Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47562 * 2 1 4 4 C 1.53003 * 109.47063 * 120.00389 * 2 1 3 5 5 C 1.53004 * 109.46907 * 184.99816 * 4 2 1 6 6 C 1.50697 * 109.46709 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00505 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99533 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00162 * 0.02562 * 8 6 5 10 10 Si 1.86808 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47025 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47101 * 119.99983 * 10 8 6 13 13 H 1.48497 * 109.46842 * 239.99906 * 10 8 6 14 14 N 1.46899 * 109.46789 * 239.99749 * 2 1 3 15 15 C 1.46906 * 110.99772 * 85.00335 * 14 2 1 16 16 H 1.08996 * 109.46809 * 324.99785 * 15 14 2 17 17 C 1.53002 * 109.47210 * 84.99858 * 15 14 2 18 18 C 1.53001 * 109.46688 * 204.99567 * 15 14 2 19 19 C 1.50696 * 109.47226 * 65.00269 * 18 15 14 20 20 C 1.38290 * 119.97271 * 89.99254 * 19 18 15 21 21 C 1.38251 * 120.11123 * 180.02562 * 20 19 18 22 22 C 1.38163 * 120.05527 * 0.24024 * 21 20 19 23 23 C 1.38717 * 119.94349 * 359.50941 * 22 21 20 24 24 O 1.35896 * 120.05449 * 180.21612 * 23 22 21 25 25 C 1.38121 * 119.97404 * 270.01892 * 19 18 15 26 26 H 1.09003 * 109.46827 * 299.99862 * 1 2 3 27 27 H 1.09001 * 109.46891 * 59.99751 * 1 2 3 28 28 H 1.08996 * 109.47100 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46574 * 304.99456 * 4 2 1 30 30 H 1.08994 * 109.47421 * 64.99609 * 4 2 1 31 31 H 1.08992 * 109.46905 * 299.99592 * 5 4 2 32 32 H 1.09000 * 109.46622 * 59.99940 * 5 4 2 33 33 H 0.97002 * 120.00043 * 180.02562 * 9 8 6 34 34 H 1.00902 * 111.00306 * 208.95160 * 14 2 1 35 35 H 1.08995 * 109.47056 * 179.97438 * 17 15 14 36 36 H 1.08997 * 109.46803 * 300.00342 * 17 15 14 37 37 H 1.09005 * 109.46866 * 59.99827 * 17 15 14 38 38 H 1.08995 * 109.47424 * 304.99697 * 18 15 14 39 39 H 1.09009 * 109.46806 * 184.99869 * 18 15 14 40 40 H 1.07998 * 119.94582 * 0.02562 * 20 19 18 41 41 H 1.08002 * 119.96904 * 179.97438 * 21 20 19 42 42 H 1.07998 * 120.03052 * 179.74049 * 22 21 20 43 43 H 0.96699 * 114.00130 * 270.29520 * 24 23 22 44 44 H 1.07997 * 120.02529 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 4.0671 -1.3234 2.5444 7 1 3.3687 -1.8039 3.2134 8 6 5.4184 -1.3603 2.8156 9 7 6.2689 -0.7757 2.0006 10 14 6.0411 -2.2410 4.3409 11 1 4.8910 -2.8115 5.0872 12 1 6.9627 -3.3340 3.9397 13 1 6.7644 -1.2770 5.2084 14 7 2.0196 -0.6926 -1.1994 15 6 2.0824 0.2226 -2.3469 16 1 1.2576 0.9329 -2.2906 17 6 3.4111 0.9808 -2.3224 18 6 1.9770 -0.5798 -3.6454 19 6 0.6190 -1.2281 -3.7264 20 6 -0.4317 -0.5583 -4.3262 21 6 -1.6788 -1.1502 -4.4016 22 6 -1.8795 -2.4109 -3.8732 23 6 -0.8259 -3.0870 -3.2757 24 8 -1.0198 -4.3289 -2.7592 25 6 0.4247 -2.4907 -3.2011 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6054 -0.2618 2.1369 30 1 1.7516 -1.7715 1.2056 31 1 3.9994 -1.0729 0.4259 32 1 3.8531 0.4369 1.3573 33 1 7.2197 -0.8020 2.1913 34 1 2.9172 -1.1206 -1.0288 35 1 3.4579 1.6595 -3.1740 36 1 3.4862 1.5523 -1.3973 37 1 4.2359 0.2704 -2.3786 38 1 2.7486 -1.3495 -3.6606 39 1 2.1124 0.0874 -4.4967 40 1 -0.2778 0.4288 -4.7364 41 1 -2.4979 -0.6248 -4.8702 42 1 -2.8550 -2.8712 -3.9287 43 1 -1.2929 -4.3309 -1.8316 44 1 1.2455 -3.0134 -2.7327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = -66.213255 kcal Electronic energy + Delta-G solvation = -21808.784945 eV Core-core repulsion = 18724.128475 eV Total energy + Delta-G solvation = -3084.656469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.65833 -39.15663 -37.61784 -35.86526 -34.58202 -32.33488 -31.24885 -30.59856 -29.08881 -27.38078 -26.97504 -23.46451 -23.32062 -22.68825 -21.40828 -21.02302 -18.83636 -18.47817 -17.21464 -17.01843 -16.55780 -16.37282 -16.17375 -15.79441 -15.11468 -14.70876 -14.55097 -14.44240 -14.28663 -14.14989 -13.49014 -13.33160 -13.14778 -13.01185 -12.96908 -12.86042 -12.76608 -12.56085 -12.32735 -12.21810 -12.16745 -11.80083 -11.74188 -11.54117 -11.26635 -11.20673 -10.91214 -10.54640 -9.57851 -9.41140 -9.13625 -8.20336 -6.30239 0.45417 0.58005 1.38162 1.39141 1.51748 2.40229 2.82677 3.12877 3.33311 3.46835 3.87653 4.09574 4.13435 4.15575 4.32976 4.36853 4.43015 4.46791 4.53037 4.58982 4.65401 4.76997 4.80070 4.85575 4.95197 5.02725 5.03490 5.10070 5.10966 5.22057 5.25878 5.27862 5.33468 5.46337 5.55824 5.60255 5.64462 5.73742 5.84304 5.85643 6.08361 6.26572 6.36249 6.54582 6.86562 6.92343 7.38803 8.90916 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020890 B = 0.004045 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.040296 B = 6920.461320 C = 7450.699162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.092 3.908 3 H 0.027 0.973 4 C -0.101 4.101 5 C 0.032 3.968 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.279 1.279 14 N -0.676 5.676 15 C 0.094 3.906 16 H 0.081 0.919 17 C -0.177 4.177 18 C -0.066 4.066 19 C -0.049 4.049 20 C -0.136 4.136 21 C -0.106 4.106 22 C -0.163 4.163 23 C 0.086 3.914 24 O -0.517 6.517 25 C -0.130 4.130 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.000 1.000 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.336 0.664 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.404 0.596 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.259 1.671 -13.212 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.018 4.018 3 H 0.045 0.955 4 C -0.139 4.139 5 C -0.005 4.005 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.308 5.308 15 C -0.016 4.016 16 H 0.099 0.901 17 C -0.236 4.236 18 C -0.104 4.104 19 C -0.049 4.049 20 C -0.154 4.154 21 C -0.124 4.124 22 C -0.181 4.181 23 C 0.042 3.958 24 O -0.329 6.329 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.001 0.999 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.158 0.842 41 H 0.166 0.834 42 H 0.153 0.847 43 H 0.262 0.738 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.553 1.259 -13.947 20.929 hybrid contribution 1.598 0.140 1.766 2.385 sum -13.955 1.399 -12.182 18.577 Atomic orbital electron populations 1.21647 0.93624 1.01640 1.01006 1.21441 0.95865 0.94959 0.89530 0.95513 1.21629 0.96215 0.99657 0.96362 1.18957 0.91998 0.94305 0.95288 1.21723 0.92467 1.34437 1.09338 0.92633 1.25897 0.97375 0.96327 0.99872 1.70084 1.02659 1.45399 1.38872 0.85480 0.78403 0.78331 0.79334 1.18794 1.20419 1.20475 1.60788 1.33385 1.32347 1.04290 1.21549 0.96441 0.92967 0.90680 0.90113 1.22447 0.98260 1.00979 1.01889 1.20644 0.93452 0.99270 0.97056 1.19673 0.96058 0.93220 0.95993 1.21303 0.92629 1.00811 1.00625 1.21248 0.97780 0.94494 0.98901 1.21542 0.98876 0.95850 1.01860 1.18692 0.93156 0.85000 0.98947 1.84735 1.90797 1.24840 1.32568 1.21285 0.97104 0.95764 1.00748 0.92432 0.92579 0.92873 0.92973 0.92922 0.98157 0.99884 0.92903 0.84438 0.90087 0.94497 0.93593 0.91822 0.88656 0.84152 0.83448 0.84700 0.73786 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 9.40 71.98 0.68 -2.66 16 2 C 0.09 3.06 2.46 44.92 0.11 3.17 16 3 H 0.03 0.95 7.11 -2.39 -0.02 0.93 16 4 C -0.10 -4.11 4.74 30.60 0.15 -3.97 16 5 C 0.03 1.63 4.80 29.85 0.14 1.78 16 6 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 7 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 8 C 0.00 0.18 5.46 84.66 0.46 0.64 16 9 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 10 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 N -0.68 -21.20 5.44 -469.46 -2.55 -23.75 16 15 C 0.09 2.42 2.39 44.92 0.11 2.52 16 16 H 0.08 1.98 7.11 -2.39 -0.02 1.97 16 17 C -0.18 -4.83 9.15 71.98 0.66 -4.17 16 18 C -0.07 -1.49 5.03 29.85 0.15 -1.34 16 19 C -0.05 -1.15 4.95 -19.88 -0.10 -1.25 16 20 C -0.14 -2.63 9.70 22.29 0.22 -2.42 16 21 C -0.11 -1.94 10.04 22.26 0.22 -1.71 16 22 C -0.16 -3.41 9.99 22.37 0.22 -3.18 16 23 C 0.09 2.15 6.71 22.51 0.15 2.31 16 24 O -0.52 -12.43 13.50 -92.38 -1.25 -13.68 16 25 C -0.13 -3.48 9.24 22.36 0.21 -3.27 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 1.40 7.43 -2.39 -0.02 1.39 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.00 0.01 6.43 -2.39 -0.02 0.00 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.34 12.40 6.21 -89.69 -0.56 11.84 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.17 7.43 -2.39 -0.02 1.15 16 37 H 0.04 1.38 8.13 -2.38 -0.02 1.36 16 38 H 0.06 1.56 8.08 -2.39 -0.02 1.54 16 39 H 0.10 1.67 8.09 -2.38 -0.02 1.65 16 40 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 43 H 0.40 6.45 9.06 -74.06 -0.67 5.78 16 44 H 0.11 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -65.54 358.45 1.87 -63.68 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -0.25 Total: 27.25 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 3.61 Total: -44.14 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.27 Total: -79.60 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.25 Total: -13.68 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.54 1.87 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.538 kcal (2) G-P(sol) polarization free energy of solvation -65.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds