Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35313 * 126.13015 * 2 1 4 4 C 1.39871 * 107.92265 * 180.14924 * 3 2 1 5 5 C 1.50700 * 125.89779 * 179.86624 * 4 3 2 6 6 N 1.46897 * 109.47458 * 94.71041 * 5 4 3 7 7 C 1.46894 * 111.00430 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47515 * 205.00020 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47328 * 60.00126 * 9 8 7 11 11 C 1.50701 * 109.46990 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00099 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99755 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00246 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47152 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46821 * 119.99784 * 15 13 11 18 18 H 1.48494 * 109.47204 * 240.00116 * 15 13 11 19 19 C 1.53002 * 109.46891 * 299.99597 * 10 9 8 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 10 9 21 21 N 1.30837 * 108.20236 * 359.59403 * 4 3 2 22 22 N 1.34951 * 126.12414 * 179.70424 * 2 1 3 23 23 C 1.46497 * 126.03875 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.47097 * 270.29235 * 1 2 3 25 25 H 1.08998 * 109.46635 * 30.29738 * 1 2 3 26 26 H 1.08998 * 109.46745 * 150.29407 * 1 2 3 27 27 H 1.08000 * 126.03812 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.46811 * 334.70630 * 5 4 3 29 29 H 1.09001 * 109.46991 * 214.70916 * 5 4 3 30 30 H 1.00902 * 110.99811 * 303.95209 * 6 5 4 31 31 H 1.08998 * 109.46828 * 325.00585 * 7 6 5 32 32 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 34 34 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 35 35 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 36 36 H 1.08992 * 109.47554 * 59.99639 * 10 9 8 37 37 H 0.96991 * 120.00061 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.47097 * 180.02562 * 19 10 9 39 39 H 1.09001 * 109.47142 * 300.00176 * 19 10 9 40 40 H 1.09001 * 109.47375 * 59.99908 * 20 19 10 41 41 H 1.09000 * 109.47140 * 179.97438 * 20 19 10 42 42 H 1.09000 * 109.47214 * 270.01962 * 23 22 2 43 43 H 1.09003 * 109.47126 * 30.02320 * 23 22 2 44 44 H 1.09007 * 109.46767 * 150.02380 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6336 0.6559 -0.0035 5 6 4.8544 1.5394 -0.0075 6 7 5.3217 1.7353 1.3713 7 6 6.5136 2.5932 1.4063 8 6 7.3215 2.2924 2.6703 9 6 8.5626 3.1864 2.7070 10 6 8.1334 4.6549 2.7136 11 6 9.3559 5.5354 2.7492 12 1 10.3405 5.0920 2.7650 13 6 9.2173 6.9072 2.7604 14 7 8.0183 7.4472 2.7396 15 14 10.7327 7.9987 2.8052 16 1 11.9524 7.1517 2.8227 17 1 10.7518 8.8685 1.6018 18 1 10.6985 8.8433 4.0261 19 6 7.3255 4.9557 1.4496 20 6 6.0844 4.0618 1.4129 21 7 3.6335 -0.6525 0.0033 22 7 2.3026 -1.0900 0.0056 23 6 1.8539 -2.4846 0.0134 24 1 -0.3633 0.0052 1.0276 25 1 -0.3632 0.8873 -0.5185 26 1 -0.3633 -0.8926 -0.5093 27 1 1.9742 2.1210 0.0004 28 1 4.6026 2.5048 -0.4466 29 1 5.6423 1.0676 -0.5946 30 1 4.5874 2.1121 1.9518 31 1 7.1278 2.3978 0.5273 32 1 7.6270 1.2461 2.6658 33 1 6.7073 2.4878 3.5492 34 1 9.1385 2.9717 3.6073 35 1 9.1771 2.9914 1.8281 36 1 7.5190 4.8499 3.5925 37 1 7.9209 8.4122 2.7479 38 1 7.0200 6.0021 1.4541 39 1 7.9399 4.7607 0.5707 40 1 5.4699 4.2568 2.2918 41 1 5.5085 4.2764 0.5126 42 1 1.7426 -2.8248 1.0429 43 1 0.8954 -2.5607 -0.5001 44 1 2.5899 -3.1059 -0.4971 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = 33.538694 kcal Electronic energy + Delta-G solvation = -21258.746853 eV Core-core repulsion = 18210.708703 eV Total energy + Delta-G solvation = -3048.038149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.18564 -39.74126 -36.65429 -34.79633 -33.67568 -32.83753 -31.30186 -30.64721 -28.16959 -27.84657 -26.31134 -24.97280 -23.18579 -22.12498 -21.32150 -20.77346 -20.01765 -18.37012 -17.48372 -16.80701 -16.65419 -16.40465 -15.81729 -15.21755 -15.03797 -14.86784 -14.57331 -14.30963 -14.15508 -14.02501 -13.92360 -13.40745 -13.38212 -13.13230 -13.08052 -12.91054 -12.87665 -12.66302 -12.48845 -12.15601 -12.05879 -11.76518 -11.70375 -11.43072 -11.16638 -10.77736 -10.55897 -10.36258 -10.05997 -9.43965 -9.23408 -8.04957 -6.18828 0.91779 1.40164 1.42174 1.53467 1.66428 1.75099 2.45073 3.20561 3.33750 3.59546 3.78770 3.95907 4.08894 4.19559 4.26365 4.38866 4.43998 4.49628 4.58581 4.63192 4.65236 4.70157 4.77831 4.81189 4.83022 4.87608 4.91034 5.01198 5.09249 5.12776 5.25430 5.30527 5.35446 5.42214 5.49712 5.63501 5.67379 5.71628 6.07308 6.12010 6.20625 6.24153 6.43392 6.47505 6.81473 6.94125 7.48878 8.98661 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.044072 B = 0.002928 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.164653 B = 9561.531064 C = 9954.491941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.084 3.916 3 C -0.294 4.294 4 C 0.070 3.930 5 C 0.142 3.858 6 N -0.678 5.678 7 C 0.104 3.896 8 C -0.092 4.092 9 C -0.101 4.101 10 C 0.045 3.955 11 C -0.533 4.533 12 H 0.049 0.951 13 C 0.011 3.989 14 N -0.917 5.917 15 Si 0.951 3.049 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.098 4.098 20 C -0.131 4.131 21 N -0.322 5.322 22 N -0.381 5.381 23 C 0.091 3.909 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.342 0.658 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.047 0.953 36 H -0.008 1.008 37 H 0.259 0.741 38 H 0.057 0.943 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.362 -16.754 -7.017 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.044 4.044 3 C -0.323 4.323 4 C -0.096 4.096 5 C 0.012 3.988 6 N -0.309 5.309 7 C -0.005 4.005 8 C -0.130 4.130 9 C -0.139 4.139 10 C 0.027 3.973 11 C -0.571 4.571 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.556 5.556 15 Si 0.777 3.223 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.137 4.137 20 C -0.170 4.170 21 N -0.145 5.145 22 N -0.164 5.164 23 C -0.049 4.049 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.172 0.828 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.010 0.990 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.423 -18.427 -7.012 25.660 hybrid contribution 0.141 2.556 0.018 2.560 sum -16.282 -15.870 -6.995 23.789 Atomic orbital electron populations 1.20592 0.84134 1.05303 1.04492 1.21711 0.96461 0.86586 0.99686 1.21426 0.91501 1.00241 1.19137 1.22234 0.95878 0.91603 0.99897 1.20180 0.92036 0.95752 0.90876 1.60578 1.08589 1.52098 1.09609 1.21421 0.91171 0.89331 0.98612 1.21381 0.95887 0.98838 0.96913 1.21494 0.96694 0.95692 1.00002 1.18634 0.93937 0.91417 0.93355 1.21676 0.93546 0.91961 1.49930 0.93231 1.25735 0.98424 0.99532 0.95043 1.70024 1.22930 1.10998 1.51697 0.85614 0.80303 0.78830 0.77558 1.19295 1.20616 1.20706 1.21341 0.94951 0.99686 0.97672 1.22151 0.98239 0.96253 1.00373 1.77294 0.98031 1.13135 1.26051 1.48846 1.03195 1.07577 1.56759 1.22166 1.02217 0.76032 1.04459 0.89056 0.88594 0.89102 0.82797 0.92332 0.90415 0.83964 0.90942 0.91528 0.93162 0.93627 0.93382 0.99004 0.93180 0.92458 0.95432 0.93362 0.92509 0.89838 0.86446 0.89413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 10.12 71.24 0.72 -0.06 16 2 C 0.08 1.62 6.93 41.41 0.29 1.90 16 3 C -0.29 -6.96 10.65 21.99 0.23 -6.73 16 4 C 0.07 1.96 6.73 43.10 0.29 2.25 16 5 C 0.14 3.99 6.04 85.56 0.52 4.50 16 6 N -0.68 -20.69 6.24 -495.59 -3.09 -23.78 16 7 C 0.10 3.56 2.47 44.92 0.11 3.67 16 8 C -0.09 -3.35 5.53 30.59 0.17 -3.18 16 9 C -0.10 -4.30 5.14 30.59 0.16 -4.14 16 10 C 0.04 2.30 2.10 -11.54 -0.02 2.28 16 11 C -0.53 -30.15 8.56 25.60 0.22 -29.94 16 12 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 13 C 0.01 0.61 5.30 84.66 0.45 1.06 16 14 N -0.92 -53.81 11.32 21.45 0.24 -53.57 16 15 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C -0.10 -4.68 4.98 30.59 0.15 -4.53 16 20 C -0.13 -4.99 5.17 30.60 0.16 -4.83 16 21 N -0.32 -9.53 12.58 -47.38 -0.60 -10.12 16 22 N -0.38 -8.27 4.01 -356.02 -1.43 -9.70 16 23 C 0.09 1.05 11.27 127.77 1.44 2.49 16 24 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.42 7.08 -2.39 -0.02 0.40 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.06 1.53 7.44 -2.39 -0.02 1.52 16 29 H 0.08 2.23 8.05 -2.39 -0.02 2.21 16 30 H 0.34 10.20 8.46 -89.69 -0.76 9.44 16 31 H 0.07 2.49 7.80 -2.39 -0.02 2.47 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 41 H 0.06 1.96 7.45 -2.39 -0.02 1.94 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.12 0.53 7.05 -2.39 -0.02 0.51 16 44 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -69.04 349.07 2.24 -66.80 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.21 Total: 19.05 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.88 Total: -35.24 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -4.87 Total: -97.16 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -69.04 2.24 -66.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.338 kcal (2) G-P(sol) polarization free energy of solvation -69.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds