Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30501 * 125.65335 * 2 1 4 4 C 1.34127 * 109.25606 * 180.29250 * 3 2 1 5 5 C 1.34669 * 108.01973 * 359.72260 * 4 3 2 6 6 N 1.35046 * 125.64780 * 179.82518 * 2 1 3 7 7 C 1.46498 * 126.39504 * 359.97356 * 6 2 1 8 8 C 1.53000 * 109.47108 * 84.72158 * 7 6 2 9 9 N 1.46902 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.46906 * 110.99927 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46907 * 274.99822 * 10 9 8 12 12 C 1.52996 * 109.47165 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46969 * 60.00104 * 12 11 10 14 14 C 1.50706 * 109.47305 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99823 * 119.99738 * 14 13 12 16 16 C 1.37879 * 119.99661 * 299.99958 * 14 13 12 17 17 N 1.31515 * 120.00032 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47389 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47216 * 120.00058 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99930 * 18 16 14 22 22 C 1.52997 * 109.47092 * 299.99940 * 13 12 11 23 23 C 1.52993 * 109.47378 * 154.99917 * 10 9 8 24 24 H 1.09001 * 109.46900 * 270.17510 * 1 2 3 25 25 H 1.08999 * 109.46832 * 30.17512 * 1 2 3 26 26 H 1.08994 * 109.46983 * 150.17409 * 1 2 3 27 27 H 1.07997 * 125.98763 * 179.72814 * 4 3 2 28 28 H 1.08006 * 126.58856 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47414 * 324.71495 * 7 6 2 30 30 H 1.09008 * 109.46863 * 204.71150 * 7 6 2 31 31 H 1.08994 * 109.47524 * 59.99405 * 8 7 6 32 32 H 1.09008 * 109.46436 * 299.99254 * 8 7 6 33 33 H 1.00902 * 111.00001 * 303.94225 * 9 8 7 34 34 H 1.09000 * 109.47033 * 34.99658 * 10 9 8 35 35 H 1.09000 * 109.47140 * 299.99770 * 11 10 9 36 36 H 1.09001 * 109.47375 * 59.99788 * 11 10 9 37 37 H 1.09004 * 109.47552 * 300.00012 * 12 11 10 38 38 H 1.09004 * 109.47298 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.47312 * 60.00061 * 13 12 11 40 40 H 0.97003 * 119.99476 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47140 * 300.00226 * 22 13 12 42 42 H 1.09001 * 109.47375 * 180.02562 * 22 13 12 43 43 H 1.09004 * 109.46862 * 299.99897 * 23 10 9 44 44 H 1.09004 * 109.46998 * 59.99419 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0065 5 6 3.5926 -0.6644 -0.0044 6 7 2.2941 -1.0974 0.0033 7 6 1.8424 -2.4910 0.0081 8 6 1.5584 -2.9400 -1.4267 9 7 1.1061 -4.3377 -1.4219 10 6 0.8227 -4.8039 -2.7859 11 6 -0.6048 -4.4120 -3.1724 12 6 -0.8998 -4.8970 -4.5932 13 6 -0.7549 -6.4190 -4.6529 14 6 -1.0448 -6.8967 -6.0525 15 1 -0.2869 -7.4268 -6.6100 16 6 -2.2778 -6.6570 -6.6212 17 7 -3.2009 -6.0118 -5.9420 18 14 -2.6370 -7.2485 -8.3563 19 1 -1.4417 -7.9418 -8.9003 20 1 -3.7862 -8.1886 -8.3308 21 1 -2.9683 -6.0849 -9.2173 22 6 0.6726 -6.8109 -4.2663 23 6 0.9674 -6.3258 -2.8450 24 1 -0.3633 0.0031 1.0277 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8915 -0.5111 27 1 4.4099 1.3409 -0.0122 28 1 4.4777 -1.2833 -0.0087 29 1 0.9327 -2.5761 0.6024 30 1 2.6187 -3.1230 0.4396 31 1 2.4682 -2.8549 -2.0209 32 1 0.7821 -2.3080 -1.8581 33 1 1.7814 -4.9347 -0.9684 34 1 1.5262 -4.3447 -3.4803 35 1 -1.3084 -4.8712 -2.4780 36 1 -0.7080 -3.3277 -3.1303 37 1 -0.1962 -4.4375 -5.2875 38 1 -1.9170 -4.6182 -4.8685 39 1 -1.4585 -6.8785 -3.9587 40 1 -4.0682 -5.8428 -6.3423 41 1 1.3762 -6.3514 -4.9605 42 1 0.7760 -7.8951 -4.3093 43 1 1.9845 -6.6050 -2.5696 44 1 0.2639 -6.7850 -2.1505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = 37.029145 kcal Electronic energy + Delta-G solvation = -21453.121743 eV Core-core repulsion = 18405.234951 eV Total energy + Delta-G solvation = -3047.886792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21828 -38.38996 -35.89992 -33.83881 -32.21282 -31.85089 -29.81495 -29.51994 -27.36222 -26.76136 -24.30468 -22.90661 -21.66371 -21.43796 -20.50866 -19.79204 -18.75289 -17.19692 -16.34612 -16.08784 -15.56658 -14.83700 -14.61441 -14.55987 -14.19508 -13.83708 -13.48751 -13.11755 -13.10780 -13.01494 -12.83061 -12.49456 -12.36591 -12.07378 -11.79286 -11.45160 -11.30323 -11.02867 -10.73257 -10.54567 -10.44657 -10.22102 -10.08279 -9.88301 -9.72308 -9.37501 -8.95527 -8.70677 -8.48014 -8.36980 -8.30116 -5.98049 -4.04177 1.89059 2.56818 3.02998 3.28827 3.37240 3.40724 4.15788 4.38098 4.39923 4.44015 4.67881 4.76625 5.02478 5.13780 5.19526 5.30205 5.33546 5.38193 5.42910 5.49743 5.57685 5.68410 5.79290 5.81180 6.05995 6.17834 6.23057 6.33319 6.36238 6.50396 6.63089 6.64761 6.70257 6.87453 7.02968 7.08498 7.15309 7.29275 7.39261 7.52179 7.75755 7.98905 8.01850 8.16132 8.47254 9.00180 9.60572 11.07483 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.003156 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.287944 B = 8869.881433 C = 9312.407689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.210 3.790 3 N -0.496 5.496 4 C -0.031 4.031 5 C -0.061 4.061 6 N -0.452 5.452 7 C 0.105 3.895 8 C 0.046 3.954 9 N -0.684 5.684 10 C 0.093 3.907 11 C -0.101 4.101 12 C -0.110 4.110 13 C 0.049 3.951 14 C -0.513 4.513 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.106 4.106 23 C -0.115 4.115 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.335 0.665 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.093 0.907 39 H 0.026 0.974 40 H 0.259 0.741 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.500 7.274 13.030 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 N -0.216 5.216 4 C -0.179 4.179 5 C -0.194 4.194 6 N -0.136 5.136 7 C -0.018 4.018 8 C -0.084 4.084 9 N -0.315 5.315 10 C -0.015 4.015 11 C -0.139 4.139 12 C -0.149 4.149 13 C 0.030 3.970 14 C -0.551 4.551 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.153 4.153 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.341 8.154 13.152 18.075 hybrid contribution 1.199 -1.235 -1.348 2.186 sum 10.540 6.919 11.804 17.271 Atomic orbital electron populations 1.20247 0.84857 1.04470 1.03533 1.23368 0.95817 0.81293 1.04791 1.70252 1.02264 1.28400 1.20660 1.22263 0.94827 0.92764 1.07999 1.22690 0.87121 0.96912 1.12673 1.45412 1.06469 1.07450 1.54243 1.21874 1.02188 0.78737 0.99010 1.22268 0.99725 0.92034 0.94396 1.60540 1.48816 1.01357 1.20783 1.21640 0.98286 0.95390 0.86226 1.21604 0.94021 0.98633 0.99667 1.21632 1.03162 0.98610 0.91447 1.18655 0.90019 0.92142 0.96140 1.21272 0.98383 1.35745 0.99747 0.92834 1.24968 0.96322 0.95204 0.97533 1.69886 1.04923 1.41192 1.36850 0.86603 0.78212 0.78523 0.85053 1.19888 1.21074 1.21089 1.21610 1.00582 0.99280 0.92969 1.21728 0.99637 0.94054 0.99897 0.90217 0.89163 0.90286 0.81494 0.81129 0.87959 0.89165 0.94848 0.90067 0.84728 0.94418 0.92149 0.94388 0.95146 0.88859 0.95589 0.93138 0.93596 0.93243 0.93958 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.04 36.01 0.36 -0.32 16 2 C 0.21 2.55 7.90 -155.41 -1.23 1.32 16 3 N -0.50 -6.91 11.25 -10.81 -0.12 -7.03 16 4 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 5 C -0.06 -0.63 11.58 -16.56 -0.19 -0.82 16 6 N -0.45 -4.85 2.75 -113.90 -0.31 -5.16 16 7 C 0.10 0.93 5.94 -4.04 -0.02 0.91 16 8 C 0.05 0.51 5.81 -3.82 -0.02 0.49 16 9 N -0.68 -8.41 6.31 -106.72 -0.67 -9.09 16 10 C 0.09 1.46 2.49 -67.71 -0.17 1.30 16 11 C -0.10 -1.88 5.42 -26.73 -0.15 -2.03 16 12 C -0.11 -2.52 4.98 -26.73 -0.13 -2.65 16 13 C 0.05 1.18 2.10 -91.77 -0.19 0.98 16 14 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.11 -2.12 5.14 -26.71 -0.14 -2.25 16 23 C -0.12 -1.87 5.20 -26.71 -0.14 -2.00 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.70 7.33 -51.93 -0.38 0.32 16 27 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 29 H 0.10 0.86 7.94 -51.93 -0.41 0.44 16 30 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.08 1.03 6.93 -51.92 -0.36 0.67 16 33 H 0.34 3.51 8.35 -39.29 -0.33 3.18 16 34 H 0.04 0.63 7.80 -51.93 -0.40 0.22 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -30.14 348.31 -10.49 -40.63 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.62 Total: 2.02 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -2.62 Total: -18.27 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.48 Total: -45.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.14 -10.49 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.663 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds