 14 13 10 42 42 H 0.97004 * 119.99512 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.97830 * 179.70844 * 23 7 6 44 44 H 1.08002 * 120.02630 * 180.25007 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8852 2.8068 -0.0011 6 6 5.2551 2.9851 -0.0022 7 6 6.0962 1.8878 -0.0033 8 6 7.5902 2.0852 -0.0051 9 7 8.0774 2.1492 1.3792 10 6 9.5332 2.3422 1.4168 11 1 9.8370 2.9774 0.5847 12 6 10.2306 0.9851 1.3035 13 6 9.9254 3.0087 2.7368 14 6 9.3290 4.4164 2.7945 15 6 9.7148 5.0727 4.0951 16 1 10.3249 4.5391 4.8089 17 6 9.2891 6.3541 4.3736 18 7 8.5466 7.0039 3.5041 19 14 9.7680 7.1678 5.9855 20 1 10.6019 6.2332 6.7832 21 1 10.5413 8.4042 5.7053 22 1 8.5421 7.5130 6.7492 23 6 5.5690 0.6096 -0.0085 24 6 4.1998 0.4260 -0.0012 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.2285 3.6642 -0.0007 31 1 5.6693 3.9825 -0.0022 32 1 7.8332 3.0152 -0.5192 33 1 8.0664 1.2505 -0.5196 34 1 7.8081 1.3254 1.8959 35 1 9.9267 0.3499 2.1356 36 1 11.3108 1.1284 1.3309 37 1 9.9510 0.5103 0.3630 38 1 9.5438 2.4180 3.5696 39 1 11.0116 3.0713 2.8035 40 1 9.7106 5.0071 1.9618 41 1 8.2428 4.3538 2.7278 42 1 8.2468 7.9054 3.7003 43 1 6.2281 -0.2460 -0.0141 44 1 3.7885 -0.5727 -0.0012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:44 Heat of formation + Delta-G solvation = -54.808775 kcal Electronic energy + Delta-G solvation = -20826.813834 eV Core-core repulsion = 17742.651900 eV Total energy + Delta-G solvation = -3084.161934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11718 -39.18480 -37.97176 -35.32376 -33.72673 -32.57789 -31.84826 -31.17075 -29.51534 -27.00703 -25.67232 -24.83970 -23.21145 -22.84590 -21.94433 -21.27102 -19.22157 -18.35865 -17.09959 -17.02234 -16.69865 -16.45349 -16.43739 -15.54782 -15.43784 -14.65571 -14.48691 -14.41497 -14.39565 -14.19403 -13.99061 -13.72225 -13.38633 -13.16616 -12.98609 -12.88728 -12.85307 -12.64655 -12.54715 -12.30532 -12.16269 -11.74286 -11.65086 -11.56068 -11.50333 -11.19200 -10.93192 -10.47782 -9.93458 -9.18936 -8.95847 -8.12576 -6.22789 0.41486 0.43821 1.39680 1.40458 1.53409 2.27902 2.44251 2.75013 3.19564 3.52429 3.83510 3.93246 4.00089 4.06871 4.11310 4.14519 4.31179 4.36965 4.41424 4.45982 4.49400 4.56440 4.71356 4.78701 4.81366 4.93252 4.94616 5.02117 5.06324 5.12528 5.13726 5.20388 5.31785 5.33177 5.39131 5.49587 5.60977 5.74167 5.84827 5.91369 6.05300 6.30620 6.36519 6.49338 6.67421 6.97555 7.45123 8.98813 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.003423 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.903474 B = 8178.268611 C = 9370.079057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.336 6.336 4 C 0.117 3.883 5 C -0.170 4.170 6 C -0.072 4.072 7 C -0.123 4.123 8 C 0.110 3.890 9 N -0.688 5.688 10 C 0.090 3.910 11 H 0.061 0.939 12 C -0.168 4.168 13 C -0.089 4.089 14 C 0.039 3.961 15 C -0.541 4.541 16 H 0.055 0.945 17 C -0.003 4.003 18 N -0.932 5.932 19 Si 0.961 3.039 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.280 1.280 23 C -0.072 4.072 24 C -0.207 4.207 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.342 0.658 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.050 0.950 40 H -0.024 1.024 41 H 0.003 0.997 42 H 0.260 0.740 43 H 0.147 0.853 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 -18.934 -10.074 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.072 3.928 5 C -0.188 4.188 6 C -0.090 4.090 7 C -0.124 4.124 8 C -0.018 4.018 9 N -0.320 5.320 10 C -0.019 4.019 11 H 0.079 0.921 12 C -0.227 4.227 13 C -0.127 4.127 14 C 0.002 3.998 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.200 4.200 18 N -0.573 5.573 19 Si 0.786 3.214 20 H -0.186 1.186 21 H -0.204 1.204 22 H -0.205 1.205 23 C -0.090 4.090 24 C -0.226 4.226 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.161 0.839 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.068 0.932 40 H -0.006 1.006 41 H 0.021 0.979 42 H 0.069 0.931 43 H 0.165 0.835 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.015 -17.974 -10.036 23.348 hybrid contribution 0.465 0.153 0.522 0.716 sum -10.551 -17.821 -9.514 22.791 Atomic orbital electron populations 1.21813 0.91594 1.04212 1.03055 1.23077 0.96852 0.80747 1.02353 1.86052 1.18828 1.31492 1.88709 1.19100 0.82765 0.94287 0.96693 1.20538 0.95210 0.95626 1.07450 1.20953 0.92390 0.99253 0.96450 1.19808 0.95387 0.93423 1.03764 1.20761 0.90293 1.00927 0.89866 1.60414 1.12527 1.45881 1.13185 1.21526 0.86684 0.96106 0.97602 0.92105 1.22386 1.01512 0.96688 1.02105 1.21466 0.98603 0.96453 0.96172 1.18817 0.95551 0.91740 0.93710 1.21847 1.31614 0.99867 1.04579 0.92700 1.25965 0.95229 0.98280 1.00547 1.70134 1.37381 1.12566 1.37228 0.85468 0.78105 0.78379 0.79491 1.18640 1.20391 1.20536 1.21073 0.94766 0.96586 0.96582 1.21427 0.94023 0.98559 1.08564 0.91856 0.87959 0.92200 0.90766 0.91240 0.85443 0.86492 0.91984 0.92627 0.83890 0.91979 0.91722 0.91587 0.93559 0.93160 1.00551 0.97898 0.93098 0.83486 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.04 0.67 5.46 71.98 0.39 1.06 16 3 O -0.34 -8.07 10.14 -92.45 -0.94 -9.01 16 4 C 0.12 3.04 6.69 22.51 0.15 3.19 16 5 C -0.17 -4.95 9.99 22.37 0.22 -4.72 16 6 C -0.07 -2.21 9.69 22.25 0.22 -2.00 16 7 C -0.12 -3.39 5.39 -19.85 -0.11 -3.50 16 8 C 0.11 3.06 5.61 85.56 0.48 3.54 16 9 N -0.69 -22.48 5.69 -495.60 -2.82 -25.30 16 10 C 0.09 3.00 2.59 44.91 0.12 3.12 16 11 H 0.06 2.14 7.80 -2.39 -0.02 2.13 16 12 C -0.17 -4.08 9.16 71.98 0.66 -3.42 16 13 C -0.09 -3.75 4.83 30.59 0.15 -3.61 16 14 C 0.04 2.16 4.86 29.85 0.15 2.30 16 15 C -0.54 -32.28 9.11 25.60 0.23 -32.05 16 16 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 18 N -0.93 -59.29 13.29 21.45 0.28 -59.00 16 19 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 23 C -0.07 -1.59 9.69 22.25 0.22 -1.38 16 24 C -0.21 -4.48 9.04 22.37 0.20 -4.28 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.90 7.66 -2.39 -0.02 0.88 16 29 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 33 H 0.06 1.25 7.38 -2.39 -0.02 1.23 16 34 H 0.34 10.05 8.47 -89.69 -0.76 9.29 16 35 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.34 7.45 -2.38 -0.02 1.32 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 41 H 0.00 0.16 7.75 -2.39 -0.02 0.14 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.15 2.32 6.30 -2.91 -0.02 2.30 16 Total: -1.00 -71.28 361.64 3.03 -68.26 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.20 Total: 19.32 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.28 Total: -42.44 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.54 Total: -84.30 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.94 Total: -9.01 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.28 3.03 -68.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.448 kcal (2) G-P(sol) polarization free energy of solvation -71.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds