Wall clock time and date at job start Mon Mar 30 2020 01:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47030 * 239.99452 * 2 1 3 5 5 C 1.50704 * 109.46977 * 174.99915 * 4 2 1 6 6 C 1.38261 * 119.94737 * 269.73354 * 5 4 2 7 7 C 1.38150 * 120.05556 * 179.72606 * 6 5 4 8 8 C 1.38731 * 119.94298 * 0.56142 * 7 6 5 9 9 O 1.35898 * 120.05672 * 179.68406 * 8 7 6 10 10 C 1.38728 * 119.88867 * 359.70803 * 8 7 6 11 11 C 1.38144 * 119.94432 * 0.02562 * 10 8 7 12 12 N 1.46898 * 109.46733 * 119.99599 * 2 1 3 13 13 C 1.46895 * 111.00147 * 281.65813 * 12 2 1 14 14 H 1.09001 * 109.47086 * 344.06129 * 13 12 2 15 15 C 1.53003 * 109.46894 * 104.06034 * 13 12 2 16 16 C 1.53004 * 109.47451 * 224.05900 * 13 12 2 17 17 C 1.53002 * 109.46796 * 64.99847 * 16 13 12 18 18 C 1.50704 * 109.46754 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99685 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00075 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00344 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47000 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47156 * 120.00226 * 22 20 18 25 25 H 1.48496 * 109.47503 * 240.00495 * 22 20 18 26 26 H 1.08997 * 109.47449 * 305.09546 * 1 2 3 27 27 H 1.09009 * 109.47025 * 65.09444 * 1 2 3 28 28 H 1.08999 * 109.47282 * 185.08607 * 1 2 3 29 29 H 1.08988 * 109.47381 * 294.99909 * 4 2 1 30 30 H 1.08999 * 109.47382 * 55.00504 * 4 2 1 31 31 H 1.08004 * 119.96998 * 359.97117 * 6 5 4 32 32 H 1.08003 * 120.02812 * 180.24722 * 7 6 5 33 33 H 0.96701 * 114.00194 * 270.02686 * 9 8 7 34 34 H 1.08003 * 120.02946 * 180.02562 * 10 8 7 35 35 H 1.08007 * 119.97068 * 179.97438 * 11 10 8 36 36 H 1.00904 * 111.00055 * 157.70530 * 12 2 1 37 37 H 1.08999 * 109.47474 * 63.97593 * 15 13 12 38 38 H 1.08996 * 109.46982 * 303.97462 * 15 13 12 39 39 H 1.09002 * 109.47057 * 183.97515 * 15 13 12 40 40 H 1.09001 * 109.47308 * 185.00052 * 16 13 12 41 41 H 1.08999 * 109.46762 * 305.00146 * 16 13 12 42 42 H 1.09001 * 109.47359 * 300.00173 * 17 16 13 43 43 H 1.08999 * 109.47220 * 60.00580 * 17 16 13 44 44 H 0.97002 * 119.99801 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.1313 0.4469 -1.9734 7 6 5.5079 0.5496 -2.0282 8 6 6.2990 -0.4201 -1.4294 9 8 7.6534 -0.3247 -1.4873 10 6 5.7052 -1.4875 -0.7718 11 6 4.3282 -1.5828 -0.7151 12 7 2.0196 -0.6924 1.1995 13 6 1.9337 0.1764 2.3808 14 1 1.7982 1.2101 2.0625 15 6 0.7448 -0.2517 3.2434 16 6 3.2235 0.0586 3.1955 17 6 4.3955 0.6035 2.3765 18 6 5.6659 0.4868 3.1787 19 1 5.6400 0.0658 4.1730 20 6 6.8614 0.9166 2.6429 21 7 6.8929 1.4288 1.4320 22 14 8.4363 0.7714 3.6369 23 1 8.1335 0.1656 4.9584 24 1 9.4037 -0.0883 2.9087 25 1 9.0238 2.1210 3.8335 26 1 -0.3634 0.5908 0.8408 27 1 -0.3633 0.4328 -0.9322 28 1 -0.3634 -1.0236 0.0911 29 1 1.7517 -1.7715 -1.2055 30 1 1.6054 -0.2619 -2.1370 31 1 3.5150 1.1988 -2.4438 32 1 5.9679 1.3814 -2.5410 33 1 8.0459 -0.7606 -2.2561 34 1 6.3189 -2.2435 -0.3045 35 1 3.8654 -2.4139 -0.2036 36 1 2.9619 -1.0272 1.0645 37 1 0.9135 -1.2606 3.6198 38 1 -0.1645 -0.2353 2.6427 39 1 0.6384 0.4360 4.0825 40 1 3.1254 0.6334 4.1164 41 1 3.4055 -0.9883 3.4382 42 1 4.4936 0.0286 1.4556 43 1 4.2135 1.6504 2.1338 44 1 7.7339 1.7315 1.0552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:54 Heat of formation + Delta-G solvation = -41.388271 kcal Electronic energy + Delta-G solvation = -22793.899979 eV Core-core repulsion = 19710.320002 eV Total energy + Delta-G solvation = -3083.579977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.41061 -37.78448 -36.15927 -34.08931 -32.49853 -30.47194 -30.21683 -29.06218 -28.32780 -25.57765 -24.81753 -22.32825 -21.53780 -21.12058 -19.95628 -19.48640 -17.86741 -16.23402 -15.67033 -15.52734 -15.04482 -14.74925 -14.66821 -14.39035 -13.84278 -13.27701 -12.95092 -12.73047 -12.53668 -12.39198 -12.14963 -12.01867 -11.95633 -11.63183 -11.47965 -11.23863 -11.04233 -10.99826 -10.84816 -10.72799 -10.39573 -10.36371 -9.96326 -9.87625 -9.66534 -9.15913 -8.89288 -8.39203 -8.18928 -7.87528 -7.80678 -5.81857 -3.84076 1.82387 1.94300 3.38610 3.46714 3.49935 4.18543 4.58201 4.66932 4.73749 5.11682 5.27048 5.32994 5.52055 5.52553 5.60468 5.66572 5.72197 5.81457 5.88545 5.90396 5.92558 6.06161 6.12861 6.17900 6.24095 6.29297 6.41922 6.46571 6.53369 6.55841 6.61950 6.67247 6.83839 6.98017 7.05721 7.08015 7.20448 7.38274 7.66733 7.77960 7.93598 8.05604 8.14904 8.24994 8.57708 9.19409 9.78235 11.27041 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.008162 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.542073 B = 3429.520085 C = 5150.673708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.042 0.958 4 C -0.076 4.076 5 C -0.101 4.101 6 C -0.103 4.103 7 C -0.131 4.131 8 C 0.135 3.865 9 O -0.488 6.488 10 C -0.125 4.125 11 C -0.099 4.099 12 N -0.685 5.685 13 C 0.082 3.918 14 H 0.044 0.956 15 C -0.135 4.135 16 C -0.124 4.124 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.049 0.951 20 C 0.065 3.935 21 N -0.869 5.869 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.287 1.287 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.374 0.626 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.353 0.647 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.005 0.995 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 -4.718 -8.867 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.150 4.150 8 C 0.091 3.909 9 O -0.296 6.296 10 C -0.144 4.144 11 C -0.118 4.118 12 N -0.321 5.321 13 C -0.028 4.028 14 H 0.063 0.937 15 C -0.193 4.193 16 C -0.162 4.162 17 C -0.013 4.013 18 C -0.566 4.566 19 H 0.068 0.932 20 C -0.138 4.138 21 N -0.507 5.507 22 Si 0.709 3.291 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.214 1.214 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.227 0.773 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.177 0.823 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.024 0.976 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.021 -4.635 -8.349 13.136 hybrid contribution 1.955 0.520 0.142 2.028 sum -7.066 -4.115 -8.207 11.585 Atomic orbital electron populations 1.21861 0.95134 1.01998 1.00663 1.21515 0.94842 0.96062 0.89861 0.93997 1.20708 0.91283 1.01714 0.97638 1.19721 0.95221 0.95732 0.99471 1.20704 0.94105 0.97376 0.99895 1.21192 0.93804 0.98953 1.01046 1.18236 0.82463 0.93577 0.96609 1.85013 1.17023 1.78774 1.48776 1.21247 0.95052 0.98348 0.99751 1.20773 0.93044 0.98933 0.99017 1.60782 1.30661 1.38439 1.02214 1.21646 0.95827 0.94318 0.91027 0.93748 1.21859 0.97860 1.00974 0.98637 1.22019 0.94475 1.00793 0.98946 1.19098 0.91340 0.95577 0.95238 1.21139 0.92507 1.41628 1.01314 0.93230 1.24928 0.98423 0.95541 0.94873 1.69931 1.25930 1.40617 1.14193 0.86726 0.84505 0.77496 0.80347 1.20135 1.21163 1.21360 0.92810 0.93181 0.92168 0.90604 0.91049 0.86732 0.86416 0.77279 0.86210 0.86147 0.82349 0.92854 0.93248 0.93550 0.93012 0.92970 0.96005 0.97628 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.81 37.16 0.33 -1.42 16 2 C 0.09 1.33 2.54 -67.71 -0.17 1.15 16 3 H 0.04 0.73 7.57 -51.93 -0.39 0.34 16 4 C -0.08 -1.04 5.01 -27.88 -0.14 -1.18 16 5 C -0.10 -1.64 4.80 -104.60 -0.50 -2.14 16 6 C -0.10 -1.70 9.69 -39.61 -0.38 -2.09 16 7 C -0.13 -2.36 9.99 -39.43 -0.39 -2.75 16 8 C 0.14 2.56 6.70 -39.22 -0.26 2.30 16 9 O -0.49 -8.93 13.50 -19.42 -0.26 -9.19 16 10 C -0.13 -2.33 9.99 -39.43 -0.39 -2.73 16 11 C -0.10 -1.70 7.20 -39.60 -0.29 -1.99 16 12 N -0.68 -11.74 6.14 -99.74 -0.61 -12.35 16 13 C 0.08 1.48 2.39 -67.71 -0.16 1.32 16 14 H 0.04 0.85 7.29 -51.93 -0.38 0.47 16 15 C -0.14 -2.08 9.42 37.16 0.35 -1.73 16 16 C -0.12 -2.68 4.58 -26.73 -0.12 -2.80 16 17 C 0.02 0.64 4.83 -27.88 -0.13 0.50 16 18 C -0.53 -15.20 9.11 -34.44 -0.31 -15.51 16 19 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 20 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 21 N -0.87 -25.68 13.29 55.43 0.74 -24.95 16 22 Si 0.88 22.38 29.54 -169.99 -5.02 17.36 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H 0.05 0.69 6.63 -51.93 -0.34 0.35 16 27 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.98 8.08 -51.94 -0.42 0.56 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.37 4.42 9.06 45.56 0.41 4.83 16 34 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 35 H 0.12 1.89 7.68 -52.48 -0.40 1.48 16 36 H 0.35 6.68 3.61 -39.29 -0.14 6.54 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.69 6.33 -51.93 -0.33 0.36 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.58 5.88 -51.93 -0.31 0.28 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -31.82 351.74 -9.04 -40.85 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.49 Total: 10.22 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -2.69 Total: -27.25 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.12 Total: -37.30 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.26 Total: -9.19 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.82 -9.04 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.537 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds