Wall clock time and date at job start Mon Mar 30 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46789 * 2 1 4 4 C 1.53002 * 109.46921 * 240.00967 * 2 1 3 5 5 O 1.42902 * 109.47053 * 304.99523 * 4 2 1 6 6 C 1.35901 * 117.00104 * 180.02562 * 5 4 2 7 7 C 1.38730 * 120.05163 * 359.72303 * 6 5 4 8 8 C 1.38151 * 119.94033 * 179.74574 * 7 6 5 9 9 C 1.38276 * 120.05139 * 0.50915 * 8 7 6 10 10 C 1.38257 * 120.11345 * 359.77079 * 9 8 7 11 11 C 1.38151 * 120.05707 * 359.97105 * 10 9 8 12 12 N 1.46897 * 109.47354 * 120.00548 * 2 1 3 13 13 C 1.46904 * 111.00032 * 205.93896 * 12 2 1 14 14 H 1.08997 * 109.46909 * 324.15010 * 13 12 2 15 15 C 1.53004 * 109.46878 * 84.14825 * 13 12 2 16 16 C 1.52998 * 109.47288 * 204.14721 * 13 12 2 17 17 C 1.52995 * 109.47041 * 64.99885 * 16 13 12 18 18 C 1.50696 * 109.47334 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99839 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00556 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99608 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00473 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46911 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47275 * 120.00208 * 22 20 18 25 25 H 1.48501 * 109.47573 * 240.00425 * 22 20 18 26 26 H 1.09004 * 109.47063 * 185.30471 * 1 2 3 27 27 H 1.08999 * 109.47207 * 305.30131 * 1 2 3 28 28 H 1.09002 * 109.47302 * 65.30153 * 1 2 3 29 29 H 1.08993 * 109.47788 * 65.00129 * 4 2 1 30 30 H 1.09007 * 109.46592 * 184.99926 * 4 2 1 31 31 H 1.07991 * 120.03152 * 0.02562 * 7 6 5 32 32 H 1.07995 * 119.97406 * 180.28101 * 8 7 6 33 33 H 1.08000 * 119.93554 * 179.74249 * 9 8 7 34 34 H 1.08005 * 119.97218 * 179.97438 * 10 9 8 35 35 H 1.07998 * 120.02750 * 179.97438 * 11 10 9 36 36 H 1.00894 * 110.99698 * 329.89241 * 12 2 1 37 37 H 1.09000 * 109.47014 * 175.17649 * 15 13 12 38 38 H 1.09006 * 109.46843 * 295.17019 * 15 13 12 39 39 H 1.08992 * 109.47360 * 55.17368 * 15 13 12 40 40 H 1.09000 * 109.47258 * 185.00318 * 16 13 12 41 41 H 1.09008 * 109.46569 * 305.00438 * 16 13 12 42 42 H 1.09000 * 109.47448 * 300.00316 * 17 16 13 43 43 H 1.08999 * 109.47006 * 59.99975 * 17 16 13 44 44 H 0.97004 * 119.99568 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 8 1.4702 -2.0302 -1.3097 6 6 1.8234 -2.8087 -2.3662 7 6 2.6957 -2.3205 -3.3280 8 6 3.0573 -3.1158 -4.3982 9 6 2.5422 -4.3935 -4.5167 10 6 1.6681 -4.8802 -3.5624 11 6 1.3076 -4.0908 -2.4875 12 7 2.0197 -0.6926 1.1993 13 6 3.3580 -0.2157 1.5731 14 1 3.9309 0.0019 0.6718 15 6 3.2296 1.0553 2.4152 16 6 4.0757 -1.2954 2.3855 17 6 4.3149 -2.5225 1.5037 18 6 5.0213 -3.5862 2.3040 19 1 5.2746 -3.4050 3.3382 20 6 5.3442 -4.7909 1.7162 21 7 5.0361 -5.0115 0.4568 22 14 6.2204 -6.1091 2.7081 23 1 6.4526 -5.6166 4.0897 24 1 5.3814 -7.3337 2.7541 25 1 7.5232 -6.4254 2.0694 26 1 -0.3633 -1.0233 0.0950 27 1 -0.3633 0.5939 0.8387 28 1 -0.3634 0.4294 -0.9337 29 1 1.7517 -0.1581 -2.1370 30 1 3.1263 -0.7992 -1.2057 31 1 3.0954 -1.3213 -3.2379 32 1 3.7400 -2.7379 -5.1449 33 1 2.8229 -5.0121 -5.3563 34 1 1.2668 -5.8784 -3.6574 35 1 0.6244 -4.4713 -1.7426 36 1 1.3720 -0.5897 1.9660 37 1 4.2160 1.3611 2.7641 38 1 2.7961 1.8507 1.8087 39 1 2.5855 0.8598 3.2723 40 1 5.0320 -0.9092 2.7381 41 1 3.4599 -1.5765 3.2400 42 1 3.3586 -2.9087 1.1511 43 1 4.9305 -2.2414 0.6492 44 1 5.2630 -5.8591 0.0434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:10 Heat of formation + Delta-G solvation = -48.764212 kcal Electronic energy + Delta-G solvation = -22094.850055 eV Core-core repulsion = 19010.950233 eV Total energy + Delta-G solvation = -3083.899822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96698 -39.17813 -37.87814 -35.59739 -34.20999 -31.90643 -31.44744 -30.54897 -28.97865 -27.79898 -26.94853 -23.67133 -23.27233 -23.12044 -21.37286 -21.16246 -19.16284 -18.34403 -17.31037 -16.84007 -16.62987 -16.49299 -16.16613 -15.72733 -15.53344 -14.93711 -14.55486 -14.42982 -14.25483 -14.00987 -13.86906 -13.76728 -13.29166 -13.21338 -13.12022 -12.87572 -12.44074 -12.42018 -12.35788 -12.23957 -12.14970 -11.82501 -11.66313 -11.57563 -11.40810 -11.20362 -10.91541 -10.47019 -9.86435 -9.08384 -9.00924 -8.10103 -6.21444 0.47804 0.62212 1.37489 1.38407 1.51132 2.42731 2.43482 2.94895 3.20477 3.25421 3.85595 3.97458 4.02755 4.06945 4.12255 4.27808 4.32960 4.33581 4.41207 4.47337 4.56377 4.61774 4.71163 4.78867 4.81501 4.83820 4.97492 5.04396 5.08138 5.13704 5.15516 5.29752 5.37458 5.47096 5.49488 5.53928 5.60190 5.65000 5.90239 5.98036 6.07158 6.32465 6.36717 6.64867 6.69228 6.98297 7.45960 8.99670 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.007360 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.934580 B = 3803.349479 C = 6112.138647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 H 0.082 0.918 4 C 0.070 3.930 5 O -0.309 6.309 6 C 0.120 3.880 7 C -0.225 4.225 8 C -0.087 4.087 9 C -0.171 4.171 10 C -0.085 4.085 11 C -0.177 4.177 12 N -0.685 5.685 13 C 0.090 3.910 14 H 0.057 0.943 15 C -0.168 4.168 16 C -0.089 4.089 17 C 0.048 3.952 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.001 3.999 21 N -0.922 5.922 22 Si 0.957 3.043 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.278 1.278 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.035 0.965 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.119 0.881 36 H 0.346 0.654 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.002 0.998 43 H -0.032 1.032 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 10.779 -6.949 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 H 0.100 0.900 4 C -0.006 4.006 5 O -0.222 6.222 6 C 0.074 3.926 7 C -0.244 4.244 8 C -0.105 4.105 9 C -0.189 4.189 10 C -0.103 4.103 11 C -0.196 4.196 12 N -0.318 5.318 13 C -0.019 4.019 14 H 0.075 0.925 15 C -0.226 4.226 16 C -0.127 4.127 17 C 0.011 3.989 18 C -0.583 4.583 19 H 0.071 0.929 20 C -0.197 4.197 21 N -0.562 5.562 22 Si 0.782 3.218 23 H -0.187 1.187 24 H -0.206 1.206 25 H -0.204 1.204 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.020 0.980 43 H -0.013 1.013 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.608 10.092 -7.250 15.117 hybrid contribution 0.684 -0.106 0.681 0.971 sum -7.925 9.986 -6.569 14.341 Atomic orbital electron populations 1.21805 0.92685 1.02371 1.03058 1.21615 0.96535 0.94867 0.88974 0.90033 1.23026 0.96873 0.81405 0.99281 1.86116 1.66348 1.27136 1.42625 1.19360 0.94374 0.91799 0.87074 1.21419 1.02968 1.02423 0.97603 1.21273 0.98060 0.94173 0.97004 1.21348 0.99818 0.96640 1.01065 1.21238 0.96687 0.99578 0.92811 1.20619 1.05107 0.92811 1.01026 1.60340 1.03415 1.60490 1.07536 1.21547 0.90045 0.93102 0.97252 0.92518 1.22397 1.02750 0.97205 1.00298 1.21464 0.97934 0.95474 0.97851 1.18714 0.94511 0.92494 0.93219 1.21811 1.37788 1.00812 0.97875 0.92894 1.25929 0.96932 1.00855 0.95991 1.70171 1.48348 1.24641 1.13089 0.85532 0.78210 0.78922 0.79166 1.18706 1.20565 1.20414 0.93117 0.90806 0.90785 0.90302 0.94669 0.85112 0.83545 0.83382 0.83505 0.86303 0.83351 0.91912 0.91414 0.91873 0.93458 0.93567 0.97982 1.01341 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.88 71.98 0.64 -2.46 16 2 C 0.09 2.35 2.82 44.92 0.13 2.48 16 3 H 0.08 1.75 7.09 -2.39 -0.02 1.73 16 4 C 0.07 2.19 4.48 71.98 0.32 2.51 16 5 O -0.31 -11.95 9.31 -92.43 -0.86 -12.81 16 6 C 0.12 4.62 6.69 22.50 0.15 4.78 16 7 C -0.23 -7.67 9.04 22.37 0.20 -7.47 16 8 C -0.09 -2.59 10.04 22.26 0.22 -2.36 16 9 C -0.17 -4.88 10.04 22.28 0.22 -4.66 16 10 C -0.09 -2.67 10.04 22.25 0.22 -2.45 16 11 C -0.18 -6.59 9.99 22.37 0.22 -6.37 16 12 N -0.68 -22.11 5.46 -469.46 -2.56 -24.67 16 13 C 0.09 3.00 2.39 44.92 0.11 3.11 16 14 H 0.06 2.01 7.17 -2.39 -0.02 1.99 16 15 C -0.17 -4.02 9.16 71.98 0.66 -3.36 16 16 C -0.09 -3.82 4.83 30.59 0.15 -3.68 16 17 C 0.05 2.69 4.86 29.85 0.15 2.83 16 18 C -0.54 -32.97 9.11 25.60 0.23 -32.74 16 19 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.92 -59.27 13.29 21.45 0.28 -58.98 16 22 Si 0.96 46.70 29.54 68.60 2.03 48.72 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H 0.05 1.37 7.74 -2.38 -0.02 1.35 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.97 7.65 -2.39 -0.02 1.95 16 30 H 0.03 1.28 6.97 -2.38 -0.02 1.26 16 31 H 0.13 3.98 6.30 -2.92 -0.02 3.96 16 32 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 33 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 34 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.35 9.93 8.04 -89.70 -0.72 9.21 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.33 7.44 -2.38 -0.02 1.31 16 39 H 0.06 1.42 8.05 -2.39 -0.02 1.40 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.00 0.11 7.75 -2.39 -0.02 0.09 16 43 H -0.03 -1.98 8.14 -2.39 -0.02 -1.99 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -74.18 358.08 3.21 -70.96 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.23 Total: 26.10 kcal Atomic # 6 Polarization: -53.41 SS G_CDS: 4.09 Total: -49.32 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.28 Total: -83.66 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.86 Total: -12.81 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.18 3.21 -70.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.199 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds