Wall clock time and date at job start Mon Mar 30 2020 01:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47245 * 2 1 4 4 C 1.53001 * 109.47130 * 240.00009 * 2 1 3 5 5 C 1.52996 * 109.47286 * 174.99518 * 4 2 1 6 6 C 1.50701 * 109.47608 * 179.97438 * 5 4 2 7 7 H 1.08005 * 119.99298 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99981 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99806 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47014 * 60.00369 * 10 8 6 12 12 H 1.48503 * 109.46842 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47073 * 299.99957 * 10 8 6 14 14 N 1.46894 * 109.47341 * 119.99916 * 2 1 3 15 15 C 1.46899 * 111.00220 * 275.00061 * 14 2 1 16 16 H 1.09002 * 109.47043 * 35.00059 * 15 14 2 17 17 C 1.52997 * 109.47254 * 274.99988 * 15 14 2 18 18 C 1.53002 * 109.47394 * 155.00114 * 15 14 2 19 19 C 1.50703 * 109.46970 * 295.00234 * 18 15 14 20 20 C 1.38263 * 119.93978 * 269.72876 * 19 18 15 21 21 C 1.38154 * 120.05107 * 179.72651 * 20 19 18 22 22 C 1.38726 * 119.94614 * 0.56310 * 21 20 19 23 23 O 1.35895 * 120.06051 * 179.68370 * 22 21 20 24 24 C 1.38736 * 119.88564 * 359.70767 * 22 21 20 25 25 C 1.38138 * 119.94443 * 359.97438 * 24 22 21 26 26 H 1.09003 * 109.47483 * 59.99970 * 1 2 3 27 27 H 1.09003 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47260 * 299.99568 * 1 2 3 29 29 H 1.08992 * 109.47205 * 295.00078 * 4 2 1 30 30 H 1.09007 * 109.47148 * 55.00146 * 4 2 1 31 31 H 1.09000 * 109.47640 * 300.00687 * 5 4 2 32 32 H 1.09000 * 109.46873 * 60.00331 * 5 4 2 33 33 H 0.96996 * 120.00008 * 179.97438 * 9 8 6 34 34 H 1.00904 * 111.00031 * 38.95423 * 14 2 1 35 35 H 1.08998 * 109.47533 * 59.99633 * 17 15 14 36 36 H 1.08996 * 109.47853 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.47153 * 300.00004 * 17 15 14 38 38 H 1.09000 * 109.47059 * 54.99932 * 18 15 14 39 39 H 1.08996 * 109.47073 * 175.00024 * 18 15 14 40 40 H 1.07994 * 119.97828 * 359.97438 * 20 19 18 41 41 H 1.08004 * 120.02330 * 180.24581 * 21 20 19 42 42 H 0.96704 * 113.99963 * 270.02742 * 23 22 21 43 43 H 1.08005 * 120.02699 * 179.97438 * 24 22 21 44 44 H 1.08001 * 119.97189 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6132 -1.3138 6 6 4.0672 -1.3241 -2.5439 7 1 3.3687 -1.8046 -3.2130 8 6 5.4185 -1.3612 -2.8152 9 7 6.2690 -0.7757 -2.0007 10 14 6.0411 -2.2419 -4.3404 11 1 5.4495 -1.6154 -5.5499 12 1 7.5211 -2.1371 -4.4029 13 1 5.6477 -3.6726 -4.2811 14 7 2.0197 -0.6924 1.1994 15 6 2.0825 0.2226 2.3468 16 1 1.2576 0.9329 2.2907 17 6 3.4111 0.9809 2.3223 18 6 1.9771 -0.5797 3.6454 19 6 0.6192 -1.2281 3.7264 20 6 -0.4295 -0.5602 4.3313 21 6 -1.6767 -1.1502 4.4018 22 6 -1.8736 -2.4186 3.8756 23 8 -3.0979 -3.0038 3.9494 24 6 -0.8182 -3.0889 3.2741 25 6 0.4253 -2.4920 3.2003 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7516 -1.7714 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8531 0.4370 -1.3574 32 1 3.9994 -1.0727 -0.4261 33 1 7.2197 -0.8021 -2.1913 34 1 1.4496 -1.4979 1.4100 35 1 3.4863 1.5525 1.3973 36 1 3.4576 1.6602 3.1734 37 1 4.2360 0.2706 2.3785 38 1 2.7488 -1.3494 3.6605 39 1 2.1126 0.0875 4.4966 40 1 -0.2746 0.4250 4.7454 41 1 -2.4965 -0.6265 4.8709 42 1 -3.2349 -3.5295 4.7494 43 1 -0.9688 -4.0767 2.8640 44 1 1.2471 -3.0132 2.7318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:48 Heat of formation + Delta-G solvation = -65.522361 kcal Electronic energy + Delta-G solvation = -21673.784053 eV Core-core repulsion = 18589.157543 eV Total energy + Delta-G solvation = -3084.626510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87777 -39.21366 -37.66000 -35.75077 -34.51097 -31.99856 -31.79514 -31.05229 -29.10412 -27.06278 -26.84680 -23.79197 -23.36774 -22.64627 -21.26665 -21.21252 -19.32948 -18.34268 -17.15671 -16.90493 -16.57606 -16.39859 -16.20127 -15.98693 -15.22150 -14.68475 -14.60143 -14.37222 -14.22711 -13.90744 -13.80700 -13.41576 -13.26648 -13.15941 -13.03203 -12.86690 -12.81271 -12.55210 -12.37050 -12.26055 -12.00561 -11.73896 -11.69268 -11.44387 -11.34883 -11.20169 -10.93438 -10.46022 -9.93699 -9.39507 -9.07503 -8.11647 -6.21928 0.27069 0.40254 1.40123 1.43499 1.51129 2.44862 2.67306 3.20146 3.31189 3.35905 3.82405 3.92951 4.01625 4.08192 4.17304 4.30363 4.37070 4.45649 4.49412 4.50460 4.62994 4.74787 4.82541 4.84690 4.94193 5.00304 5.01696 5.05184 5.09466 5.15663 5.23046 5.28949 5.36952 5.45621 5.48145 5.52836 5.61059 5.68671 5.91858 5.93027 6.06087 6.36274 6.38032 6.70316 6.87416 6.97376 7.45676 8.99243 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.003748 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.063535 B = 7468.115943 C = 7941.518488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.092 3.908 3 H 0.060 0.940 4 C -0.088 4.088 5 C 0.044 3.956 6 C -0.545 4.545 7 H 0.053 0.947 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.268 1.268 14 N -0.687 5.687 15 C 0.094 3.906 16 H 0.046 0.954 17 C -0.136 4.136 18 C -0.077 4.077 19 C -0.095 4.095 20 C -0.101 4.101 21 C -0.148 4.148 22 C 0.092 3.908 23 O -0.512 6.512 24 C -0.151 4.151 25 C -0.112 4.112 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.046 0.954 31 H -0.024 1.024 32 H 0.006 0.994 33 H 0.261 0.739 34 H 0.340 0.660 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.409 0.591 43 H 0.134 0.866 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 -0.511 17.007 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.007 3.993 6 C -0.583 4.583 7 H 0.071 0.929 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.193 1.193 14 N -0.321 5.321 15 C -0.016 4.016 16 H 0.064 0.936 17 C -0.194 4.194 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.167 4.167 22 C 0.047 3.953 23 O -0.325 6.325 24 C -0.170 4.170 25 C -0.130 4.130 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.065 0.935 31 H -0.005 1.005 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.267 0.733 43 H 0.151 0.849 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.384 -0.134 16.344 22.446 hybrid contribution -0.154 -0.607 -0.369 0.727 sum -15.538 -0.741 15.975 22.298 Atomic orbital electron populations 1.22355 0.96160 1.01823 1.02098 1.21494 0.92610 0.97079 0.90607 0.92135 1.21455 0.96915 0.98789 0.95475 1.18768 0.91764 0.93771 0.95031 1.21791 0.92512 1.34488 1.09530 0.92900 1.25921 0.97350 0.96495 0.99920 1.70110 1.02512 1.45507 1.38953 0.85595 0.77028 0.79262 0.79686 1.19377 1.20797 1.19344 1.60600 1.58152 1.09922 1.03466 1.21459 0.96884 0.93651 0.89567 0.93575 1.21772 0.97050 0.99561 1.00992 1.20784 0.93389 0.99851 0.97460 1.20033 0.96293 0.94634 0.98600 1.21167 0.91668 1.00404 0.98692 1.21607 0.98182 0.95634 1.01258 1.18604 0.84633 0.92879 0.99152 1.84780 1.30212 1.69269 1.48241 1.21570 0.92494 1.01297 1.01596 1.21137 0.97226 0.95362 0.99246 0.91768 0.92870 0.92374 0.93822 0.93550 1.00545 0.97510 0.93049 0.83861 0.94899 0.90307 0.93746 0.90708 0.88148 0.83788 0.83969 0.73261 0.84859 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 9.15 71.98 0.66 -4.06 16 2 C 0.09 3.24 2.40 44.92 0.11 3.35 16 3 H 0.06 2.26 7.11 -2.39 -0.02 2.24 16 4 C -0.09 -3.84 4.83 30.59 0.15 -3.70 16 5 C 0.04 2.42 4.86 29.85 0.15 2.57 16 6 C -0.55 -32.53 9.11 25.60 0.23 -32.29 16 7 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 10 Si 0.96 45.86 29.54 68.60 2.03 47.88 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 N -0.69 -22.76 5.51 -469.48 -2.59 -25.34 16 15 C 0.09 2.53 2.45 44.92 0.11 2.64 16 16 H 0.05 1.18 7.11 -2.39 -0.02 1.17 16 17 C -0.14 -4.02 9.40 71.98 0.68 -3.34 16 18 C -0.08 -1.65 4.98 29.85 0.15 -1.50 16 19 C -0.10 -1.98 4.84 -19.85 -0.10 -2.07 16 20 C -0.10 -1.81 9.69 22.26 0.22 -1.60 16 21 C -0.15 -2.63 9.99 22.37 0.22 -2.41 16 22 C 0.09 1.79 6.70 22.51 0.15 1.94 16 23 O -0.51 -8.74 13.50 -92.37 -1.25 -9.99 16 24 C -0.15 -3.14 9.99 22.37 0.22 -2.92 16 25 C -0.11 -2.46 8.03 22.25 0.18 -2.28 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.06 1.50 7.43 -2.39 -0.02 1.48 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 31 H -0.02 -1.44 8.14 -2.39 -0.02 -1.46 16 32 H 0.01 0.39 7.75 -2.39 -0.02 0.37 16 33 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 34 H 0.34 10.44 5.23 -89.69 -0.47 9.97 16 35 H 0.03 1.12 7.43 -2.39 -0.02 1.11 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.10 1.67 8.08 -2.39 -0.02 1.65 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.41 2.79 9.06 -74.05 -0.67 2.12 16 43 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.13 2.88 7.52 -2.91 -0.02 2.86 16 Total: -1.00 -70.94 357.05 1.89 -69.04 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.17 Total: 21.83 kcal Atomic # 6 Polarization: -48.76 SS G_CDS: 3.59 Total: -45.18 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.30 Total: -83.59 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.25 Total: -9.99 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.94 1.89 -69.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.519 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds