Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39869 * 125.89994 * 2 1 4 4 C 1.35319 * 107.92199 * 179.86733 * 3 2 1 5 5 C 1.50698 * 126.12548 * 180.14715 * 4 3 2 6 6 N 1.46903 * 109.47093 * 95.29319 * 5 4 3 7 7 C 1.46893 * 111.00189 * 179.97438 * 6 5 4 8 8 C 1.53008 * 109.46834 * 274.99809 * 7 6 5 9 9 C 1.52995 * 109.46900 * 299.99562 * 8 7 6 10 10 C 1.53005 * 109.47372 * 300.00229 * 9 8 7 11 11 C 1.50700 * 109.47091 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99705 * 240.00059 * 11 10 9 13 13 C 1.37881 * 120.00153 * 59.99654 * 11 10 9 14 14 N 1.31515 * 119.99808 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47154 * 60.00134 * 15 13 11 17 17 H 1.48501 * 109.46729 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47391 * 300.00245 * 15 13 11 19 19 C 1.52993 * 109.46973 * 60.00183 * 10 9 8 20 20 C 1.52997 * 109.47513 * 154.99601 * 7 6 5 21 21 N 1.34949 * 107.74072 * 0.38975 * 4 3 2 22 22 C 1.46499 * 126.03244 * 179.74834 * 21 4 3 23 23 N 1.30834 * 125.89652 * 180.31122 * 2 1 3 24 24 H 1.09002 * 109.47152 * 269.71476 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71576 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71557 * 1 2 3 27 27 H 1.08001 * 126.03471 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.46903 * 215.28425 * 5 4 3 29 29 H 1.08994 * 109.47583 * 335.28793 * 5 4 3 30 30 H 1.00897 * 111.00397 * 56.03634 * 6 5 4 31 31 H 1.08999 * 109.47299 * 34.99280 * 7 6 5 32 32 H 1.08994 * 109.47164 * 59.99685 * 8 7 6 33 33 H 1.09003 * 109.46685 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47179 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.47451 * 60.00239 * 9 8 7 36 36 H 1.08996 * 109.46700 * 300.00181 * 10 9 8 37 37 H 0.96996 * 119.99637 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47438 * 179.97438 * 19 10 9 39 39 H 1.08997 * 109.47650 * 59.99692 * 19 10 9 40 40 H 1.08997 * 109.47386 * 179.97438 * 20 7 6 41 41 H 1.08999 * 109.47099 * 299.99705 * 20 7 6 42 42 H 1.08997 * 109.47406 * 270.02735 * 22 21 4 43 43 H 1.09005 * 109.47350 * 30.03326 * 22 21 4 44 44 H 1.09001 * 109.46901 * 150.02966 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7153 0.0030 5 6 4.8351 1.5989 0.0072 6 7 5.3030 1.7810 1.3878 7 6 6.4949 2.6385 1.4309 8 6 7.7438 1.7882 1.1894 9 6 7.8480 0.7153 2.2750 10 6 7.9447 1.3855 3.6470 11 6 8.0479 0.3286 4.7163 12 1 7.2976 0.2689 5.4907 13 6 9.1003 -0.5623 4.7058 14 7 10.0142 -0.4893 3.7629 15 14 9.2285 -1.8719 6.0316 16 1 8.0239 -2.7392 5.9889 17 1 10.4412 -2.6963 5.7972 18 1 9.3228 -1.2209 7.3630 19 6 6.6958 2.2357 3.8885 20 6 6.5916 3.3088 2.8028 21 7 3.6087 -0.6341 -0.0039 22 6 4.7899 -1.5008 -0.0089 23 7 2.2741 -1.0598 -0.0058 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8874 -0.5182 26 1 -0.3633 0.8926 -0.5094 27 1 1.9923 2.1598 -0.0004 28 1 5.6228 1.1330 -0.5848 29 1 4.5833 2.5686 -0.4220 30 1 5.4816 0.8916 1.8294 31 1 6.4207 3.4030 0.6575 32 1 7.6748 1.3108 0.2120 33 1 8.6282 2.4246 1.2209 34 1 8.7379 0.1098 2.1033 35 1 6.9635 0.0789 2.2431 36 1 8.8291 2.0218 3.6789 37 1 10.7547 -1.1158 3.7557 38 1 6.7645 2.7128 4.8661 39 1 5.8114 1.5995 3.8565 40 1 7.4763 3.9447 2.8350 41 1 5.7019 3.9145 2.9748 42 1 5.0827 -1.7101 -1.0377 43 1 5.6094 -1.0011 0.5077 44 1 4.5564 -2.4361 0.4998 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 55.390369 kcal Electronic energy + Delta-G solvation = -22240.003169 eV Core-core repulsion = 19192.912579 eV Total energy + Delta-G solvation = -3047.090589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17686 -38.57380 -34.81096 -33.68318 -32.43495 -30.54094 -29.67997 -29.46768 -28.40680 -25.43384 -24.96913 -24.28894 -21.58338 -20.83222 -20.28446 -19.21939 -18.11714 -16.57858 -16.33978 -15.73592 -15.47151 -14.63060 -14.34955 -14.25042 -13.63983 -13.52755 -13.49678 -13.24997 -12.86399 -12.67302 -12.57655 -12.18603 -12.11941 -12.04809 -11.88067 -11.60078 -11.35142 -11.14855 -10.80611 -10.68603 -10.41499 -10.20034 -10.10862 -9.95982 -9.37922 -9.02788 -8.94070 -8.69228 -8.38956 -8.31115 -8.02509 -6.00161 -4.05989 1.93662 2.59909 2.86542 3.30108 3.34766 3.38254 4.42077 4.47067 4.58450 4.77601 5.02872 5.20396 5.21797 5.28602 5.30301 5.42174 5.50532 5.55767 5.57857 5.61199 5.70593 5.73774 5.88015 5.95046 6.13374 6.18827 6.29649 6.33984 6.44202 6.53563 6.60581 6.78335 6.79120 6.94028 7.09494 7.12992 7.18186 7.35594 7.45966 7.67858 7.72658 7.85034 7.99754 8.11770 8.46484 8.98593 9.58989 11.05083 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.004739 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.515827 B = 5906.473132 C = 6607.708971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.065 3.935 3 C -0.258 4.258 4 C 0.097 3.903 5 C 0.119 3.881 6 N -0.676 5.676 7 C 0.092 3.908 8 C -0.150 4.150 9 C -0.107 4.107 10 C 0.049 3.951 11 C -0.512 4.512 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.108 4.108 20 C -0.103 4.103 21 N -0.368 5.368 22 C 0.097 3.903 23 N -0.300 5.300 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.350 0.650 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.259 0.741 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 3.613 -9.982 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C -0.288 4.288 4 C -0.031 4.031 5 C -0.011 4.011 6 N -0.311 5.311 7 C -0.017 4.017 8 C -0.189 4.189 9 C -0.145 4.145 10 C 0.031 3.969 11 C -0.550 4.550 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.146 4.146 20 C -0.141 4.141 21 N -0.151 5.151 22 C -0.044 4.044 23 N -0.124 5.124 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.162 0.838 28 H 0.058 0.942 29 H 0.112 0.888 30 H 0.173 0.827 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.484 2.659 -9.910 15.400 hybrid contribution 0.983 -0.599 0.375 1.211 sum -10.501 2.059 -9.535 14.333 Atomic orbital electron populations 1.20131 0.86961 1.02864 1.02807 1.22265 0.96769 0.90940 1.00063 1.21044 0.90826 0.99565 1.17359 1.21029 0.97168 0.84150 1.00737 1.20520 0.91005 0.97536 0.92083 1.60773 1.35022 1.21160 1.14126 1.21540 0.87847 0.94359 0.97957 1.22291 0.98075 0.99669 0.98889 1.21604 1.01478 0.96446 0.94980 1.18635 0.92258 0.93638 0.92368 1.21233 1.08639 1.14373 1.10761 0.92870 1.24954 0.95695 0.97559 0.95715 1.69856 1.12797 1.37496 1.32989 0.86734 0.77307 0.81857 0.82559 1.20377 1.21374 1.20306 1.21582 1.00300 0.96608 0.96076 1.21515 1.00080 0.97998 0.94505 1.48390 1.05382 1.04317 1.56990 1.21902 0.84015 0.95339 1.03141 1.77262 0.86370 1.22806 1.25922 0.90677 0.91274 0.90638 0.83754 0.94245 0.88834 0.82714 0.91850 0.94347 0.92039 0.88946 0.95434 0.95814 0.93097 0.93786 0.92953 0.92581 0.92895 0.90901 0.89255 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.45 36.01 0.38 -0.30 16 2 C 0.07 0.91 7.22 -82.41 -0.59 0.32 16 3 C -0.26 -3.58 10.65 -40.01 -0.43 -4.01 16 4 C 0.10 1.40 6.44 -82.26 -0.53 0.87 16 5 C 0.12 1.58 5.42 -4.98 -0.03 1.55 16 6 N -0.68 -10.46 5.75 -107.99 -0.62 -11.08 16 7 C 0.09 1.45 2.85 -67.71 -0.19 1.26 16 8 C -0.15 -2.64 5.52 -26.73 -0.15 -2.78 16 9 C -0.11 -2.32 4.73 -26.73 -0.13 -2.44 16 10 C 0.05 1.17 2.10 -91.77 -0.19 0.98 16 11 C -0.51 -13.75 8.56 -34.44 -0.29 -14.05 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 15 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.11 -2.21 4.90 -26.73 -0.13 -2.34 16 20 C -0.10 -1.75 5.64 -26.73 -0.15 -1.90 16 21 N -0.37 -5.53 4.01 -63.88 -0.26 -5.79 16 22 C 0.10 1.22 11.16 59.85 0.67 1.89 16 23 N -0.30 -4.80 12.58 33.67 0.42 -4.37 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.04 0.50 7.27 -51.93 -0.38 0.13 16 29 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 30 H 0.35 6.09 5.22 -39.29 -0.21 5.89 16 31 H 0.06 0.89 7.80 -51.93 -0.41 0.48 16 32 H 0.04 0.61 7.45 -51.93 -0.39 0.23 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 35 H 0.03 0.58 6.26 -51.93 -0.32 0.26 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.10 7.21 -51.93 -0.37 0.72 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.15 7.45 -51.93 -0.39 0.76 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -29.36 343.78 -8.92 -38.28 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -7.39 Total: 5.26 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -1.87 Total: -19.38 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.17 Total: -45.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.36 -8.92 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.668 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds