Wall clock time and date at job start Mon Mar 30 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46803 * 2 1 4 4 C 1.53004 * 109.46917 * 239.99925 * 2 1 3 5 5 C 1.52997 * 109.46811 * 174.99792 * 4 2 1 6 6 C 1.50699 * 109.47067 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00199 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00128 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99767 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00052 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46894 * 89.99506 * 10 8 6 12 12 H 1.48496 * 109.47397 * 209.99786 * 10 8 6 13 13 H 1.48505 * 109.47063 * 329.99772 * 10 8 6 14 14 N 1.46894 * 109.47345 * 120.00153 * 2 1 3 15 15 C 1.46899 * 111.00266 * 275.00252 * 14 2 1 16 16 H 1.09008 * 109.46987 * 34.99505 * 15 14 2 17 17 C 1.53001 * 109.46876 * 274.99866 * 15 14 2 18 18 C 1.52997 * 109.47626 * 154.99566 * 15 14 2 19 19 C 1.50696 * 109.47116 * 295.00259 * 18 15 14 20 20 C 1.38285 * 119.97323 * 89.99837 * 19 18 15 21 21 C 1.38247 * 120.11130 * 179.69858 * 20 19 18 22 22 C 1.38161 * 120.05787 * 0.25492 * 21 20 19 23 23 C 1.38715 * 119.94093 * 0.02562 * 22 21 20 24 24 O 1.35904 * 120.05297 * 180.02562 * 23 22 21 25 25 C 1.38123 * 119.97081 * 270.24705 * 19 18 15 26 26 H 1.08995 * 109.47043 * 299.99929 * 1 2 3 27 27 H 1.09001 * 109.47106 * 60.00016 * 1 2 3 28 28 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47331 * 294.99792 * 4 2 1 30 30 H 1.09006 * 109.47059 * 55.00406 * 4 2 1 31 31 H 1.09003 * 109.47361 * 300.00234 * 5 4 2 32 32 H 1.08997 * 109.47232 * 60.00064 * 5 4 2 33 33 H 0.96999 * 119.99759 * 180.02562 * 9 8 6 34 34 H 1.00907 * 110.99706 * 38.95312 * 14 2 1 35 35 H 1.09002 * 109.47059 * 59.99751 * 17 15 14 36 36 H 1.08999 * 109.47011 * 179.97438 * 17 15 14 37 37 H 1.08995 * 109.47027 * 299.99827 * 17 15 14 38 38 H 1.09003 * 109.47175 * 174.99654 * 18 15 14 39 39 H 1.09005 * 109.46959 * 55.00050 * 18 15 14 40 40 H 1.08002 * 119.94679 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.97068 * 180.27347 * 21 20 19 42 42 H 1.07999 * 120.03538 * 179.97438 * 22 21 20 43 43 H 0.96704 * 113.99603 * 90.00753 * 24 23 22 44 44 H 1.08005 * 120.03130 * 0.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0671 -1.3231 -2.5445 7 1 3.3687 -1.8037 -3.2136 8 6 5.4185 -1.3601 -2.8159 9 7 6.2690 -0.7754 -2.0008 10 14 6.0411 -2.2406 -4.3411 11 1 6.0913 -1.2862 -5.4778 12 1 7.4022 -2.7753 -4.0831 13 1 5.1246 -3.3603 -4.6751 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.2576 0.9329 2.2907 17 6 3.4112 0.9808 2.3223 18 6 1.9771 -0.5798 3.6454 19 6 0.6191 -1.2282 3.7263 20 6 0.4248 -2.4924 3.2007 21 6 -0.8182 -3.0925 3.2790 22 6 -1.8710 -2.4280 3.8781 23 6 -1.6800 -1.1574 4.4009 24 8 -2.7139 -0.5018 4.9912 25 6 -0.4316 -0.5571 4.3208 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4260 33 1 7.2196 -0.8010 -2.1919 34 1 1.4496 -1.4980 1.4099 35 1 3.4863 1.5524 1.3973 36 1 3.4576 1.6601 3.1735 37 1 4.2360 0.2705 2.3785 38 1 2.1126 0.0874 4.4967 39 1 2.7487 -1.3495 3.6605 40 1 1.2465 -3.0137 2.7323 41 1 -0.9663 -4.0817 2.8717 42 1 -2.8419 -2.8969 3.9386 43 1 -2.7924 -0.6657 5.9410 44 1 -0.2804 0.4321 4.7273 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:37 Heat of formation + Delta-G solvation = -44.889481 kcal Electronic energy + Delta-G solvation = -21702.590361 eV Core-core repulsion = 18618.858560 eV Total energy + Delta-G solvation = -3083.731801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.07778 -38.06678 -36.68656 -34.35637 -32.71802 -31.26603 -29.94021 -29.56401 -27.81371 -26.47518 -24.97413 -22.77992 -22.02878 -21.29707 -20.14298 -19.66850 -18.19587 -16.54067 -16.14596 -16.03426 -15.53897 -15.29764 -14.73458 -14.37888 -14.17826 -13.85869 -13.29709 -12.96997 -12.83775 -12.51122 -12.31044 -12.19521 -12.12813 -11.89440 -11.57927 -11.46487 -11.34127 -11.14839 -11.04852 -10.82766 -10.67754 -10.46605 -10.40079 -10.07806 -9.56248 -9.15454 -8.97591 -8.84813 -8.71000 -8.19217 -7.78145 -5.84903 -3.85512 1.08202 1.16859 3.39182 3.45172 3.45271 3.48799 3.98516 4.53800 4.57150 4.63824 4.75624 4.96717 5.14708 5.21088 5.29048 5.43677 5.45452 5.49146 5.50653 5.66120 5.72730 5.76171 5.79405 5.92248 6.02370 6.06568 6.20608 6.23926 6.27135 6.35604 6.37943 6.46946 6.52457 6.65893 6.74514 6.77623 6.96519 7.38335 7.42504 7.62927 7.89307 7.93715 8.13628 8.28870 8.62607 9.23650 9.76694 11.26080 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.026297 B = 0.003658 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.524256 B = 7651.964845 C = 7939.689548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.031 3.969 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.668 5.668 15 C 0.091 3.909 16 H 0.038 0.962 17 C -0.139 4.139 18 C -0.087 4.087 19 C -0.062 4.062 20 C -0.126 4.126 21 C -0.099 4.099 22 C -0.153 4.153 23 C 0.102 3.898 24 O -0.501 6.501 25 C -0.144 4.144 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.006 0.994 32 H 0.033 0.967 33 H 0.257 0.743 34 H 0.335 0.665 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.388 0.612 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.639 -0.535 16.442 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.006 4.006 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.301 5.301 15 C -0.019 4.019 16 H 0.056 0.944 17 C -0.197 4.197 18 C -0.125 4.125 19 C -0.062 4.062 20 C -0.144 4.144 21 C -0.117 4.117 22 C -0.172 4.172 23 C 0.058 3.942 24 O -0.311 6.311 25 C -0.162 4.162 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.243 0.757 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.886 -0.212 15.739 20.990 hybrid contribution -0.592 -0.520 -0.219 0.817 sum -14.478 -0.731 15.520 21.237 Atomic orbital electron populations 1.22516 0.98768 1.01380 1.01078 1.21743 0.90727 0.98369 0.91693 0.91077 1.21619 1.00620 0.98259 0.93073 1.18981 0.88256 0.96410 0.96935 1.21372 0.91817 1.33935 1.08458 0.93188 1.24992 0.97144 0.95842 0.96453 1.69979 1.02093 1.44538 1.36838 0.86698 0.78099 0.80005 0.83771 1.20895 1.21367 1.20042 1.60711 1.57633 1.08988 1.02759 1.21448 0.97497 0.93710 0.89260 0.94428 1.21791 0.97069 0.99725 1.01092 1.20914 0.93183 1.00092 0.98319 1.19897 0.95646 0.94223 0.96412 1.21261 0.97905 0.95226 1.00015 1.21067 0.92530 0.99925 0.98166 1.21390 0.99709 0.94365 1.01708 1.18461 0.86707 0.90959 0.98055 1.84838 1.48900 1.70662 1.26686 1.21304 0.91812 1.00594 1.02505 0.93851 0.92436 0.93017 0.93653 0.93698 0.97551 0.94842 0.93320 0.84490 0.92115 0.93468 0.91465 0.90461 0.89535 0.84941 0.85481 0.85735 0.75701 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.15 37.16 0.34 -2.36 16 2 C 0.08 1.49 2.40 -67.71 -0.16 1.32 16 3 H 0.07 1.31 7.11 -51.93 -0.37 0.94 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.21 16 5 C 0.03 0.83 4.86 -27.89 -0.14 0.69 16 6 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 10 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.67 -10.98 5.51 -99.74 -0.55 -11.53 16 15 C 0.09 1.27 2.45 -67.71 -0.17 1.11 16 16 H 0.04 0.53 7.11 -51.92 -0.37 0.16 16 17 C -0.14 -2.05 9.40 37.16 0.35 -1.70 16 18 C -0.09 -1.01 4.98 -27.89 -0.14 -1.15 16 19 C -0.06 -0.70 4.84 -104.65 -0.51 -1.21 16 20 C -0.13 -1.41 8.04 -39.56 -0.32 -1.73 16 21 C -0.10 -1.01 10.04 -39.61 -0.40 -1.40 16 22 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 23 C 0.10 1.10 6.71 -39.21 -0.26 0.84 16 24 O -0.50 -4.77 13.50 -19.44 -0.26 -5.03 16 25 C -0.14 -1.58 9.64 -39.43 -0.38 -1.96 16 26 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.77 8.13 -51.93 -0.42 0.34 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.03 0.95 7.75 -51.93 -0.40 0.54 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.33 5.12 5.23 -39.29 -0.21 4.92 16 35 H 0.06 1.01 7.43 -51.93 -0.39 0.63 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 40 H 0.13 1.46 7.53 -52.49 -0.40 1.06 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.39 1.71 9.06 45.56 0.41 2.13 16 44 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -32.67 357.06 -9.14 -41.81 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.71 Total: 4.51 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -2.71 Total: -25.58 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.19 Total: -38.30 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.26 Total: -5.03 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.67 -9.14 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.083 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds