Wall clock time and date at job start Mon Mar 30 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46894 * 109.47403 * 2 1 4 4 C 1.46901 * 111.00040 * 301.63417 * 3 2 1 5 5 C 1.50705 * 109.47060 * 288.93199 * 4 3 2 6 6 H 1.07993 * 119.99791 * 4.79082 * 5 4 3 7 7 C 1.37878 * 119.99536 * 184.79461 * 5 4 3 8 8 N 1.31510 * 120.00695 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99516 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47101 * 90.00029 * 9 7 5 11 11 H 1.48499 * 109.47061 * 209.99841 * 9 7 5 12 12 H 1.48496 * 109.47258 * 330.00153 * 9 7 5 13 13 C 1.46901 * 111.00107 * 65.58782 * 3 2 1 14 14 C 1.50702 * 109.46855 * 75.36201 * 13 3 2 15 15 C 1.38165 * 120.02675 * 255.73247 * 14 13 3 16 16 C 1.38249 * 120.05328 * 179.77029 * 15 14 13 17 17 C 1.50697 * 119.94305 * 180.25923 * 16 15 14 18 18 C 1.52996 * 109.47116 * 120.25761 * 17 16 15 19 19 C 1.53002 * 109.46606 * 240.25301 * 17 16 15 20 20 C 1.38287 * 120.10842 * 0.51145 * 16 15 14 21 21 C 1.38124 * 120.05829 * 359.74642 * 20 16 15 22 22 C 1.38707 * 120.02723 * 76.01852 * 14 13 3 23 23 O 1.35904 * 120.05593 * 359.97438 * 22 14 13 24 24 H 1.09009 * 109.46563 * 305.44328 * 1 2 3 25 25 H 1.08998 * 109.47640 * 65.43919 * 1 2 3 26 26 H 1.08999 * 109.47253 * 185.44696 * 1 2 3 27 27 H 1.09005 * 109.46866 * 239.99740 * 2 1 3 28 28 H 1.09000 * 109.47220 * 120.00457 * 2 1 3 29 29 H 1.08999 * 109.47118 * 48.92893 * 4 3 2 30 30 H 1.09002 * 109.47508 * 168.93083 * 4 3 2 31 31 H 0.96994 * 120.00593 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47206 * 195.36652 * 13 3 2 33 33 H 1.09004 * 109.46726 * 315.36232 * 13 3 2 34 34 H 1.08000 * 119.97288 * 0.03245 * 15 14 13 35 35 H 1.09001 * 109.47373 * 0.24872 * 17 16 15 36 36 H 1.09002 * 109.47027 * 299.99572 * 18 17 16 37 37 H 1.08997 * 109.47303 * 59.99934 * 18 17 16 38 38 H 1.09005 * 109.47072 * 179.97438 * 18 17 16 39 39 H 1.09006 * 109.47540 * 60.00385 * 19 17 16 40 40 H 1.09005 * 109.46646 * 179.97438 * 19 17 16 41 41 H 1.08997 * 109.47610 * 299.99942 * 19 17 16 42 42 H 1.08002 * 119.97118 * 179.71496 * 20 16 15 43 43 H 1.08001 * 120.02979 * 179.97438 * 21 20 16 44 44 H 0.96699 * 114.00475 * 95.01807 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5171 2.1211 -1.1677 5 6 2.1988 1.6144 -2.4125 6 1 2.8740 0.7736 -2.3542 7 6 1.9606 2.2246 -3.6258 8 7 1.1381 3.2483 -3.6969 9 14 2.8063 1.5971 -5.1687 10 1 1.9615 0.5561 -5.8076 11 1 3.0059 2.7228 -6.1164 12 1 4.1234 1.0134 -4.8088 13 6 1.6608 2.0702 1.2488 14 6 2.5565 1.5889 2.3612 15 6 2.0718 0.7043 3.3053 16 6 2.8943 0.2587 4.3233 17 6 2.3648 -0.7107 5.3484 18 6 3.1975 -1.9937 5.3150 19 6 2.4542 -0.0807 6.7398 20 6 4.2005 0.7051 4.4053 21 6 4.6883 1.5936 3.4669 22 6 3.8663 2.0382 2.4413 23 8 4.3438 2.9124 1.5168 24 1 -0.3633 0.5960 0.8373 25 1 -0.3634 0.4271 -0.9346 26 1 -0.3634 -1.0230 0.0975 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.4411 1.9711 -1.2561 30 1 1.7269 3.1837 -1.0453 31 1 0.9703 3.6773 -4.5505 32 1 1.7851 3.1456 1.1218 33 1 0.6224 1.8514 1.4979 34 1 1.0507 0.3574 3.2457 35 1 1.3248 -0.9464 5.1225 36 1 3.1338 -2.4425 4.3237 37 1 4.2374 -1.7580 5.5410 38 1 2.8147 -2.6947 6.0568 39 1 1.8610 0.8334 6.7637 40 1 2.0708 -0.7817 7.4813 41 1 3.4941 0.1550 6.9658 42 1 4.8398 0.3591 5.2041 43 1 5.7084 1.9422 3.5316 44 1 4.2888 3.8394 1.7867 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180558050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:17 Heat of formation + Delta-G solvation = -48.786006 kcal Electronic energy + Delta-G solvation = -22009.568547 eV Core-core repulsion = 18925.667780 eV Total energy + Delta-G solvation = -3083.900767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05694 -38.75069 -38.17163 -35.44930 -34.70796 -32.68644 -31.07009 -30.00087 -28.62163 -27.90541 -26.22577 -24.98470 -23.75857 -23.21964 -21.38561 -20.14498 -19.06368 -18.33825 -17.27160 -16.87747 -16.64008 -16.31847 -15.97442 -15.81219 -15.05994 -14.80317 -14.60676 -14.53382 -14.24869 -13.92810 -13.62567 -13.37110 -13.16886 -13.08937 -12.95569 -12.84127 -12.74343 -12.56687 -12.47253 -12.42125 -11.90937 -11.89421 -11.68630 -11.61720 -11.46530 -11.30540 -11.06581 -10.57602 -9.73043 -9.21069 -8.82731 -8.16825 -6.25439 0.40424 0.46250 1.39048 1.40771 1.52583 2.41344 2.72918 3.14338 3.45963 3.53724 3.81358 3.87554 3.97296 4.22798 4.24545 4.32371 4.39626 4.43805 4.48449 4.57812 4.64556 4.68616 4.73988 4.88156 4.92751 4.97484 5.01457 5.06023 5.09033 5.18018 5.20925 5.23063 5.34636 5.38941 5.46399 5.47288 5.50987 5.67005 5.72428 5.76916 6.03651 6.11937 6.47035 6.70925 6.89529 7.03337 7.42883 8.93314 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.004216 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.839878 B = 6639.913082 C = 7025.586717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 N -0.531 5.531 4 C 0.208 3.792 5 C -0.514 4.514 6 H 0.053 0.947 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.270 1.270 13 C 0.099 3.901 14 C -0.104 4.104 15 C -0.104 4.104 16 C -0.088 4.088 17 C -0.053 4.053 18 C -0.142 4.142 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.155 4.155 22 C 0.105 3.895 23 O -0.505 6.505 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.072 0.928 29 H -0.021 1.021 30 H -0.002 1.002 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.147 0.853 43 H 0.138 0.862 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -6.798 21.569 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.065 4.065 3 N -0.254 5.254 4 C 0.082 3.918 5 C -0.553 4.553 6 H 0.071 0.929 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.195 1.195 13 C -0.029 4.029 14 C -0.106 4.106 15 C -0.123 4.123 16 C -0.088 4.088 17 C -0.072 4.072 18 C -0.200 4.200 19 C -0.197 4.197 20 C -0.118 4.118 21 C -0.173 4.173 22 C 0.060 3.940 23 O -0.316 6.316 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.090 0.910 29 H -0.004 1.004 30 H 0.016 0.984 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 3.525 -7.179 21.076 22.543 hybrid contribution -0.725 0.770 -1.145 1.559 sum 2.801 -6.408 19.931 21.122 Atomic orbital electron populations 1.22263 0.98038 1.02334 1.00943 1.21932 0.93120 0.90496 1.00943 1.62163 1.59664 1.02306 1.01262 1.19421 0.92384 0.92175 0.87789 1.21416 1.25905 1.15245 0.92731 0.92901 1.25819 0.96119 0.95200 1.02323 1.70067 1.37643 1.23391 1.26439 0.85466 0.78963 0.77970 0.78720 1.19700 1.20581 1.19476 1.20841 0.95485 0.97759 0.88822 1.20184 0.94189 0.99873 0.96305 1.20978 1.00234 0.96829 0.94213 1.20051 0.94029 0.98352 0.96389 1.20132 0.99920 0.93533 0.93597 1.21851 1.00141 0.96206 1.01769 1.21836 1.02421 1.00676 0.94787 1.21029 0.95346 0.96646 0.98778 1.21597 1.00499 1.00592 0.94623 1.18559 0.91124 0.94915 0.89387 1.84952 1.83955 1.19927 1.42765 0.92394 0.94552 0.90596 0.92852 0.90988 1.00360 0.98425 0.92797 0.92347 0.93831 0.85505 0.90422 0.93653 0.92044 0.90969 0.93110 0.91113 0.91982 0.83572 0.84375 0.74710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.41 9.22 71.98 0.66 -5.75 16 2 C 0.06 2.56 5.80 86.30 0.50 3.06 16 3 N -0.53 -24.28 4.58 -905.36 -4.15 -28.43 16 4 C 0.21 11.49 4.53 85.56 0.39 11.88 16 5 C -0.51 -30.56 8.68 25.60 0.22 -30.34 16 6 H 0.05 3.16 7.28 -2.91 -0.02 3.14 16 7 C 0.00 0.17 5.46 84.66 0.46 0.63 16 8 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 9 Si 0.96 46.14 29.54 68.60 2.03 48.16 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.10 3.77 4.64 85.56 0.40 4.16 16 14 C -0.10 -3.40 4.83 -19.77 -0.10 -3.50 16 15 C -0.10 -2.79 8.67 22.25 0.19 -2.59 16 16 C -0.09 -1.95 4.78 -19.85 -0.09 -2.04 16 17 C -0.05 -0.87 3.09 -11.54 -0.04 -0.91 16 18 C -0.14 -2.09 9.01 71.98 0.65 -1.45 16 19 C -0.14 -1.83 9.01 71.98 0.65 -1.18 16 20 C -0.10 -2.15 8.70 22.25 0.19 -1.95 16 21 C -0.15 -3.96 9.99 22.36 0.22 -3.73 16 22 C 0.11 3.36 6.68 22.50 0.15 3.51 16 23 O -0.50 -17.47 12.82 -92.47 -1.19 -18.66 16 24 H 0.06 1.93 6.07 -2.38 -0.01 1.91 16 25 H 0.04 1.54 6.45 -2.39 -0.02 1.53 16 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.38 7.16 -2.38 -0.02 2.36 16 28 H 0.07 2.60 6.99 -2.39 -0.02 2.59 16 29 H -0.02 -1.22 5.84 -2.39 -0.01 -1.23 16 30 H 0.00 -0.14 7.71 -2.39 -0.02 -0.16 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.06 2.35 7.50 -2.39 -0.02 2.33 16 33 H 0.04 1.56 5.66 -2.38 -0.01 1.55 16 34 H 0.13 3.11 7.89 -2.91 -0.02 3.08 16 35 H 0.08 1.25 7.87 -2.39 -0.02 1.23 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.84 7.38 -2.39 -0.02 0.82 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.06 0.74 7.38 -2.39 -0.02 0.73 16 42 H 0.15 2.30 7.09 -2.91 -0.02 2.28 16 43 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.40 9.79 9.06 -74.06 -0.67 9.12 16 Total: -1.00 -70.28 349.06 1.75 -68.53 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.31 Total: 17.90 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.46 Total: -30.19 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -3.87 Total: -85.73 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -1.19 Total: -18.66 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -70.28 1.75 -68.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180558050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds