Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35313 * 126.13015 * 2 1 4 4 C 1.39871 * 107.92265 * 180.14924 * 3 2 1 5 5 C 1.50700 * 125.89779 * 179.86624 * 4 3 2 6 6 N 1.46897 * 109.47458 * 94.71041 * 5 4 3 7 7 C 1.46894 * 111.00430 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47515 * 205.00020 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47152 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46821 * 119.99784 * 15 13 11 18 18 H 1.48494 * 109.47204 * 240.00116 * 15 13 11 19 19 C 1.53002 * 109.46891 * 299.99597 * 10 9 8 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 10 9 21 21 N 1.30837 * 108.20236 * 359.59403 * 4 3 2 22 22 N 1.34951 * 126.12414 * 179.70424 * 2 1 3 23 23 C 1.46497 * 126.03875 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47097 * 270.29235 * 1 2 3 25 25 H 1.08998 * 109.46635 * 30.29738 * 1 2 3 26 26 H 1.08998 * 109.46745 * 150.29407 * 1 2 3 27 27 H 1.08000 * 126.03812 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46811 * 334.70630 * 5 4 3 29 29 H 1.09001 * 109.46991 * 214.70916 * 5 4 3 30 30 H 1.00902 * 110.99811 * 303.95209 * 6 5 4 31 31 H 1.08998 * 109.46828 * 325.00585 * 7 6 5 32 32 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 34 34 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 36 36 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 37 37 H 0.96991 * 120.00061 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47097 * 180.02562 * 19 10 9 39 39 H 1.09001 * 109.47142 * 300.00176 * 19 10 9 40 40 H 1.09001 * 109.47375 * 59.99908 * 20 19 10 41 41 H 1.09000 * 109.47140 * 179.97438 * 20 19 10 42 42 H 1.09000 * 109.47214 * 270.01962 * 23 22 2 43 43 H 1.09003 * 109.47126 * 30.02320 * 23 22 2 44 44 H 1.09007 * 109.46767 * 150.02380 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6336 0.6559 -0.0035 5 6 4.8544 1.5394 -0.0075 6 7 5.3217 1.7353 1.3713 7 6 6.5136 2.5932 1.4063 8 6 7.3215 2.2924 2.6703 9 6 8.5626 3.1864 2.7070 10 6 8.1334 4.6549 2.7136 11 6 9.3559 5.5354 2.7492 12 1 10.3405 5.0920 2.7650 13 6 9.2173 6.9072 2.7604 14 7 8.0183 7.4472 2.7396 15 14 10.7327 7.9987 2.8052 16 1 11.9524 7.1517 2.8227 17 1 10.7518 8.8685 1.6018 18 1 10.6985 8.8433 4.0261 19 6 7.3255 4.9557 1.4496 20 6 6.0844 4.0618 1.4129 21 7 3.6335 -0.6525 0.0033 22 7 2.3026 -1.0900 0.0056 23 6 1.8539 -2.4846 0.0134 24 1 -0.3633 0.0052 1.0276 25 1 -0.3632 0.8873 -0.5185 26 1 -0.3633 -0.8926 -0.5093 27 1 1.9742 2.1210 0.0004 28 1 4.6026 2.5048 -0.4466 29 1 5.6423 1.0676 -0.5946 30 1 4.5874 2.1121 1.9518 31 1 7.1278 2.3978 0.5273 32 1 7.6270 1.2461 2.6658 33 1 6.7073 2.4878 3.5492 34 1 9.1385 2.9717 3.6073 35 1 9.1771 2.9914 1.8281 36 1 7.5190 4.8499 3.5925 37 1 7.9209 8.4122 2.7479 38 1 7.0200 6.0021 1.4541 39 1 7.9399 4.7607 0.5707 40 1 5.4699 4.2568 2.2918 41 1 5.5085 4.2764 0.5126 42 1 1.7426 -2.8248 1.0429 43 1 0.8954 -2.5607 -0.5001 44 1 2.5899 -3.1059 -0.4971 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 52.979819 kcal Electronic energy + Delta-G solvation = -21257.903822 eV Core-core repulsion = 18210.708703 eV Total energy + Delta-G solvation = -3047.195119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30893 -38.15817 -35.23398 -33.46121 -32.14108 -32.04557 -29.60570 -29.10558 -27.16756 -26.93600 -24.85696 -23.52351 -21.48072 -20.50981 -20.42165 -19.54900 -18.58428 -16.67255 -16.25872 -15.83965 -15.32709 -14.61779 -14.48567 -14.34369 -13.76953 -13.57294 -13.48215 -13.16782 -12.93972 -12.66750 -12.65310 -12.53471 -12.42355 -12.15190 -11.73353 -11.48320 -11.22594 -10.96389 -10.73078 -10.51554 -10.35937 -10.25750 -10.06786 -9.85112 -9.32052 -9.19117 -8.91770 -8.60396 -8.55081 -8.26473 -7.88355 -5.91876 -3.97573 1.77719 2.40052 2.71358 3.33004 3.41080 3.45409 4.32456 4.41652 4.48980 4.65079 4.78541 4.86673 4.94742 5.13136 5.18897 5.34398 5.36794 5.47708 5.49282 5.62644 5.72974 5.76627 5.80129 6.02979 6.14498 6.26808 6.38006 6.44276 6.49891 6.61856 6.73262 6.76220 6.90671 6.93005 7.01281 7.20808 7.30330 7.45359 7.60699 7.69325 7.78138 7.82388 8.10602 8.23180 8.55355 9.07248 9.66783 11.13501 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044072 B = 0.002928 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.164653 B = 9561.531064 C = 9954.491941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.075 3.925 3 C -0.268 4.268 4 C 0.086 3.914 5 C 0.139 3.861 6 N -0.681 5.681 7 C 0.092 3.908 8 C -0.100 4.100 9 C -0.108 4.108 10 C 0.048 3.952 11 C -0.510 4.510 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.105 4.105 20 C -0.143 4.143 21 N -0.278 5.278 22 N -0.379 5.379 23 C 0.102 3.898 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.339 0.661 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.024 0.976 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.032 0.968 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 -15.494 -6.420 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.297 4.297 4 C -0.081 4.081 5 C 0.008 3.992 6 N -0.312 5.312 7 C -0.017 4.017 8 C -0.138 4.138 9 C -0.147 4.147 10 C 0.030 3.970 11 C -0.548 4.548 12 H 0.072 0.928 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.716 3.284 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.144 4.144 20 C -0.183 4.183 21 N -0.100 5.100 22 N -0.162 5.162 23 C -0.039 4.039 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.163 0.837 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.026 -17.143 -6.415 23.681 hybrid contribution -0.219 2.220 -0.175 2.238 sum -15.245 -14.923 -6.590 22.327 Atomic orbital electron populations 1.20428 0.87534 1.03589 1.03256 1.21040 0.94515 0.87441 1.02161 1.21178 0.91895 0.99006 1.17654 1.22232 0.95296 0.91534 0.99045 1.20224 0.91797 0.95245 0.91970 1.60640 1.08963 1.53092 1.08475 1.21649 0.90455 0.90426 0.99195 1.21480 0.97101 0.98783 0.96436 1.21629 0.95385 0.97596 1.00044 1.18659 0.94999 0.89321 0.94069 1.21307 0.92813 0.91006 1.49670 0.92775 1.24975 0.95620 0.98169 0.95353 1.69887 1.21166 1.10735 1.51303 0.86607 0.83642 0.80700 0.77469 1.19851 1.21156 1.21146 1.21549 0.93406 1.00668 0.98761 1.22295 1.00277 0.95869 0.99809 1.77411 0.95512 1.12680 1.24369 1.48485 1.04097 1.05802 1.57787 1.21784 1.00722 0.78222 1.03216 0.90260 0.89684 0.91390 0.83715 0.93091 0.89897 0.84301 0.91068 0.93063 0.92853 0.93438 0.93530 0.95803 0.93245 0.89165 0.94908 0.92783 0.94214 0.90886 0.89831 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.12 36.01 0.36 -0.20 16 2 C 0.08 0.81 6.93 -82.26 -0.57 0.24 16 3 C -0.27 -3.33 10.65 -40.01 -0.43 -3.76 16 4 C 0.09 1.24 6.73 -82.40 -0.55 0.68 16 5 C 0.14 1.99 6.04 -4.98 -0.03 1.96 16 6 N -0.68 -10.70 6.24 -108.00 -0.67 -11.38 16 7 C 0.09 1.60 2.47 -67.71 -0.17 1.43 16 8 C -0.10 -1.85 5.53 -26.73 -0.15 -2.00 16 9 C -0.11 -2.31 5.14 -26.73 -0.14 -2.45 16 10 C 0.05 1.20 2.10 -91.77 -0.19 1.00 16 11 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 12 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.11 -2.47 4.98 -26.73 -0.13 -2.60 16 20 C -0.14 -2.74 5.17 -26.73 -0.14 -2.88 16 21 N -0.28 -4.20 12.58 33.67 0.42 -3.77 16 22 N -0.38 -4.45 4.01 -63.88 -0.26 -4.70 16 23 C 0.10 0.71 11.27 59.85 0.67 1.39 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.31 7.08 -51.93 -0.37 -0.06 16 27 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.05 0.69 7.44 -51.93 -0.39 0.31 16 29 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 30 H 0.34 5.21 8.46 -39.29 -0.33 4.87 16 31 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.09 2.39 6.07 -51.93 -0.31 2.07 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 41 H 0.04 0.70 7.45 -51.93 -0.39 0.31 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.35 7.05 -51.93 -0.37 -0.02 16 44 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -31.46 349.07 -9.08 -40.54 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.59 Total: 2.61 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.85 Total: -20.05 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.12 Total: -44.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.46 -9.08 -40.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.516 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds