Wall clock time and date at job start Mon Mar 30 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46763 * 2 1 4 4 C 1.52997 * 109.46852 * 119.99524 * 2 1 3 5 5 C 1.53008 * 109.46886 * 185.00098 * 4 2 1 6 6 C 1.50704 * 109.46860 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00157 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99765 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99789 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00250 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47301 * 90.00084 * 10 8 6 12 12 H 1.48495 * 109.47440 * 210.00582 * 10 8 6 13 13 H 1.48503 * 109.47024 * 330.00416 * 10 8 6 14 14 N 1.46895 * 109.47229 * 239.99811 * 2 1 3 15 15 C 1.46897 * 111.00193 * 84.99969 * 14 2 1 16 16 H 1.08997 * 109.47227 * 325.00086 * 15 14 2 17 17 C 1.53005 * 109.47292 * 84.99996 * 15 14 2 18 18 C 1.53002 * 109.47297 * 204.99974 * 15 14 2 19 19 C 1.50697 * 109.46967 * 65.00067 * 18 15 14 20 20 C 1.38270 * 119.94421 * 270.25509 * 19 18 15 21 21 C 1.38138 * 120.05794 * 180.26220 * 20 19 18 22 22 C 1.38736 * 119.94337 * 359.46080 * 21 20 19 23 23 O 1.35893 * 120.05957 * 180.30421 * 22 21 20 24 24 C 1.38740 * 119.88595 * 0.28279 * 22 21 20 25 25 C 1.38146 * 119.94197 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.46763 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47354 * 300.00638 * 1 2 3 28 28 H 1.09000 * 109.46611 * 60.00205 * 1 2 3 29 29 H 1.09002 * 109.47399 * 304.99918 * 4 2 1 30 30 H 1.09001 * 109.47345 * 65.00271 * 4 2 1 31 31 H 1.08992 * 109.47032 * 300.00060 * 5 4 2 32 32 H 1.08996 * 109.46888 * 60.00673 * 5 4 2 33 33 H 0.97006 * 119.99594 * 179.97438 * 9 8 6 34 34 H 1.00900 * 111.00333 * 321.04187 * 14 2 1 35 35 H 1.08997 * 109.46911 * 59.99896 * 17 15 14 36 36 H 1.08993 * 109.47373 * 179.97438 * 17 15 14 37 37 H 1.09006 * 109.46748 * 300.00468 * 17 15 14 38 38 H 1.08999 * 109.46732 * 304.99847 * 18 15 14 39 39 H 1.09002 * 109.47090 * 185.00164 * 18 15 14 40 40 H 1.08004 * 119.97397 * 0.02562 * 20 19 18 41 41 H 1.08002 * 120.03311 * 179.74549 * 21 20 19 42 42 H 0.96702 * 114.00269 * 89.99703 * 23 22 21 43 43 H 1.07993 * 120.02463 * 180.02562 * 24 22 21 44 44 H 1.08006 * 119.96944 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5440 7 1 3.3687 -1.8044 3.2132 8 6 5.4184 -1.3602 2.8158 9 7 5.8567 -1.9802 3.8896 10 14 6.6265 -0.5288 1.6588 11 1 6.8311 0.8790 2.0848 12 1 7.9237 -1.2506 1.6953 13 1 6.0850 -0.5538 0.2762 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2225 -2.3469 16 1 1.2577 0.9328 -2.2907 17 6 3.4112 0.9808 -2.3224 18 6 1.9771 -0.5799 -3.6453 19 6 0.6192 -1.2282 -3.7263 20 6 0.4242 -2.4901 -3.1959 21 6 -0.8183 -3.0889 -3.2736 22 6 -1.8737 -2.4184 -3.8747 23 8 -3.0985 -3.0027 -3.9469 24 6 -1.6768 -1.1501 -4.4014 25 6 -0.4310 -0.5579 -4.3258 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.6054 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.9995 -1.0727 0.4261 32 1 3.8532 0.4371 1.3575 33 1 6.8074 -2.0059 4.0806 34 1 1.4497 -1.4980 -1.4099 35 1 4.2360 0.2705 -2.3785 36 1 3.4580 1.6594 -3.1740 37 1 3.4863 1.5524 -1.3972 38 1 2.7488 -1.3495 -3.6604 39 1 2.1126 0.0872 -4.4967 40 1 1.2449 -3.0098 -2.7237 41 1 -0.9691 -4.0763 -2.8628 42 1 -3.6694 -2.8147 -3.1894 43 1 -2.4969 -0.6260 -4.8694 44 1 -0.2771 0.4292 -4.7361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:56 Heat of formation + Delta-G solvation = -64.046442 kcal Electronic energy + Delta-G solvation = -21778.675997 eV Core-core repulsion = 18694.113488 eV Total energy + Delta-G solvation = -3084.562509 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88145 -39.22504 -37.67354 -35.75468 -34.51791 -32.18440 -31.92006 -31.17132 -29.12634 -27.14021 -26.87908 -23.79339 -23.10331 -22.55556 -21.29210 -21.21058 -19.32949 -18.80184 -17.16747 -16.91756 -16.55162 -16.27339 -16.23111 -15.91294 -15.29004 -14.79050 -14.62440 -14.38605 -14.32782 -14.01260 -13.81814 -13.71838 -13.29098 -13.24635 -12.98185 -12.88397 -12.80194 -12.54100 -12.25563 -12.00330 -11.94322 -11.78893 -11.60686 -11.41890 -11.35146 -11.32485 -11.06077 -10.70450 -9.94170 -9.39287 -9.10693 -8.25003 -6.26894 0.26533 0.39932 1.36871 1.39762 1.54459 2.40912 2.66409 3.11541 3.32901 3.34145 3.82365 3.92591 4.00276 4.06825 4.17058 4.30364 4.37646 4.45189 4.49055 4.51059 4.63217 4.72385 4.82071 4.85059 4.92628 4.96302 5.01241 5.02308 5.08893 5.15647 5.20729 5.25680 5.35918 5.39028 5.48146 5.51139 5.61460 5.67419 5.73810 5.81417 5.91986 6.35000 6.36972 6.67795 6.82026 6.84770 7.37530 8.92252 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.004067 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.529742 B = 6882.690336 C = 7332.740121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.071 0.929 4 C -0.085 4.085 5 C 0.005 3.995 6 C -0.529 4.529 7 H 0.026 0.974 8 C 0.001 3.999 9 N -0.957 5.957 10 Si 0.951 3.049 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.244 1.244 14 N -0.691 5.691 15 C 0.093 3.907 16 H 0.050 0.950 17 C -0.142 4.142 18 C -0.079 4.079 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.152 4.152 22 C 0.090 3.910 23 O -0.513 6.513 24 C -0.149 4.149 25 C -0.101 4.101 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.029 0.971 32 H 0.004 0.996 33 H 0.264 0.736 34 H 0.342 0.658 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.408 0.592 43 H 0.142 0.858 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.566 5.430 -20.695 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.032 4.032 6 C -0.567 4.567 7 H 0.045 0.955 8 C -0.195 4.195 9 N -0.599 5.599 10 Si 0.775 3.225 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.167 1.167 14 N -0.325 5.325 15 C -0.017 4.017 16 H 0.068 0.932 17 C -0.199 4.199 18 C -0.116 4.116 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.171 4.171 22 C 0.046 3.954 23 O -0.326 6.326 24 C -0.167 4.167 25 C -0.119 4.119 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.267 0.733 43 H 0.159 0.841 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.563 5.246 -20.977 26.070 hybrid contribution -0.386 0.024 0.705 0.804 sum -14.949 5.270 -20.272 25.733 Atomic orbital electron populations 1.22359 0.96193 1.01868 1.02203 1.21526 0.92839 0.97382 0.90163 0.91117 1.21337 0.96138 0.99022 0.95783 1.19328 0.94357 0.94812 0.94713 1.21674 0.92542 1.33859 1.08656 0.95546 1.26017 1.00702 0.95875 0.96860 1.70092 1.15085 1.45951 1.28728 0.85633 0.77480 0.78518 0.80879 1.19438 1.21261 1.16717 1.60631 1.58260 1.10033 1.03560 1.21479 0.97268 0.93638 0.89285 0.93237 1.21838 0.96949 0.99701 1.01457 1.20809 0.93215 0.99907 0.97709 1.20050 0.96326 0.94624 0.98524 1.21143 0.97152 0.95368 0.99299 1.21574 0.93485 1.01237 1.00772 1.18626 0.85939 0.91912 0.98950 1.84759 1.24287 1.74136 1.49398 1.21610 0.98869 0.94474 1.01766 1.21168 0.91637 1.00456 0.98637 0.92905 0.91898 0.92025 0.93615 0.94044 0.95248 0.97740 0.92739 0.83703 0.93403 0.90379 0.94076 0.90617 0.88229 0.85424 0.85036 0.73338 0.84065 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 9.15 71.98 0.66 -3.43 16 2 C 0.09 2.76 2.40 44.92 0.11 2.87 16 3 H 0.07 2.18 7.11 -2.39 -0.02 2.16 16 4 C -0.08 -3.39 4.83 30.60 0.15 -3.24 16 5 C 0.01 0.26 3.93 29.85 0.12 0.38 16 6 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 7 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 8 C 0.00 0.07 5.47 84.65 0.46 0.53 16 9 N -0.96 -62.16 13.96 21.45 0.30 -61.86 16 10 Si 0.95 46.28 27.47 68.60 1.88 48.17 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 13 H -0.24 -11.13 6.54 99.48 0.65 -10.48 16 14 N -0.69 -19.60 5.51 -469.47 -2.59 -22.18 16 15 C 0.09 2.07 2.45 44.92 0.11 2.18 16 16 H 0.05 1.04 7.11 -2.39 -0.02 1.02 16 17 C -0.14 -3.36 9.40 71.98 0.68 -2.68 16 18 C -0.08 -1.44 4.98 29.85 0.15 -1.30 16 19 C -0.10 -1.78 4.85 -19.85 -0.10 -1.87 16 20 C -0.11 -2.28 8.03 22.25 0.18 -2.10 16 21 C -0.15 -3.03 9.99 22.37 0.22 -2.81 16 22 C 0.09 1.70 6.71 22.51 0.15 1.85 16 23 O -0.51 -8.61 13.50 -92.34 -1.25 -9.86 16 24 C -0.15 -2.49 9.99 22.37 0.22 -2.27 16 25 C -0.10 -1.65 9.69 22.25 0.22 -1.43 16 26 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.31 7.43 -2.39 -0.02 1.29 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.03 1.44 6.81 -2.39 -0.02 1.43 16 32 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 33 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 34 H 0.34 9.12 5.21 -89.69 -0.47 8.65 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.11 7.43 -2.38 -0.02 1.09 16 38 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 39 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.13 2.67 7.51 -2.91 -0.02 2.65 16 41 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.41 3.09 9.06 -74.06 -0.67 2.42 16 43 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -72.15 353.42 1.70 -70.45 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.22 Total: 20.22 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 3.57 Total: -44.93 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.29 Total: -84.05 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.25 Total: -9.86 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Total: -72.15 1.70 -70.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.403 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds