Wall clock time and date at job start Mon Mar 30 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47030 * 239.99452 * 2 1 3 5 5 C 1.50704 * 109.46977 * 174.99915 * 4 2 1 6 6 C 1.38261 * 119.94737 * 269.73354 * 5 4 2 7 7 C 1.38150 * 120.05556 * 179.72606 * 6 5 4 8 8 C 1.38731 * 119.94298 * 0.56142 * 7 6 5 9 9 O 1.35898 * 120.05672 * 179.68406 * 8 7 6 10 10 C 1.38728 * 119.88867 * 359.70803 * 8 7 6 11 11 C 1.38144 * 119.94432 * 0.02562 * 10 8 7 12 12 N 1.46898 * 109.46733 * 119.99599 * 2 1 3 13 13 C 1.46895 * 111.00147 * 281.65813 * 12 2 1 14 14 H 1.09001 * 109.47086 * 344.06129 * 13 12 2 15 15 C 1.53003 * 109.46894 * 104.06034 * 13 12 2 16 16 C 1.53004 * 109.47451 * 224.05900 * 13 12 2 17 17 C 1.53002 * 109.46796 * 64.99847 * 16 13 12 18 18 C 1.50704 * 109.46754 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99685 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00075 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99661 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00344 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47000 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47156 * 120.00226 * 22 20 18 25 25 H 1.48496 * 109.47503 * 240.00495 * 22 20 18 26 26 H 1.08997 * 109.47449 * 305.09546 * 1 2 3 27 27 H 1.09009 * 109.47025 * 65.09444 * 1 2 3 28 28 H 1.08999 * 109.47282 * 185.08607 * 1 2 3 29 29 H 1.08988 * 109.47381 * 294.99909 * 4 2 1 30 30 H 1.08999 * 109.47382 * 55.00504 * 4 2 1 31 31 H 1.08004 * 119.96998 * 359.97117 * 6 5 4 32 32 H 1.08003 * 120.02812 * 180.24722 * 7 6 5 33 33 H 0.96701 * 114.00194 * 270.02686 * 9 8 7 34 34 H 1.08003 * 120.02946 * 180.02562 * 10 8 7 35 35 H 1.08007 * 119.97068 * 179.97438 * 11 10 8 36 36 H 1.00904 * 111.00055 * 157.70530 * 12 2 1 37 37 H 1.08999 * 109.47474 * 63.97593 * 15 13 12 38 38 H 1.08996 * 109.46982 * 303.97462 * 15 13 12 39 39 H 1.09002 * 109.47057 * 183.97515 * 15 13 12 40 40 H 1.09001 * 109.47308 * 185.00052 * 16 13 12 41 41 H 1.08999 * 109.46762 * 305.00146 * 16 13 12 42 42 H 1.09001 * 109.47359 * 300.00173 * 17 16 13 43 43 H 1.08999 * 109.47220 * 60.00580 * 17 16 13 44 44 H 0.97002 * 119.99801 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.1313 0.4469 -1.9734 7 6 5.5079 0.5496 -2.0282 8 6 6.2990 -0.4201 -1.4294 9 8 7.6534 -0.3247 -1.4873 10 6 5.7052 -1.4875 -0.7718 11 6 4.3282 -1.5828 -0.7151 12 7 2.0196 -0.6924 1.1995 13 6 1.9337 0.1764 2.3808 14 1 1.7982 1.2101 2.0625 15 6 0.7448 -0.2517 3.2434 16 6 3.2235 0.0586 3.1955 17 6 4.3955 0.6035 2.3765 18 6 5.6659 0.4868 3.1787 19 1 5.6400 0.0658 4.1730 20 6 6.8614 0.9166 2.6429 21 7 6.8929 1.4288 1.4320 22 14 8.4363 0.7714 3.6369 23 1 8.1335 0.1656 4.9584 24 1 9.4037 -0.0883 2.9087 25 1 9.0238 2.1210 3.8335 26 1 -0.3634 0.5908 0.8408 27 1 -0.3633 0.4328 -0.9322 28 1 -0.3634 -1.0236 0.0911 29 1 1.7517 -1.7715 -1.2055 30 1 1.6054 -0.2619 -2.1370 31 1 3.5150 1.1988 -2.4438 32 1 5.9679 1.3814 -2.5410 33 1 8.0459 -0.7606 -2.2561 34 1 6.3189 -2.2435 -0.3045 35 1 3.8654 -2.4139 -0.2036 36 1 2.9619 -1.0272 1.0645 37 1 0.9135 -1.2606 3.6198 38 1 -0.1645 -0.2353 2.6427 39 1 0.6384 0.4360 4.0825 40 1 3.1254 0.6334 4.1164 41 1 3.4055 -0.9883 3.4382 42 1 4.4936 0.0286 1.4556 43 1 4.2135 1.6504 2.1338 44 1 7.7339 1.7315 1.0552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489258.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:53 Heat of formation + Delta-G solvation = -61.472701 kcal Electronic energy + Delta-G solvation = -22794.770905 eV Core-core repulsion = 19710.320002 eV Total energy + Delta-G solvation = -3084.450903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73862 -39.16614 -37.57531 -35.72828 -34.40101 -31.81869 -31.77772 -30.67320 -29.54866 -26.89159 -26.68235 -23.69048 -23.24322 -22.59605 -21.18258 -21.09200 -19.24661 -18.39236 -17.01135 -16.83982 -16.50677 -16.44519 -16.10394 -16.08449 -15.18246 -14.65892 -14.52600 -14.30083 -14.21767 -13.86046 -13.46519 -13.37866 -13.16485 -13.10926 -12.90531 -12.83532 -12.75807 -12.46446 -12.38208 -12.24532 -11.98184 -11.76353 -11.48981 -11.47094 -11.23620 -11.18112 -10.88458 -10.43769 -9.75085 -9.25818 -9.16315 -8.05058 -6.14690 0.48778 0.57055 1.35615 1.37878 1.48432 2.44204 2.85299 3.25173 3.37057 3.44904 3.92581 4.01006 4.08767 4.18582 4.20232 4.43561 4.48423 4.52444 4.54125 4.61719 4.69337 4.80378 4.89940 4.92336 5.02952 5.04997 5.07846 5.12987 5.18683 5.21967 5.26396 5.28973 5.47075 5.52802 5.56097 5.60358 5.67500 5.74829 5.79728 5.93075 6.10799 6.34319 6.36485 6.58596 6.95357 7.03907 7.50744 9.01165 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.008162 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.542073 B = 3429.520085 C = 5150.673708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.015 0.985 4 C -0.069 4.069 5 C -0.103 4.103 6 C -0.107 4.107 7 C -0.150 4.150 8 C 0.120 3.880 9 O -0.510 6.510 10 C -0.150 4.150 11 C -0.103 4.103 12 N -0.681 5.681 13 C 0.087 3.913 14 H 0.031 0.969 15 C -0.126 4.126 16 C -0.115 4.115 17 C 0.038 3.962 18 C -0.552 4.552 19 H 0.046 0.954 20 C 0.019 3.981 21 N -0.886 5.886 22 Si 0.942 3.058 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.398 0.602 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.341 0.659 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.012 0.988 43 H -0.030 1.030 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 -5.223 -8.925 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 H 0.034 0.966 4 C -0.106 4.106 5 C -0.103 4.103 6 C -0.125 4.125 7 C -0.169 4.169 8 C 0.076 3.924 9 O -0.322 6.322 10 C -0.169 4.169 11 C -0.121 4.121 12 N -0.316 5.316 13 C -0.023 4.023 14 H 0.049 0.951 15 C -0.184 4.184 16 C -0.153 4.153 17 C 0.001 3.999 18 C -0.590 4.590 19 H 0.064 0.936 20 C -0.182 4.182 21 N -0.523 5.523 22 Si 0.769 3.231 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.150 0.850 36 H 0.162 0.838 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.031 0.969 43 H -0.012 1.012 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.618 -5.147 -8.416 14.494 hybrid contribution 2.487 0.702 0.128 2.587 sum -8.131 -4.445 -8.288 12.432 Atomic orbital electron populations 1.21798 0.92558 1.02685 1.01815 1.21639 0.96776 0.94520 0.89628 0.96649 1.20747 0.89245 1.02709 0.97936 1.20035 0.96794 0.95011 0.98489 1.21053 0.93895 0.97939 0.99624 1.21405 0.94659 0.99125 1.01693 1.18427 0.82739 0.94079 0.97194 1.84920 1.17144 1.79435 1.50651 1.21393 0.95998 0.98758 1.00744 1.20977 0.92615 0.99628 0.98886 1.60949 1.29690 1.38148 1.02765 1.21573 0.95146 0.94066 0.91486 0.95106 1.21769 0.96971 1.01122 0.98548 1.21877 0.94671 1.00129 0.98649 1.18898 0.92420 0.93316 0.95282 1.21478 0.93950 1.42041 1.01524 0.93616 1.25652 1.01427 0.95228 0.95900 1.70060 1.26326 1.40710 1.15223 0.85758 0.80663 0.77556 0.79161 1.19398 1.20943 1.20852 0.93172 0.90911 0.91329 0.89205 0.88349 0.84419 0.85838 0.74505 0.86694 0.85019 0.83757 0.92658 0.91406 0.92718 0.93229 0.93049 0.96944 1.01211 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.81 71.98 0.63 -2.23 16 2 C 0.08 2.40 2.54 44.92 0.11 2.51 16 3 H 0.02 0.53 7.57 -2.39 -0.02 0.51 16 4 C -0.07 -1.72 5.01 29.85 0.15 -1.57 16 5 C -0.10 -3.25 4.80 -19.85 -0.10 -3.34 16 6 C -0.11 -3.50 9.69 22.25 0.22 -3.28 16 7 C -0.15 -5.47 9.99 22.37 0.22 -5.25 16 8 C 0.12 4.66 6.70 22.50 0.15 4.81 16 9 O -0.51 -19.17 13.50 -92.40 -1.25 -20.42 16 10 C -0.15 -5.76 9.99 22.36 0.22 -5.53 16 11 C -0.10 -3.53 7.20 22.25 0.16 -3.37 16 12 N -0.68 -22.48 6.14 -469.47 -2.88 -25.37 16 13 C 0.09 3.09 2.39 44.92 0.11 3.20 16 14 H 0.03 1.18 7.29 -2.39 -0.02 1.16 16 15 C -0.13 -3.58 9.42 71.98 0.68 -2.90 16 16 C -0.12 -4.97 4.58 30.60 0.14 -4.83 16 17 C 0.04 2.02 4.83 29.85 0.14 2.17 16 18 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 19 H 0.05 2.65 7.74 -2.91 -0.02 2.62 16 20 C 0.02 1.13 5.46 84.65 0.46 1.60 16 21 N -0.89 -53.25 13.29 21.45 0.28 -52.96 16 22 Si 0.94 46.29 29.54 68.60 2.03 48.32 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 26 H 0.05 1.14 6.63 -2.39 -0.02 1.12 16 27 H 0.07 1.27 8.14 -2.38 -0.02 1.26 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 30 H 0.10 1.94 8.08 -2.39 -0.02 1.92 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.40 9.68 9.06 -74.06 -0.67 9.01 16 34 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.13 4.08 7.68 -2.91 -0.02 4.06 16 36 H 0.34 12.74 3.61 -89.69 -0.32 12.41 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.68 6.33 -2.39 -0.02 1.67 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.01 0.68 5.88 -2.39 -0.01 0.67 16 43 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -68.63 351.74 1.70 -66.93 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.02 Total: 33.56 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 3.54 Total: -50.06 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -2.60 Total: -78.33 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -1.25 Total: -20.42 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -68.63 1.70 -66.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489258.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.454 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds