Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30890 * 125.61928 * 2 1 4 4 C 1.33513 * 108.92545 * 179.97438 * 3 2 1 5 5 C 1.34231 * 108.18327 * 0.08035 * 4 3 2 6 6 N 1.35442 * 125.62866 * 179.97438 * 2 1 3 7 7 C 1.46500 * 126.60996 * 359.97438 * 6 2 1 8 8 H 1.08994 * 109.47432 * 358.89503 * 7 6 2 9 9 C 1.52997 * 109.47317 * 118.90278 * 7 6 2 10 10 C 1.53005 * 109.46661 * 238.90035 * 7 6 2 11 11 C 1.52996 * 109.46983 * 174.99907 * 10 7 6 12 12 C 1.50708 * 109.46882 * 179.97438 * 11 10 7 13 13 H 1.07995 * 120.00338 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99760 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00102 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00278 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47251 * 89.99744 * 16 14 12 18 18 H 1.48502 * 109.47371 * 209.99668 * 16 14 12 19 19 H 1.48505 * 109.46829 * 329.99989 * 16 14 12 20 20 C 1.51808 * 124.43324 * 179.72298 * 5 4 3 21 21 C 1.53841 * 106.82066 * 64.34394 * 20 5 4 22 22 N 1.44747 * 110.67790 * 281.00851 * 21 20 5 23 23 C 1.44716 * 118.94333 * 74.91088 * 22 21 20 24 24 C 1.51931 * 127.67308 * 180.11315 * 4 3 2 25 25 H 1.08999 * 109.47081 * 86.17258 * 1 2 3 26 26 H 1.09009 * 109.46831 * 206.17025 * 1 2 3 27 27 H 1.09000 * 109.47319 * 326.16936 * 1 2 3 28 28 H 1.09004 * 109.47146 * 186.61728 * 9 7 6 29 29 H 1.08997 * 109.47197 * 306.61991 * 9 7 6 30 30 H 1.09001 * 109.47416 * 66.62031 * 9 7 6 31 31 H 1.09000 * 109.47225 * 295.00116 * 10 7 6 32 32 H 1.09005 * 109.47441 * 54.99839 * 10 7 6 33 33 H 1.09000 * 109.47310 * 300.00156 * 11 10 7 34 34 H 1.08997 * 109.47275 * 60.00564 * 11 10 7 35 35 H 0.97004 * 120.00112 * 180.02562 * 15 14 12 36 36 H 1.08992 * 110.01935 * 304.99848 * 20 5 4 37 37 H 1.09002 * 109.95360 * 183.64958 * 20 5 4 38 38 H 1.08997 * 109.23065 * 160.71351 * 21 20 5 39 39 H 1.08999 * 109.23095 * 41.30442 * 21 20 5 40 40 H 1.00893 * 110.99968 * 205.52434 * 22 21 20 41 41 H 1.08997 * 109.20367 * 45.30310 * 23 22 21 42 42 H 1.08999 * 109.20549 * 164.60916 * 23 22 21 43 43 H 1.08998 * 109.97561 * 356.74810 * 24 4 3 44 44 H 1.08995 * 109.97327 * 235.41507 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2693 1.0640 0.0000 4 6 3.5482 0.6805 0.0006 5 6 3.5830 -0.6614 -0.0009 6 7 2.2960 -1.1009 0.0005 7 6 1.8491 -2.4961 0.0016 8 1 0.7598 -2.5287 0.0219 9 6 2.3570 -3.1954 -1.2608 10 6 2.4036 -3.2081 1.2372 11 6 1.8369 -4.6276 1.3050 12 6 2.3836 -5.3291 2.5216 13 1 3.0665 -4.8139 3.1808 14 6 2.0110 -6.6284 2.7938 15 7 2.4876 -7.2404 3.8557 16 14 0.8292 -7.5194 1.6541 17 1 1.5976 -8.2239 0.5966 18 1 0.0397 -8.5068 2.4333 19 1 -0.0894 -6.5358 1.0264 20 6 4.8570 -1.4869 -0.0068 21 6 5.5827 -1.1952 1.3179 22 7 6.2833 0.0696 1.2492 23 6 5.5211 1.2974 1.3254 24 6 4.7830 1.5656 0.0032 25 1 -0.3633 0.0686 -1.0254 26 1 -0.3633 -0.9224 0.4533 27 1 -0.3634 0.8537 0.5721 28 1 1.9287 -4.1960 -1.3192 29 1 2.0601 -2.6213 -2.1386 30 1 3.4440 -3.2670 -1.2242 31 1 3.4908 -3.2535 1.1730 32 1 2.1152 -2.6585 2.1333 33 1 0.7497 -4.5821 1.3691 34 1 2.1253 -5.1772 0.4090 35 1 2.2258 -8.1547 4.0470 36 1 5.4861 -1.1961 -0.8480 37 1 4.6129 -2.5472 -0.0721 38 1 6.2992 -1.9920 1.5178 39 1 4.8528 -1.1578 2.1265 40 1 7.0619 0.0869 1.8906 41 1 4.7932 1.2180 2.1327 42 1 6.1971 2.1267 1.5334 43 1 4.4898 2.6139 -0.0535 44 1 5.4251 1.3113 -0.8400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = 22.187326 kcal Electronic energy + Delta-G solvation = -22614.359971 eV Core-core repulsion = 19565.829590 eV Total energy + Delta-G solvation = -3048.530381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.38117 -38.38008 -37.87924 -35.14403 -33.48540 -33.28207 -32.24398 -30.51695 -30.14162 -27.44159 -25.78002 -25.20479 -23.92185 -21.92570 -21.63188 -21.09368 -19.98841 -18.97871 -17.68346 -17.06415 -16.58367 -16.30874 -16.07308 -15.90048 -15.57150 -14.91243 -14.80981 -14.46523 -14.34628 -14.13195 -13.94891 -13.70497 -13.43451 -13.29220 -13.07258 -12.95629 -12.88314 -12.62148 -12.42816 -12.13769 -12.04264 -11.97297 -11.92564 -11.79523 -11.53899 -11.35481 -10.81031 -10.75843 -10.37014 -9.34945 -8.84738 -8.30366 -6.35848 1.11191 1.36847 1.39124 1.50005 1.83196 2.12345 2.35470 3.05476 3.19221 3.48501 3.56037 3.63214 3.88224 3.95406 4.07642 4.22907 4.27156 4.30958 4.37440 4.46288 4.50951 4.55613 4.57817 4.66873 4.70041 4.73492 4.78744 4.81655 4.91420 4.94889 5.02477 5.06007 5.15134 5.18226 5.25433 5.38548 5.46148 5.60968 5.63420 5.91345 6.23502 6.33471 6.36622 6.61616 6.71947 7.19654 7.28840 8.86605 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019782 B = 0.005192 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.056059 B = 5391.917589 C = 6253.170592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.175 3.825 3 N -0.517 5.517 4 C -0.030 4.030 5 C -0.027 4.027 6 N -0.437 5.437 7 C 0.129 3.871 8 H 0.113 0.887 9 C -0.157 4.157 10 C -0.098 4.098 11 C -0.003 4.003 12 C -0.533 4.533 13 H 0.025 0.975 14 C 0.005 3.995 15 N -0.953 5.953 16 Si 0.950 3.050 17 H -0.263 1.263 18 H -0.289 1.289 19 H -0.239 1.239 20 C -0.041 4.041 21 C 0.093 3.907 22 N -0.718 5.718 23 C 0.093 3.907 24 C -0.025 4.025 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.090 0.910 39 H -0.001 1.001 40 H 0.361 0.639 41 H 0.001 0.999 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 13.817 -11.604 18.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 N -0.237 5.237 4 C -0.159 4.159 5 C -0.143 4.143 6 N -0.119 5.119 7 C 0.027 3.973 8 H 0.130 0.870 9 C -0.215 4.215 10 C -0.136 4.136 11 C -0.041 4.041 12 C -0.571 4.571 13 H 0.043 0.957 14 C -0.192 4.192 15 N -0.593 5.593 16 Si 0.773 3.227 17 H -0.187 1.187 18 H -0.215 1.215 19 H -0.162 1.162 20 C -0.080 4.080 21 C -0.037 4.037 22 N -0.353 5.353 23 C -0.037 4.037 24 C -0.064 4.064 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.018 0.982 40 H 0.183 0.817 41 H 0.019 0.981 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.380 14.326 -12.106 18.807 hybrid contribution -0.323 -1.526 1.317 2.042 sum 1.057 12.800 -10.790 16.774 Atomic orbital electron populations 1.20267 0.83061 1.04310 1.04544 1.23984 0.96854 0.81117 1.06603 1.69994 1.02467 1.29198 1.22026 1.21002 0.93404 0.92092 1.09421 1.21265 0.86573 0.95457 1.10999 1.45402 1.05935 1.07568 1.52991 1.21716 1.01151 0.77057 0.97410 0.86959 1.22213 1.02595 1.01527 0.95132 1.21700 1.00728 0.96272 0.94902 1.19490 0.96405 0.92341 0.95845 1.21396 1.27672 0.98430 1.09638 0.95709 1.26038 0.97958 0.98367 0.96827 1.70079 1.46675 1.13415 1.29168 0.85662 0.79459 0.78699 0.78896 1.18737 1.21481 1.16177 1.20792 0.89937 0.97845 0.99403 1.21327 0.96349 0.91388 0.94647 1.56021 1.16123 1.00932 1.62272 1.21403 0.95735 0.91546 0.94985 1.20427 0.89947 0.97338 0.98656 0.88669 0.90055 0.89088 0.89331 0.91229 0.91572 0.92031 0.94698 0.95679 0.94610 0.92511 0.88180 0.90332 0.89177 0.98250 0.81674 0.98104 0.87910 0.90023 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.41 10.13 71.24 0.72 -0.69 16 2 C 0.18 5.43 7.92 137.89 1.09 6.52 16 3 N -0.52 -17.69 11.27 -175.24 -1.97 -19.66 16 4 C -0.03 -0.94 6.30 41.78 0.26 -0.68 16 5 C -0.03 -0.83 5.52 41.35 0.23 -0.61 16 6 N -0.44 -13.54 2.60 -476.75 -1.24 -14.78 16 7 C 0.13 3.76 2.84 44.99 0.13 3.89 16 8 H 0.11 2.95 6.61 -2.39 -0.02 2.93 16 9 C -0.16 -3.93 8.73 71.98 0.63 -3.31 16 10 C -0.10 -3.64 4.55 30.59 0.14 -3.50 16 11 C 0.00 -0.13 3.80 29.85 0.11 -0.01 16 12 C -0.53 -29.71 9.66 25.60 0.25 -29.46 16 13 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 14 C 0.00 0.27 5.47 84.65 0.46 0.74 16 15 N -0.95 -58.82 13.96 21.45 0.30 -58.52 16 16 Si 0.95 41.82 27.47 68.60 1.88 43.70 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 20 C -0.04 -1.10 5.05 30.49 0.15 -0.95 16 21 C 0.09 2.44 6.28 86.99 0.55 2.99 16 22 N -0.72 -15.64 6.03 -521.00 -3.14 -18.78 16 23 C 0.09 2.08 6.26 86.98 0.54 2.63 16 24 C -0.02 -0.61 6.13 30.51 0.19 -0.42 16 25 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 1.65 6.92 -2.38 -0.02 1.63 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.11 6.90 -2.38 -0.02 2.10 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.68 5.77 -2.39 -0.01 1.66 16 31 H 0.06 2.34 5.69 -2.39 -0.01 2.33 16 32 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 34 H 0.04 1.42 6.15 -2.39 -0.01 1.40 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 2.18 4.10 -2.39 -0.01 2.17 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.00 -0.03 7.89 -2.39 -0.02 -0.04 16 40 H 0.36 6.24 8.87 -89.70 -0.80 5.45 16 41 H 0.00 0.02 7.89 -2.39 -0.02 0.00 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -70.04 334.26 1.43 -68.61 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.15 Total: 22.30 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 5.45 Total: -22.87 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -6.06 Total: -111.75 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.70 kcal Total: -70.04 1.43 -68.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.801 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds