Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47403 * 2 1 4 4 C 1.46901 * 111.00040 * 301.63417 * 3 2 1 5 5 C 1.50705 * 109.47060 * 288.93199 * 4 3 2 6 6 H 1.07993 * 119.99791 * 4.79082 * 5 4 3 7 7 C 1.37878 * 119.99536 * 184.79461 * 5 4 3 8 8 N 1.31510 * 120.00695 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99516 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47101 * 90.00029 * 9 7 5 11 11 H 1.48499 * 109.47061 * 209.99841 * 9 7 5 12 12 H 1.48496 * 109.47258 * 330.00153 * 9 7 5 13 13 C 1.46901 * 111.00107 * 65.58782 * 3 2 1 14 14 C 1.50702 * 109.46855 * 75.36201 * 13 3 2 15 15 C 1.38165 * 120.02675 * 255.73247 * 14 13 3 16 16 C 1.38249 * 120.05328 * 179.77029 * 15 14 13 17 17 C 1.50697 * 119.94305 * 180.25923 * 16 15 14 18 18 C 1.52996 * 109.47116 * 120.25761 * 17 16 15 19 19 C 1.53002 * 109.46606 * 240.25301 * 17 16 15 20 20 C 1.38287 * 120.10842 * 0.51145 * 16 15 14 21 21 C 1.38124 * 120.05829 * 359.74642 * 20 16 15 22 22 C 1.38707 * 120.02723 * 76.01852 * 14 13 3 23 23 O 1.35904 * 120.05593 * 359.97438 * 22 14 13 24 24 H 1.09009 * 109.46563 * 305.44328 * 1 2 3 25 25 H 1.08998 * 109.47640 * 65.43919 * 1 2 3 26 26 H 1.08999 * 109.47253 * 185.44696 * 1 2 3 27 27 H 1.09005 * 109.46866 * 239.99740 * 2 1 3 28 28 H 1.09000 * 109.47220 * 120.00457 * 2 1 3 29 29 H 1.08999 * 109.47118 * 48.92893 * 4 3 2 30 30 H 1.09002 * 109.47508 * 168.93083 * 4 3 2 31 31 H 0.96994 * 120.00593 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47206 * 195.36652 * 13 3 2 33 33 H 1.09004 * 109.46726 * 315.36232 * 13 3 2 34 34 H 1.08000 * 119.97288 * 0.03245 * 15 14 13 35 35 H 1.09001 * 109.47373 * 0.24872 * 17 16 15 36 36 H 1.09002 * 109.47027 * 299.99572 * 18 17 16 37 37 H 1.08997 * 109.47303 * 59.99934 * 18 17 16 38 38 H 1.09005 * 109.47072 * 179.97438 * 18 17 16 39 39 H 1.09006 * 109.47540 * 60.00385 * 19 17 16 40 40 H 1.09005 * 109.46646 * 179.97438 * 19 17 16 41 41 H 1.08997 * 109.47610 * 299.99942 * 19 17 16 42 42 H 1.08002 * 119.97118 * 179.71496 * 20 16 15 43 43 H 1.08001 * 120.02979 * 179.97438 * 21 20 16 44 44 H 0.96699 * 114.00475 * 95.01807 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5171 2.1211 -1.1677 5 6 2.1988 1.6144 -2.4125 6 1 2.8740 0.7736 -2.3542 7 6 1.9606 2.2246 -3.6258 8 7 1.1381 3.2483 -3.6969 9 14 2.8063 1.5971 -5.1687 10 1 1.9615 0.5561 -5.8076 11 1 3.0059 2.7228 -6.1164 12 1 4.1234 1.0134 -4.8088 13 6 1.6608 2.0702 1.2488 14 6 2.5565 1.5889 2.3612 15 6 2.0718 0.7043 3.3053 16 6 2.8943 0.2587 4.3233 17 6 2.3648 -0.7107 5.3484 18 6 3.1975 -1.9937 5.3150 19 6 2.4542 -0.0807 6.7398 20 6 4.2005 0.7051 4.4053 21 6 4.6883 1.5936 3.4669 22 6 3.8663 2.0382 2.4413 23 8 4.3438 2.9124 1.5168 24 1 -0.3633 0.5960 0.8373 25 1 -0.3634 0.4271 -0.9346 26 1 -0.3634 -1.0230 0.0975 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.4411 1.9711 -1.2561 30 1 1.7269 3.1837 -1.0453 31 1 0.9703 3.6773 -4.5505 32 1 1.7851 3.1456 1.1218 33 1 0.6224 1.8514 1.4979 34 1 1.0507 0.3574 3.2457 35 1 1.3248 -0.9464 5.1225 36 1 3.1338 -2.4425 4.3237 37 1 4.2374 -1.7580 5.5410 38 1 2.8147 -2.6947 6.0568 39 1 1.8610 0.8334 6.7637 40 1 2.0708 -0.7817 7.4813 41 1 3.4941 0.1550 6.9658 42 1 4.8398 0.3591 5.2041 43 1 5.7084 1.9422 3.5316 44 1 4.2888 3.8394 1.7867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180558050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = -28.116329 kcal Electronic energy + Delta-G solvation = -22008.672243 eV Core-core repulsion = 18925.667780 eV Total energy + Delta-G solvation = -3083.004463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.92294 -37.32099 -36.88360 -34.43730 -32.60847 -31.40737 -29.51417 -28.70676 -27.26656 -26.88034 -24.67419 -23.15061 -22.68411 -22.04201 -19.95078 -18.86755 -17.88453 -16.20762 -16.06318 -15.60997 -15.07766 -14.77108 -14.65779 -14.12643 -13.96960 -13.75394 -13.54382 -13.16217 -12.91910 -12.65673 -12.42480 -12.23104 -11.80839 -11.76520 -11.66409 -11.42059 -11.18149 -11.08687 -10.89458 -10.85523 -10.75875 -10.54384 -10.48073 -10.08832 -9.94380 -9.64252 -9.14451 -8.62142 -8.34626 -8.11325 -7.04848 -5.94543 -3.93988 1.48171 1.55758 3.36831 3.42789 3.48706 3.81039 4.50030 4.54999 4.66473 4.73829 5.08143 5.10607 5.15289 5.21458 5.37802 5.43471 5.45006 5.47635 5.61127 5.68511 5.76586 5.80525 5.84608 5.93250 5.97725 6.05648 6.09758 6.12403 6.16802 6.22332 6.32067 6.49389 6.53071 6.71906 6.75423 6.84484 6.96333 7.07128 7.38936 7.46801 7.90507 8.09902 8.20447 8.33841 8.65753 9.13179 9.69112 11.16243 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.004216 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.839878 B = 6639.913082 C = 7025.586717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.061 3.939 3 N -0.518 5.518 4 C 0.190 3.810 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.902 5.902 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.093 3.907 14 C -0.083 4.083 15 C -0.100 4.100 16 C -0.093 4.093 17 C -0.054 4.054 18 C -0.144 4.144 19 C -0.143 4.143 20 C -0.108 4.108 21 C -0.153 4.153 22 C 0.128 3.872 23 O -0.478 6.478 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.051 0.949 29 H -0.004 1.004 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 -5.024 19.715 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.068 4.068 3 N -0.241 5.241 4 C 0.066 3.934 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.036 4.036 14 C -0.084 4.084 15 C -0.118 4.118 16 C -0.093 4.093 17 C -0.072 4.072 18 C -0.201 4.201 19 C -0.200 4.200 20 C -0.126 4.126 21 C -0.172 4.172 22 C 0.082 3.918 23 O -0.286 6.286 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.014 0.986 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.825 -5.403 19.196 20.141 hybrid contribution -0.516 0.223 -0.688 0.889 sum 2.309 -5.180 18.508 19.357 Atomic orbital electron populations 1.22402 0.99601 1.00512 1.02240 1.21964 0.91836 0.91826 1.01153 1.62293 1.59220 1.01485 1.01152 1.19817 0.93615 0.93622 0.86380 1.21150 1.25772 1.15264 0.91311 0.92092 1.24953 0.95566 0.95117 0.99018 1.69949 1.36517 1.22351 1.25433 0.86541 0.80036 0.78239 0.82870 1.20883 1.21353 1.19808 1.20918 0.94300 0.98771 0.89563 1.20345 0.94107 0.97891 0.96051 1.20853 0.99499 0.97252 0.94237 1.19725 0.94184 0.98731 0.96693 1.20070 0.99745 0.93815 0.93613 1.21853 0.99872 0.96436 1.01921 1.21852 1.01984 1.00610 0.95538 1.20678 0.95102 0.97984 0.98875 1.21407 1.00036 1.00563 0.95157 1.18297 0.90669 0.94314 0.88504 1.85016 1.83761 1.18432 1.41410 0.93648 0.91276 0.93588 0.90536 0.93083 0.98643 0.95244 0.93101 0.90828 0.94676 0.86350 0.90664 0.92385 0.92563 0.92675 0.92595 0.92675 0.92563 0.86460 0.85973 0.76501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.22 37.16 0.34 -3.10 16 2 C 0.06 1.22 5.80 -3.83 -0.02 1.20 16 3 N -0.52 -11.48 4.58 -237.51 -1.09 -12.57 16 4 C 0.19 5.00 4.53 -4.97 -0.02 4.98 16 5 C -0.50 -14.27 8.68 -34.44 -0.30 -14.57 16 6 H 0.06 1.77 7.28 -52.49 -0.38 1.39 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 9 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.09 1.72 4.64 -4.97 -0.02 1.70 16 14 C -0.08 -1.35 4.83 -104.47 -0.50 -1.86 16 15 C -0.10 -1.41 8.67 -39.60 -0.34 -1.75 16 16 C -0.09 -1.15 4.78 -104.60 -0.50 -1.65 16 17 C -0.05 -0.53 3.09 -91.77 -0.28 -0.81 16 18 C -0.14 -1.29 9.01 37.16 0.33 -0.96 16 19 C -0.14 -1.18 9.01 37.16 0.33 -0.85 16 20 C -0.11 -1.31 8.70 -39.61 -0.34 -1.66 16 21 C -0.15 -2.08 9.99 -39.43 -0.39 -2.48 16 22 C 0.13 2.04 6.68 -39.22 -0.26 1.78 16 23 O -0.48 -8.02 12.82 -19.44 -0.25 -8.27 16 24 H 0.04 0.77 6.07 -51.92 -0.32 0.45 16 25 H 0.07 1.44 6.45 -51.93 -0.33 1.11 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.67 7.16 -51.93 -0.37 1.30 16 28 H 0.05 0.94 6.99 -51.93 -0.36 0.58 16 29 H 0.00 -0.11 5.84 -51.93 -0.30 -0.41 16 30 H 0.03 0.84 7.71 -51.93 -0.40 0.44 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.39 7.50 -51.93 -0.39 1.00 16 33 H 0.04 0.62 5.66 -51.93 -0.29 0.33 16 34 H 0.12 1.56 7.89 -52.49 -0.41 1.14 16 35 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.49 7.38 -51.93 -0.38 0.10 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.45 7.38 -51.93 -0.38 0.06 16 42 H 0.12 1.17 7.09 -52.49 -0.37 0.79 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.38 4.45 9.06 45.56 0.41 4.86 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -32.00 349.06 -8.82 -40.82 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.37 Total: 2.51 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.08 Total: -18.55 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.35 Total: -38.97 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.25 Total: -8.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.00 -8.82 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180558050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.703 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds