Wall clock time and date at job start Mon Mar 30 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.52996 * 109.47476 * 239.99851 * 2 1 3 5 5 C 1.53006 * 109.47242 * 175.00168 * 4 2 1 6 6 C 1.50699 * 109.47084 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99997 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99678 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00213 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46847 * 59.99754 * 10 8 6 12 12 H 1.48498 * 109.47130 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47098 * 300.00409 * 10 8 6 14 14 N 1.46908 * 109.46942 * 119.99627 * 2 1 3 15 15 C 1.46894 * 111.00097 * 261.86045 * 14 2 1 16 16 H 1.09004 * 109.47435 * 317.05028 * 15 14 2 17 17 C 1.52995 * 109.47220 * 77.05263 * 15 14 2 18 18 C 1.52999 * 109.47291 * 197.05405 * 15 14 2 19 19 C 1.50703 * 109.47408 * 64.99638 * 18 15 14 20 20 C 1.38260 * 119.94488 * 269.73224 * 19 18 15 21 21 C 1.38149 * 120.05600 * 179.72309 * 20 19 18 22 22 C 1.38735 * 119.94098 * 0.56799 * 21 20 19 23 23 O 1.35895 * 120.05334 * 179.68396 * 22 21 20 24 24 C 1.38732 * 119.88830 * 359.70186 * 22 21 20 25 25 C 1.38148 * 119.94208 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47361 * 304.78296 * 1 2 3 27 27 H 1.09002 * 109.46544 * 64.78041 * 1 2 3 28 28 H 1.08997 * 109.46822 * 184.77392 * 1 2 3 29 29 H 1.09002 * 109.47133 * 295.00088 * 4 2 1 30 30 H 1.08998 * 109.47198 * 55.00189 * 4 2 1 31 31 H 1.09002 * 109.46991 * 300.00007 * 5 4 2 32 32 H 1.08998 * 109.47007 * 59.99904 * 5 4 2 33 33 H 0.97004 * 119.99612 * 180.02562 * 9 8 6 34 34 H 1.00901 * 110.99704 * 25.81583 * 14 2 1 35 35 H 1.09003 * 109.47672 * 51.61980 * 17 15 14 36 36 H 1.08999 * 109.47444 * 171.62088 * 17 15 14 37 37 H 1.09004 * 109.47164 * 291.62160 * 17 15 14 38 38 H 1.09000 * 109.47539 * 185.00142 * 18 15 14 39 39 H 1.09007 * 109.47056 * 304.99881 * 18 15 14 40 40 H 1.08006 * 119.97313 * 359.97438 * 20 19 18 41 41 H 1.07998 * 120.03046 * 180.25359 * 21 20 19 42 42 H 0.96705 * 114.00035 * 270.01842 * 23 22 21 43 43 H 1.08002 * 120.02961 * 179.97438 * 24 22 21 44 44 H 1.08003 * 119.96956 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3232 -2.5443 7 1 3.3688 -1.8037 -3.2134 8 6 5.4186 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0004 10 14 6.0414 -2.2407 -4.3407 11 1 5.4497 -1.6143 -5.5501 12 1 7.5213 -2.1358 -4.4032 13 1 5.6480 -3.6714 -4.2816 14 7 2.0196 -0.6925 1.1996 15 6 2.3781 0.2675 2.2521 16 1 2.9223 1.1031 1.8118 17 6 1.1055 0.7855 2.9249 18 6 3.2606 -0.4235 3.2935 19 6 4.5669 -0.8251 2.6583 20 6 4.6945 -2.0698 2.0701 21 6 5.8891 -2.4381 1.4822 22 6 6.9650 -1.5623 1.4926 23 8 8.1432 -1.9247 0.9206 24 6 6.8361 -0.3160 2.0884 25 6 5.6376 0.0496 2.6700 26 1 -0.3634 0.5862 0.8440 27 1 -0.3632 0.4379 -0.9298 28 1 -0.3633 -1.0241 0.0855 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 3.8533 0.4370 -1.3572 32 1 3.9995 -1.0728 -0.4258 33 1 7.2198 -0.8012 -2.1915 34 1 1.3406 -1.3595 1.5345 35 1 0.4886 -0.0583 3.2342 36 1 1.3725 1.3798 3.7988 37 1 0.5484 1.4041 2.2212 38 1 3.4534 0.2619 4.1188 39 1 2.7516 -1.3110 3.6698 40 1 3.8582 -2.7533 2.0668 41 1 5.9870 -3.4089 1.0192 42 1 8.7533 -2.3697 1.5246 43 1 7.6723 0.3674 2.0982 44 1 5.5369 1.0195 3.1343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:51 Heat of formation + Delta-G solvation = -59.348038 kcal Electronic energy + Delta-G solvation = -22623.387783 eV Core-core repulsion = 19539.029012 eV Total energy + Delta-G solvation = -3084.358771 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52571 -39.12745 -37.54341 -35.69487 -34.34896 -31.88334 -31.65712 -30.60195 -29.09414 -26.90901 -26.60081 -23.52716 -23.12986 -22.56823 -21.60479 -21.01872 -19.16491 -18.21596 -16.90129 -16.83257 -16.46276 -16.14340 -16.05909 -15.53719 -14.96920 -14.68761 -14.52164 -14.21260 -14.13426 -13.92579 -13.70844 -13.42740 -13.13107 -13.07106 -12.83921 -12.80613 -12.67854 -12.48160 -12.36607 -12.18303 -11.84505 -11.71840 -11.44467 -11.39355 -11.15195 -11.04946 -10.81913 -10.34935 -9.60419 -9.07731 -8.90516 -7.97991 -6.07615 0.62824 0.71759 1.37756 1.39653 1.47314 2.47964 2.99063 3.31241 3.42016 3.52330 3.99856 4.12810 4.16971 4.27903 4.30455 4.41942 4.52032 4.53037 4.57112 4.69966 4.74595 4.85211 4.94282 4.99111 5.08362 5.09492 5.09679 5.18947 5.25614 5.30193 5.33823 5.37740 5.46006 5.57422 5.63990 5.68714 5.78277 5.93600 6.01211 6.20592 6.25287 6.45303 6.48008 6.86205 7.08414 7.08840 7.56867 9.07919 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012384 B = 0.008069 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.400536 B = 3469.199718 C = 5333.467847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.047 0.953 4 C -0.089 4.089 5 C 0.049 3.951 6 C -0.551 4.551 7 H 0.043 0.957 8 C 0.013 3.987 9 N -0.894 5.894 10 Si 0.941 3.059 11 H -0.272 1.272 12 H -0.288 1.288 13 H -0.273 1.273 14 N -0.677 5.677 15 C 0.092 3.908 16 H 0.050 0.950 17 C -0.173 4.173 18 C -0.059 4.059 19 C -0.079 4.079 20 C -0.074 4.074 21 C -0.155 4.155 22 C 0.105 3.895 23 O -0.513 6.513 24 C -0.162 4.162 25 C -0.114 4.114 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.035 0.965 31 H -0.040 1.040 32 H 0.022 0.978 33 H 0.253 0.747 34 H 0.343 0.657 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.127 0.873 41 H 0.105 0.895 42 H 0.396 0.604 43 H 0.122 0.878 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 0.751 15.271 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 H 0.065 0.935 4 C -0.127 4.127 5 C 0.012 3.988 6 C -0.589 4.589 7 H 0.061 0.939 8 C -0.187 4.187 9 N -0.532 5.532 10 Si 0.767 3.233 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.198 1.198 14 N -0.308 5.308 15 C -0.018 4.018 16 H 0.069 0.931 17 C -0.232 4.232 18 C -0.096 4.096 19 C -0.079 4.079 20 C -0.092 4.092 21 C -0.174 4.174 22 C 0.061 3.939 23 O -0.324 6.324 24 C -0.180 4.180 25 C -0.132 4.132 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.054 0.946 31 H -0.022 1.022 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.253 0.747 43 H 0.140 0.860 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.595 0.978 14.562 16.016 hybrid contribution 0.383 -0.357 -0.894 1.036 sum -6.213 0.622 13.668 15.026 Atomic orbital electron populations 1.22467 0.95179 1.02481 1.02403 1.21402 0.93325 0.95920 0.90593 0.93456 1.21491 0.97029 0.98798 0.95431 1.18726 0.91709 0.92766 0.95571 1.21621 0.92166 1.35343 1.09764 0.93857 1.25713 0.97463 0.96561 0.98970 1.70097 1.01810 1.43954 1.37361 0.85894 0.76930 0.79477 0.80999 1.19770 1.21364 1.19811 1.60407 1.47809 1.17454 1.05180 1.21560 0.95306 0.93542 0.91355 0.93112 1.22556 0.97507 1.01939 1.01192 1.20616 0.91055 1.01502 0.96434 1.19855 0.95638 0.93362 0.99024 1.20819 0.95370 0.96999 0.96010 1.21352 0.94960 1.00035 1.01041 1.18477 0.86665 0.93669 0.95060 1.84919 1.26941 1.80160 1.40401 1.21376 0.99803 0.96371 1.00456 1.21052 0.92288 0.99724 1.00126 0.91070 0.92652 0.91812 0.93800 0.94647 1.02175 0.95941 0.93763 0.83727 0.91303 0.90989 0.92829 0.88969 0.89755 0.85554 0.87719 0.74733 0.85979 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.95 71.98 0.64 -3.42 16 2 C 0.10 3.20 2.45 44.91 0.11 3.31 16 3 H 0.05 1.71 7.35 -2.39 -0.02 1.69 16 4 C -0.09 -3.84 4.83 30.59 0.15 -3.69 16 5 C 0.05 2.72 4.86 29.85 0.15 2.87 16 6 C -0.55 -33.32 9.11 25.60 0.23 -33.09 16 7 H 0.04 2.56 7.74 -2.91 -0.02 2.54 16 8 C 0.01 0.80 5.46 84.66 0.46 1.26 16 9 N -0.89 -56.62 13.29 21.45 0.28 -56.34 16 10 Si 0.94 47.57 29.54 68.60 2.03 49.59 16 11 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 13 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 14 N -0.68 -19.88 4.92 -469.48 -2.31 -22.19 16 15 C 0.09 2.31 2.48 44.91 0.11 2.42 16 16 H 0.05 1.57 7.58 -2.38 -0.02 1.55 16 17 C -0.17 -3.07 8.54 71.98 0.61 -2.46 16 18 C -0.06 -1.34 5.02 29.85 0.15 -1.19 16 19 C -0.08 -2.48 4.95 -19.85 -0.10 -2.58 16 20 C -0.07 -2.63 8.77 22.25 0.20 -2.44 16 21 C -0.16 -6.32 9.99 22.37 0.22 -6.09 16 22 C 0.11 4.29 6.70 22.51 0.15 4.44 16 23 O -0.51 -20.29 13.50 -92.37 -1.25 -21.54 16 24 C -0.16 -6.02 9.99 22.37 0.22 -5.80 16 25 C -0.11 -3.74 9.69 22.25 0.22 -3.52 16 26 H 0.07 1.43 5.84 -2.39 -0.01 1.42 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.44 8.03 -2.39 -0.02 1.42 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 32 H 0.02 1.30 7.20 -2.39 -0.02 1.29 16 33 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.34 8.47 8.01 -89.69 -0.72 7.76 16 35 H 0.07 1.04 8.03 -2.39 -0.02 1.02 16 36 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 37 H 0.05 1.00 6.27 -2.38 -0.01 0.98 16 38 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 39 H 0.08 1.66 8.08 -2.38 -0.02 1.64 16 40 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 41 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 42 H 0.40 10.35 9.06 -74.05 -0.67 9.68 16 43 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 44 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -74.18 356.84 1.87 -72.31 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.41 Total: 28.13 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 3.53 Total: -49.97 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.02 Total: -78.52 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.25 Total: -21.54 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.59 kcal Total: -74.18 1.87 -72.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.959 kcal (2) G-P(sol) polarization free energy of solvation -74.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds