Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00003 * 2 1 4 4 C 1.52996 * 109.47166 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47223 * 185.00113 * 4 3 2 6 6 N 1.46903 * 109.47290 * 64.99820 * 4 3 2 7 7 C 1.46895 * 110.99731 * 85.00004 * 6 4 3 8 8 H 1.09000 * 109.47380 * 324.99790 * 7 6 4 9 9 C 1.53005 * 109.47120 * 85.00230 * 7 6 4 10 10 C 1.53004 * 109.47012 * 205.00190 * 7 6 4 11 11 C 1.52993 * 109.47212 * 65.00212 * 10 7 6 12 12 C 1.50695 * 109.47379 * 179.97438 * 11 10 7 13 13 H 1.08008 * 119.99874 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00645 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99654 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00487 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47403 * 90.00093 * 16 14 12 18 18 H 1.48501 * 109.47124 * 210.00322 * 16 14 12 19 19 H 1.48500 * 109.47181 * 330.00116 * 16 14 12 20 20 C 1.50706 * 109.47066 * 305.00256 * 4 3 2 21 21 C 1.38233 * 120.00109 * 79.72383 * 20 4 3 22 22 C 1.38237 * 119.99743 * 179.80918 * 21 20 4 23 23 C 1.38233 * 120.00125 * 0.40204 * 22 21 20 24 24 C 1.38238 * 120.00012 * 359.85160 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.95693 * 24 23 22 26 26 H 1.08994 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47006 * 300.00200 * 1 2 3 28 28 H 1.09002 * 109.47257 * 59.99638 * 1 2 3 29 29 H 1.08995 * 109.47008 * 59.99961 * 3 2 1 30 30 H 1.09003 * 109.46841 * 300.00064 * 3 2 1 31 31 H 1.00899 * 110.99523 * 321.04785 * 6 4 3 32 32 H 1.09000 * 109.46668 * 179.97438 * 9 7 6 33 33 H 1.08997 * 109.46731 * 299.99961 * 9 7 6 34 34 H 1.09000 * 109.46988 * 60.00230 * 9 7 6 35 35 H 1.09004 * 109.47131 * 184.99880 * 10 7 6 36 36 H 1.08997 * 109.47286 * 304.99966 * 10 7 6 37 37 H 1.08999 * 109.47427 * 300.00203 * 11 10 7 38 38 H 1.09003 * 109.47174 * 60.00165 * 11 10 7 39 39 H 0.96995 * 120.00194 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99934 * 0.02562 * 21 20 4 41 41 H 1.07999 * 119.99896 * 180.23009 * 22 21 20 42 42 H 1.08002 * 120.00311 * 179.83689 * 23 22 21 43 43 H 1.08000 * 120.00524 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00181 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 0.0889 6 7 3.9768 0.5627 -1.2562 7 6 4.1189 1.5664 -2.3193 8 1 3.3521 2.3320 -2.2010 9 6 5.5029 2.2124 -2.2292 10 6 3.9590 0.8910 -3.6829 11 6 2.5334 0.3534 -3.8217 12 6 2.3758 -0.3113 -5.1650 13 1 3.2093 -0.3470 -5.8510 14 6 1.1679 -0.8747 -5.5180 15 7 0.1531 -0.8316 -4.6825 16 14 0.9727 -1.6991 -7.1827 17 1 1.3270 -3.1367 -7.0678 18 1 -0.4355 -1.5712 -7.6364 19 1 1.8714 -1.0450 -8.1675 20 6 3.9723 0.3324 1.1629 21 6 3.8923 -1.0451 1.0791 22 6 4.2968 -1.8270 2.1450 23 6 4.7734 -1.2312 3.2976 24 6 4.8485 0.1465 3.3834 25 6 4.4477 0.9283 2.3161 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.3465 -0.1737 -1.5360 32 1 5.6084 2.9568 -3.0184 33 1 5.6167 2.6935 -1.2578 34 1 6.2696 1.4468 -2.3477 35 1 4.1520 1.6170 -4.4728 36 1 4.6678 0.0671 -3.7656 37 1 2.3403 -0.3725 -3.0319 38 1 1.8247 1.1774 -3.7391 39 1 -0.6968 -1.2276 -4.9309 40 1 3.5171 -1.5105 0.1796 41 1 4.2378 -2.9033 2.0781 42 1 5.0869 -1.8420 4.1313 43 1 5.2205 0.6121 4.2841 44 1 4.5060 2.0046 2.3832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489566.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = -53.520684 kcal Electronic energy + Delta-G solvation = -22183.677329 eV Core-core repulsion = 19099.571251 eV Total energy + Delta-G solvation = -3084.106078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62873 -38.92767 -37.95442 -35.44589 -34.11013 -31.69712 -31.48540 -30.33907 -28.83459 -27.17890 -26.77099 -24.31466 -23.42532 -23.10029 -21.37542 -20.91862 -18.54631 -17.84459 -17.42677 -16.91329 -16.72307 -16.52566 -16.23215 -15.97251 -15.48886 -14.95480 -14.63600 -14.37661 -14.13044 -14.05016 -13.83456 -13.58103 -13.26746 -13.11682 -13.00947 -12.83782 -12.82030 -12.44918 -12.35745 -12.32091 -11.99907 -11.72828 -11.61678 -11.57605 -11.27907 -10.92777 -10.61923 -10.52499 -9.66567 -9.50621 -9.24396 -8.18179 -6.28367 0.59074 0.68160 1.38806 1.39763 1.50429 2.40941 2.74909 3.06340 3.14529 3.40449 3.83695 3.98246 4.14319 4.16732 4.29405 4.30746 4.37299 4.40270 4.44630 4.45036 4.50136 4.56177 4.64072 4.79092 4.82257 4.84183 4.87744 5.02062 5.06263 5.10430 5.23474 5.24453 5.32451 5.46792 5.54755 5.69358 5.72231 5.77137 5.86496 5.88746 6.15041 6.25104 6.27540 6.37964 6.45790 6.87498 7.40051 8.92543 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019368 B = 0.004667 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.316051 B = 5998.139039 C = 6516.740843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.396 6.396 3 C 0.036 3.964 4 C 0.131 3.869 5 H 0.111 0.889 6 N -0.678 5.678 7 C 0.086 3.914 8 H 0.032 0.968 9 C -0.127 4.127 10 C -0.103 4.103 11 C 0.035 3.965 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.005 3.995 15 N -0.925 5.925 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.265 1.265 20 C -0.070 4.070 21 C -0.094 4.094 22 C -0.139 4.139 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.125 4.125 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.344 0.656 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.051 0.949 37 H -0.003 1.003 38 H -0.018 1.018 39 H 0.261 0.739 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 4.760 16.096 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.315 6.315 3 C -0.042 4.042 4 C 0.021 3.979 5 H 0.129 0.871 6 N -0.311 5.311 7 C -0.023 4.023 8 H 0.050 0.950 9 C -0.185 4.185 10 C -0.141 4.141 11 C -0.002 4.002 12 C -0.582 4.582 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.565 5.565 16 Si 0.784 3.216 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.070 4.070 21 C -0.113 4.113 22 C -0.157 4.157 23 C -0.147 4.147 24 C -0.145 4.145 25 C -0.143 4.143 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.166 0.834 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.015 0.985 38 H 0.000 1.000 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.712 4.562 16.253 18.559 hybrid contribution -1.896 -0.265 -1.414 2.380 sum 5.816 4.297 14.839 16.507 Atomic orbital electron populations 1.22711 0.80405 1.03020 0.99736 1.87852 1.20473 1.27855 1.95329 1.23238 0.95511 0.85243 1.00202 1.20675 0.90190 0.97946 0.89117 0.87140 1.60760 1.54634 1.12790 1.02888 1.21570 0.97482 0.92822 0.90472 0.95022 1.21719 0.95155 0.99890 1.01701 1.21657 0.97594 0.99289 0.95590 1.18912 0.92080 0.94025 0.95214 1.21677 0.97223 1.36631 1.02696 0.92646 1.25880 0.95703 0.96791 1.00938 1.70091 1.02730 1.46163 1.37550 0.85542 0.77371 0.78914 0.79787 1.19980 1.20740 1.18942 1.19662 0.98866 0.93858 0.94630 1.20915 0.98178 0.94041 0.98159 1.21344 1.00052 1.00272 0.94021 1.21390 0.99811 0.95558 0.97931 1.21366 1.00180 0.93861 0.99104 1.21227 0.99480 1.00739 0.92855 0.89621 0.92242 0.95660 0.91369 0.94714 0.83444 0.91803 0.91905 0.92694 0.92416 0.93025 0.98472 1.00015 0.92990 0.88341 0.85657 0.84147 0.83653 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 11.01 113.37 1.25 2.44 16 2 O -0.40 -14.11 8.48 -148.98 -1.26 -15.38 16 3 C 0.04 1.12 5.58 71.98 0.40 1.53 16 4 C 0.13 3.83 2.46 44.17 0.11 3.94 16 5 H 0.11 2.76 6.97 -2.39 -0.02 2.74 16 6 N -0.68 -23.59 5.52 -473.30 -2.61 -26.20 16 7 C 0.09 2.97 2.44 44.92 0.11 3.08 16 8 H 0.03 1.12 7.10 -2.39 -0.02 1.10 16 9 C -0.13 -3.48 9.40 71.98 0.68 -2.81 16 10 C -0.10 -4.36 4.74 30.59 0.15 -4.21 16 11 C 0.03 1.85 4.80 29.84 0.14 1.99 16 12 C -0.54 -31.47 9.11 25.60 0.23 -31.24 16 13 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 14 C 0.01 0.30 5.46 84.65 0.46 0.76 16 15 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 16 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 C -0.07 -1.97 4.83 -19.86 -0.10 -2.06 16 21 C -0.09 -2.92 8.31 22.27 0.19 -2.74 16 22 C -0.14 -3.62 10.05 22.27 0.22 -3.40 16 23 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 24 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 25 C -0.12 -2.83 9.67 22.27 0.22 -2.62 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 1.20 7.37 -2.39 -0.02 1.18 16 31 H 0.34 14.29 5.03 -89.69 -0.45 13.84 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.49 7.43 -2.39 -0.02 1.47 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.00 -0.17 6.43 -2.39 -0.02 -0.18 16 38 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.10 3.54 6.99 -2.91 -0.02 3.52 16 41 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.14 2.42 8.04 -2.91 -0.02 2.39 16 Total: -1.00 -65.74 354.96 3.44 -62.30 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.50 Total: 28.47 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 4.50 Total: -40.22 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -2.33 Total: -82.09 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -1.26 Total: -15.38 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.74 3.44 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489566.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.775 kcal (2) G-P(sol) polarization free energy of solvation -65.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds