Wall clock time and date at job start Mon Mar 30 2020 02:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30501 * 125.65335 * 2 1 4 4 C 1.34127 * 109.25606 * 180.29250 * 3 2 1 5 5 C 1.34669 * 108.01973 * 359.72260 * 4 3 2 6 6 N 1.35046 * 125.64780 * 179.82518 * 2 1 3 7 7 C 1.46498 * 126.39504 * 359.97356 * 6 2 1 8 8 C 1.53000 * 109.47108 * 84.72158 * 7 6 2 9 9 N 1.46902 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.46906 * 110.99927 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46907 * 274.99822 * 10 9 8 12 12 C 1.52996 * 109.47165 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46969 * 60.00104 * 12 11 10 14 14 C 1.50706 * 109.47305 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99823 * 119.99738 * 14 13 12 16 16 C 1.37879 * 119.99661 * 299.99958 * 14 13 12 17 17 N 1.31515 * 120.00032 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47389 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47216 * 120.00058 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99930 * 18 16 14 22 22 C 1.52997 * 109.47092 * 299.99940 * 13 12 11 23 23 C 1.52993 * 109.47378 * 154.99917 * 10 9 8 24 24 H 1.09001 * 109.46900 * 270.17510 * 1 2 3 25 25 H 1.08999 * 109.46832 * 30.17512 * 1 2 3 26 26 H 1.08994 * 109.46983 * 150.17409 * 1 2 3 27 27 H 1.07997 * 125.98763 * 179.72814 * 4 3 2 28 28 H 1.08006 * 126.58856 * 179.97438 * 5 4 3 29 29 H 1.08994 * 109.47414 * 324.71495 * 7 6 2 30 30 H 1.09008 * 109.46863 * 204.71150 * 7 6 2 31 31 H 1.08994 * 109.47524 * 59.99405 * 8 7 6 32 32 H 1.09008 * 109.46436 * 299.99254 * 8 7 6 33 33 H 1.00902 * 111.00001 * 303.94225 * 9 8 7 34 34 H 1.09000 * 109.47033 * 34.99658 * 10 9 8 35 35 H 1.09000 * 109.47140 * 299.99770 * 11 10 9 36 36 H 1.09001 * 109.47375 * 59.99788 * 11 10 9 37 37 H 1.09004 * 109.47552 * 300.00012 * 12 11 10 38 38 H 1.09004 * 109.47298 * 179.97438 * 12 11 10 39 39 H 1.09000 * 109.47312 * 60.00061 * 13 12 11 40 40 H 0.97003 * 119.99476 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47140 * 300.00226 * 22 13 12 42 42 H 1.09001 * 109.47375 * 180.02562 * 22 13 12 43 43 H 1.09004 * 109.46862 * 299.99897 * 23 10 9 44 44 H 1.09004 * 109.46998 * 59.99419 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6818 -0.0065 5 6 3.5926 -0.6644 -0.0044 6 7 2.2941 -1.0974 0.0033 7 6 1.8424 -2.4910 0.0081 8 6 1.5584 -2.9400 -1.4267 9 7 1.1061 -4.3377 -1.4219 10 6 0.8227 -4.8039 -2.7859 11 6 -0.6048 -4.4120 -3.1724 12 6 -0.8998 -4.8970 -4.5932 13 6 -0.7549 -6.4190 -4.6529 14 6 -1.0448 -6.8967 -6.0525 15 1 -0.2869 -7.4268 -6.6100 16 6 -2.2778 -6.6570 -6.6212 17 7 -3.2009 -6.0118 -5.9420 18 14 -2.6370 -7.2485 -8.3563 19 1 -1.4417 -7.9418 -8.9003 20 1 -3.7862 -8.1886 -8.3308 21 1 -2.9683 -6.0849 -9.2173 22 6 0.6726 -6.8109 -4.2663 23 6 0.9674 -6.3258 -2.8450 24 1 -0.3633 0.0031 1.0277 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8915 -0.5111 27 1 4.4099 1.3409 -0.0122 28 1 4.4777 -1.2833 -0.0087 29 1 0.9327 -2.5761 0.6024 30 1 2.6187 -3.1230 0.4396 31 1 2.4682 -2.8549 -2.0209 32 1 0.7821 -2.3080 -1.8581 33 1 1.7814 -4.9347 -0.9684 34 1 1.5262 -4.3447 -3.4803 35 1 -1.3084 -4.8712 -2.4780 36 1 -0.7080 -3.3277 -3.1303 37 1 -0.1962 -4.4375 -5.2875 38 1 -1.9170 -4.6182 -4.8685 39 1 -1.4585 -6.8785 -3.9587 40 1 -4.0682 -5.8428 -6.3423 41 1 1.3762 -6.3514 -4.9605 42 1 0.7760 -7.8951 -4.3093 43 1 1.9845 -6.6050 -2.5696 44 1 0.2639 -6.7850 -2.1505 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:33 Heat of formation + Delta-G solvation = 19.896519 kcal Electronic energy + Delta-G solvation = -21453.864669 eV Core-core repulsion = 18405.234951 eV Total energy + Delta-G solvation = -3048.629718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.02741 -39.79140 -37.09069 -35.16659 -33.84743 -32.61650 -31.40309 -30.91119 -28.54375 -27.64777 -26.03449 -24.00498 -23.09022 -22.29352 -21.99665 -20.70523 -20.31812 -18.39910 -17.99401 -17.07439 -16.59444 -16.45433 -15.83782 -15.54654 -15.40482 -14.87185 -14.73358 -14.67600 -14.24383 -14.08800 -13.88142 -13.71892 -13.30839 -13.22241 -13.07191 -12.95247 -12.81076 -12.54814 -12.46037 -12.13138 -12.03533 -11.85323 -11.69598 -11.17524 -10.95357 -10.76228 -10.58896 -10.51122 -10.35517 -9.45853 -9.27486 -8.06919 -6.20677 1.08568 1.38830 1.41235 1.51792 1.80438 2.17435 2.43423 3.15294 3.20467 3.62862 3.69628 3.87280 3.95075 3.98474 4.13384 4.31929 4.39583 4.42632 4.48290 4.58890 4.66065 4.69728 4.71266 4.77388 4.84902 4.86663 4.89115 4.97317 5.00149 5.08511 5.18599 5.31111 5.38675 5.42668 5.50640 5.61933 5.70868 5.85892 5.98726 6.06054 6.21070 6.26114 6.42994 6.50908 6.92926 7.15907 7.47386 8.96870 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.030091 B = 0.003156 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.287944 B = 8869.881433 C = 9312.407689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.191 3.809 3 N -0.536 5.536 4 C -0.058 4.058 5 C -0.053 4.053 6 N -0.453 5.453 7 C 0.111 3.889 8 C 0.053 3.947 9 N -0.677 5.677 10 C 0.105 3.895 11 C -0.091 4.091 12 C -0.102 4.102 13 C 0.045 3.955 14 C -0.535 4.535 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.916 5.916 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.101 4.101 23 C -0.106 4.106 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.183 0.817 28 H 0.204 0.796 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.353 0.647 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.021 0.979 38 H 0.056 0.944 39 H -0.006 1.006 40 H 0.259 0.741 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 6.633 13.995 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 N -0.256 5.256 4 C -0.205 4.205 5 C -0.186 4.186 6 N -0.136 5.136 7 C -0.011 4.011 8 C -0.078 4.078 9 N -0.310 5.310 10 C -0.005 4.005 11 C -0.130 4.130 12 C -0.141 4.141 13 C 0.027 3.973 14 C -0.573 4.573 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.139 4.139 23 C -0.144 4.144 24 H 0.112 0.888 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.200 0.800 28 H 0.221 0.779 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.173 0.827 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.012 0.988 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.138 7.502 14.133 19.495 hybrid contribution 0.643 -1.027 -1.656 2.052 sum 11.781 6.475 12.476 18.341 Atomic orbital electron populations 1.20296 0.83634 1.04468 1.04458 1.23773 0.96764 0.81594 1.04973 1.70206 1.03589 1.29871 1.21971 1.22696 0.94712 0.94104 1.08963 1.23212 0.87832 0.96828 1.10755 1.45539 1.06534 1.07785 1.53779 1.21902 1.03582 0.78082 0.97507 1.22182 0.98861 0.90823 0.95906 1.60317 1.49960 1.02285 1.18417 1.21322 0.95847 0.95157 0.88149 1.21424 0.96208 0.98854 0.96489 1.21412 1.00656 0.97929 0.94096 1.18631 0.92081 0.92556 0.94075 1.21685 0.98510 1.35789 1.01300 0.93231 1.25731 0.96321 0.95438 1.01238 1.70028 1.05167 1.41998 1.38341 0.85637 0.78122 0.78060 0.80629 1.19217 1.20663 1.20789 1.21476 0.97480 0.99387 0.95585 1.21625 1.01687 0.94082 0.97037 0.88792 0.89495 0.89913 0.79993 0.77930 0.87228 0.86428 0.95024 0.91961 0.82687 0.94758 0.93206 0.93610 0.96036 0.92575 0.98772 0.93183 0.93693 0.93260 0.90286 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.04 71.24 0.72 -0.54 16 2 C 0.19 4.45 7.90 138.13 1.09 5.55 16 3 N -0.54 -14.69 11.25 -188.13 -2.12 -16.81 16 4 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 5 C -0.05 -0.96 11.58 83.09 0.96 0.00 16 6 N -0.45 -8.66 2.75 -514.27 -1.41 -10.08 16 7 C 0.11 1.60 5.94 86.38 0.51 2.11 16 8 C 0.05 1.02 5.81 86.30 0.50 1.52 16 9 N -0.68 -14.47 6.31 -491.56 -3.10 -17.57 16 10 C 0.10 3.07 2.49 44.91 0.11 3.18 16 11 C -0.09 -3.38 5.42 30.59 0.17 -3.22 16 12 C -0.10 -4.80 4.98 30.59 0.15 -4.64 16 13 C 0.04 2.21 2.10 -11.54 -0.02 2.19 16 14 C -0.53 -29.49 8.56 25.60 0.22 -29.27 16 15 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 16 C 0.01 0.62 5.30 84.65 0.45 1.07 16 17 N -0.92 -53.11 11.32 21.45 0.24 -52.87 16 18 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 C -0.10 -3.94 5.14 30.61 0.16 -3.78 16 23 C -0.11 -3.18 5.20 30.61 0.16 -3.02 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.39 7.33 -2.39 -0.02 1.37 16 27 H 0.18 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 29 H 0.11 1.47 7.94 -2.39 -0.02 1.45 16 30 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.03 0.64 8.05 -2.39 -0.02 0.63 16 32 H 0.06 1.47 6.93 -2.38 -0.02 1.45 16 33 H 0.35 5.77 8.35 -89.69 -0.75 5.03 16 34 H 0.03 1.06 7.80 -2.39 -0.02 1.04 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.60 7.45 -2.39 -0.02 1.58 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 3.04 6.07 -2.38 -0.01 3.03 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 1.84 8.12 -2.38 -0.02 1.82 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -67.15 348.31 2.02 -65.14 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.21 Total: 15.52 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 6.16 Total: -29.16 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -6.39 Total: -97.33 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.15 2.02 -65.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.035 kcal (2) G-P(sol) polarization free energy of solvation -67.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds