Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30890 * 125.61928 * 2 1 4 4 C 1.33513 * 108.92545 * 179.97438 * 3 2 1 5 5 C 1.34231 * 108.18327 * 0.08035 * 4 3 2 6 6 N 1.35442 * 125.62866 * 179.97438 * 2 1 3 7 7 C 1.46500 * 126.60996 * 359.97438 * 6 2 1 8 8 H 1.08994 * 109.47432 * 358.89503 * 7 6 2 9 9 C 1.52997 * 109.47317 * 118.90278 * 7 6 2 10 10 C 1.53005 * 109.46661 * 238.90035 * 7 6 2 11 11 C 1.52996 * 109.46983 * 174.99907 * 10 7 6 12 12 C 1.50708 * 109.46882 * 179.97438 * 11 10 7 13 13 H 1.07995 * 120.00338 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99760 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00102 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47251 * 89.99744 * 16 14 12 18 18 H 1.48502 * 109.47371 * 209.99668 * 16 14 12 19 19 H 1.48505 * 109.46829 * 329.99989 * 16 14 12 20 20 C 1.51808 * 124.43324 * 179.72298 * 5 4 3 21 21 C 1.53841 * 106.82066 * 64.34394 * 20 5 4 22 22 N 1.44747 * 110.67790 * 281.00851 * 21 20 5 23 23 C 1.44716 * 118.94333 * 74.91088 * 22 21 20 24 24 C 1.51931 * 127.67308 * 180.11315 * 4 3 2 25 25 H 1.08999 * 109.47081 * 86.17258 * 1 2 3 26 26 H 1.09009 * 109.46831 * 206.17025 * 1 2 3 27 27 H 1.09000 * 109.47319 * 326.16936 * 1 2 3 28 28 H 1.09004 * 109.47146 * 186.61728 * 9 7 6 29 29 H 1.08997 * 109.47197 * 306.61991 * 9 7 6 30 30 H 1.09001 * 109.47416 * 66.62031 * 9 7 6 31 31 H 1.09000 * 109.47225 * 295.00116 * 10 7 6 32 32 H 1.09005 * 109.47441 * 54.99839 * 10 7 6 33 33 H 1.09000 * 109.47310 * 300.00156 * 11 10 7 34 34 H 1.08997 * 109.47275 * 60.00564 * 11 10 7 35 35 H 0.97004 * 120.00112 * 180.02562 * 15 14 12 36 36 H 1.08992 * 110.01935 * 304.99848 * 20 5 4 37 37 H 1.09002 * 109.95360 * 183.64958 * 20 5 4 38 38 H 1.08997 * 109.23065 * 160.71351 * 21 20 5 39 39 H 1.08999 * 109.23095 * 41.30442 * 21 20 5 40 40 H 1.00893 * 110.99968 * 205.52434 * 22 21 20 41 41 H 1.08997 * 109.20367 * 45.30310 * 23 22 21 42 42 H 1.08999 * 109.20549 * 164.60916 * 23 22 21 43 43 H 1.08998 * 109.97561 * 356.74810 * 24 4 3 44 44 H 1.08995 * 109.97327 * 235.41507 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2693 1.0640 0.0000 4 6 3.5482 0.6805 0.0006 5 6 3.5830 -0.6614 -0.0009 6 7 2.2960 -1.1009 0.0005 7 6 1.8491 -2.4961 0.0016 8 1 0.7598 -2.5287 0.0219 9 6 2.3570 -3.1954 -1.2608 10 6 2.4036 -3.2081 1.2372 11 6 1.8369 -4.6276 1.3050 12 6 2.3836 -5.3291 2.5216 13 1 3.0665 -4.8139 3.1808 14 6 2.0110 -6.6284 2.7938 15 7 2.4876 -7.2404 3.8557 16 14 0.8292 -7.5194 1.6541 17 1 1.5976 -8.2239 0.5966 18 1 0.0397 -8.5068 2.4333 19 1 -0.0894 -6.5358 1.0264 20 6 4.8570 -1.4869 -0.0068 21 6 5.5827 -1.1952 1.3179 22 7 6.2833 0.0696 1.2492 23 6 5.5211 1.2974 1.3254 24 6 4.7830 1.5656 0.0032 25 1 -0.3633 0.0686 -1.0254 26 1 -0.3633 -0.9224 0.4533 27 1 -0.3634 0.8537 0.5721 28 1 1.9287 -4.1960 -1.3192 29 1 2.0601 -2.6213 -2.1386 30 1 3.4440 -3.2670 -1.2242 31 1 3.4908 -3.2535 1.1730 32 1 2.1152 -2.6585 2.1333 33 1 0.7497 -4.5821 1.3691 34 1 2.1253 -5.1772 0.4090 35 1 2.2258 -8.1547 4.0470 36 1 5.4861 -1.1961 -0.8480 37 1 4.6129 -2.5472 -0.0721 38 1 6.2992 -1.9920 1.5178 39 1 4.8528 -1.1578 2.1265 40 1 7.0619 0.0869 1.8906 41 1 4.7932 1.2180 2.1327 42 1 6.1971 2.1267 1.5334 43 1 4.4898 2.6139 -0.0535 44 1 5.4251 1.3113 -0.8400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = 41.949873 kcal Electronic energy + Delta-G solvation = -22613.503002 eV Core-core repulsion = 19565.829590 eV Total energy + Delta-G solvation = -3047.673413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.19652 -37.32566 -36.53072 -33.29203 -32.24924 -32.01808 -30.86245 -29.27106 -28.98112 -25.82876 -24.58892 -24.12165 -22.39158 -20.74141 -20.23107 -19.87181 -18.74907 -17.06220 -16.47905 -15.94561 -15.38228 -14.87424 -14.73823 -14.56058 -14.17433 -13.65800 -13.29139 -13.25868 -13.03682 -12.90530 -12.68299 -12.66571 -12.14694 -12.04972 -11.84806 -11.68262 -11.48456 -11.40444 -11.07281 -10.99957 -10.96118 -10.67543 -10.24467 -10.02188 -9.89245 -9.54292 -9.36388 -9.05759 -8.64716 -8.32517 -7.69362 -6.14850 -4.14254 2.30724 3.02002 3.21095 3.29678 3.30484 3.31894 4.15468 4.34189 4.54511 4.75071 4.80223 4.99913 5.13597 5.18910 5.24297 5.32209 5.36259 5.39340 5.41031 5.53416 5.56999 5.60180 5.63411 5.79107 5.81103 5.82142 5.93048 5.96007 6.10694 6.15187 6.19222 6.24198 6.29700 6.41705 6.62851 6.79382 7.06704 7.07791 7.20825 7.36373 7.43659 7.54210 7.65853 8.39863 8.41314 8.88989 9.46398 10.98454 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.005192 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.056059 B = 5391.917589 C = 6253.170592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.185 3.815 3 N -0.488 5.488 4 C -0.013 4.013 5 C -0.012 4.012 6 N -0.432 5.432 7 C 0.122 3.878 8 H 0.097 0.903 9 C -0.161 4.161 10 C -0.110 4.110 11 C -0.009 4.009 12 C -0.523 4.523 13 H 0.071 0.929 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.047 4.047 21 C 0.088 3.912 22 N -0.726 5.726 23 C 0.088 3.912 24 C -0.027 4.027 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.264 0.736 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.348 0.652 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 13.544 -9.169 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 N -0.208 5.208 4 C -0.143 4.143 5 C -0.129 4.129 6 N -0.113 5.113 7 C 0.020 3.980 8 H 0.115 0.885 9 C -0.219 4.219 10 C -0.148 4.148 11 C -0.047 4.047 12 C -0.561 4.561 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.086 4.086 21 C -0.041 4.041 22 N -0.360 5.360 23 C -0.041 4.041 24 C -0.066 4.066 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.168 0.832 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.118 14.022 -9.664 17.161 hybrid contribution -0.629 -1.520 0.453 1.707 sum 1.489 12.501 -9.211 15.599 Atomic orbital electron populations 1.20115 0.85513 1.03617 1.03052 1.23228 0.95330 0.81396 1.07586 1.69980 1.01672 1.28298 1.20803 1.20443 0.92800 0.91321 1.09737 1.20921 0.85997 0.95090 1.10866 1.45346 1.05751 1.07494 1.52679 1.21824 1.00447 0.77298 0.98468 0.88495 1.22236 1.02647 1.01291 0.95719 1.21941 1.01087 0.97847 0.93975 1.19578 0.96226 0.91017 0.97847 1.21038 1.28516 0.98078 1.08434 0.91069 1.25012 0.95850 0.97364 0.95059 1.69905 1.44524 1.12813 1.26643 0.86805 0.81721 0.79798 0.81121 1.20166 1.21262 1.19054 1.20790 0.90423 0.98451 0.98894 1.21406 0.96789 0.89991 0.95905 1.56016 1.16217 1.01719 1.62081 1.21408 0.95764 0.90509 0.96464 1.20340 0.90897 0.97508 0.97892 0.90670 0.90885 0.89666 0.89976 0.92677 0.91413 0.91420 0.92220 0.96542 0.96475 0.92604 0.89385 0.89807 0.90310 0.94943 0.83191 0.95371 0.90989 0.90594 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.13 36.01 0.36 -0.42 16 2 C 0.19 2.97 7.92 -154.72 -1.22 1.74 16 3 N -0.49 -8.48 11.27 -6.74 -0.08 -8.55 16 4 C -0.01 -0.21 6.30 -82.67 -0.52 -0.73 16 5 C -0.01 -0.19 5.52 -81.61 -0.45 -0.64 16 6 N -0.43 -6.89 2.60 -102.04 -0.27 -7.15 16 7 C 0.12 1.88 2.84 -67.93 -0.19 1.69 16 8 H 0.10 1.41 6.61 -51.93 -0.34 1.06 16 9 C -0.16 -2.24 8.73 37.16 0.32 -1.91 16 10 C -0.11 -2.06 4.55 -26.73 -0.12 -2.18 16 11 C -0.01 -0.20 3.80 -27.88 -0.11 -0.30 16 12 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 13 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 16 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 20 C -0.05 -0.64 5.05 -26.90 -0.14 -0.78 16 21 C 0.09 1.16 6.28 -4.54 -0.03 1.14 16 22 N -0.73 -8.29 6.03 -116.03 -0.70 -8.99 16 23 C 0.09 1.03 6.26 -4.59 -0.03 1.00 16 24 C -0.03 -0.35 6.13 -26.86 -0.16 -0.52 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.83 6.92 -51.92 -0.36 0.47 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.13 6.90 -51.93 -0.36 0.77 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.93 5.77 -51.93 -0.30 0.63 16 31 H 0.07 1.26 5.69 -51.93 -0.30 0.97 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.02 0.36 6.15 -51.93 -0.32 0.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.18 4.10 -51.93 -0.21 0.97 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.51 7.89 -51.93 -0.41 0.10 16 40 H 0.35 3.26 8.87 -39.30 -0.35 2.91 16 41 H 0.03 0.39 7.89 -51.93 -0.41 -0.02 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -31.55 334.26 -9.74 -41.29 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.12 Total: 3.21 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.72 Total: -14.67 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.27 Total: -50.98 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.55 -9.74 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.241 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds