Wall clock time and date at job start Mon Mar 30 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47219 * 2 1 4 4 N 1.30500 * 125.65358 * 304.98245 * 3 2 1 5 5 C 1.34126 * 109.25531 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.98696 * 179.97438 * 5 4 3 7 7 C 1.34668 * 108.02296 * 0.26115 * 5 4 3 8 8 C 1.50694 * 126.59038 * 179.70005 * 7 5 4 9 9 N 1.46894 * 109.47453 * 80.00258 * 8 7 5 10 10 C 1.46843 * 111.00235 * 66.04100 * 9 8 7 11 11 C 1.53038 * 109.52274 * 174.16247 * 10 9 8 12 12 C 1.53118 * 109.27906 * 59.18336 * 11 10 9 13 13 C 1.53126 * 109.16208 * 302.34317 * 12 11 10 14 14 H 1.08997 * 109.49906 * 297.71862 * 13 12 11 15 15 C 1.50695 * 109.50584 * 177.63284 * 13 12 11 16 16 H 1.07999 * 120.00122 * 239.99971 * 15 13 12 17 17 C 1.37877 * 120.00096 * 60.00297 * 15 13 12 18 18 N 1.31520 * 119.99831 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00267 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47033 * 59.99516 * 19 17 15 21 21 H 1.48498 * 109.47076 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46958 * 299.99993 * 19 17 15 23 23 C 1.46850 * 110.99767 * 301.83189 * 9 8 7 24 24 N 1.35044 * 125.64704 * 125.00182 * 3 2 1 25 25 H 0.97000 * 126.39550 * 359.94243 * 24 3 2 26 26 H 1.08994 * 109.47439 * 59.99374 * 1 2 3 27 27 H 1.09004 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46704 * 299.99669 * 1 2 3 29 29 H 1.09004 * 109.46704 * 240.00330 * 2 1 3 30 30 H 1.08998 * 109.47090 * 120.00961 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.02483 * 6 5 4 32 32 H 1.09001 * 109.46980 * 330.02583 * 6 5 4 33 33 H 1.09004 * 109.47113 * 210.02564 * 6 5 4 34 34 H 1.09003 * 109.46864 * 200.00157 * 8 7 5 35 35 H 1.09007 * 109.47397 * 319.99689 * 8 7 5 36 36 H 1.08998 * 109.46194 * 294.17954 * 10 9 8 37 37 H 1.09000 * 109.45966 * 54.15305 * 10 9 8 38 38 H 1.09003 * 109.50421 * 179.12017 * 11 10 9 39 39 H 1.08996 * 109.50749 * 299.24024 * 11 10 9 40 40 H 1.09001 * 109.52558 * 62.24684 * 12 11 10 41 41 H 1.08997 * 109.52580 * 182.37692 * 12 11 10 42 42 H 0.96995 * 120.00146 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.46149 * 305.86042 * 23 9 8 44 44 H 1.08998 * 109.46290 * 65.82478 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7128 2.3406 -0.8688 5 6 2.3468 3.4812 -0.5589 6 6 2.2481 4.7822 -1.3129 7 6 3.0920 3.2582 0.5405 8 6 3.9775 4.2549 1.2428 9 7 3.1562 5.1233 2.0967 10 6 2.5498 4.3602 3.1949 11 6 1.8237 5.3173 4.1429 12 6 0.7437 6.0757 3.3662 13 6 1.3951 6.8231 2.1992 14 1 2.1024 7.5565 2.5864 15 6 0.3316 7.5253 1.3951 16 1 0.1971 7.2846 0.3508 17 6 -0.4698 8.4750 1.9923 18 7 -0.3063 8.7678 3.2641 19 14 -1.7876 9.3460 0.9953 20 1 -2.7497 8.3462 0.4661 21 1 -2.5058 10.3140 1.8628 22 1 -1.1546 10.0707 -0.1358 23 6 2.1337 5.8222 1.3077 24 7 2.8882 1.9529 0.8989 25 1 3.2869 1.4948 1.6552 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.4309 5.3773 -0.9054 32 1 2.0585 4.5779 -2.3667 33 1 3.1837 5.3325 -1.2121 34 1 4.7054 3.7247 1.8570 35 1 4.4998 4.8616 0.5029 36 1 1.8377 3.6421 2.7882 37 1 3.3289 3.8291 3.7416 38 1 1.3604 4.7490 4.9494 39 1 2.5376 6.0272 4.5606 40 1 0.0082 5.3694 2.9812 41 1 0.2523 6.7889 4.0278 42 1 -0.8698 9.4362 3.6842 43 1 2.6107 6.3529 0.4837 44 1 1.4236 5.0973 0.9099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203243542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:02 Heat of formation + Delta-G solvation = 40.447531 kcal Electronic energy + Delta-G solvation = -22783.718248 eV Core-core repulsion = 19735.979689 eV Total energy + Delta-G solvation = -3047.738559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09028 -38.22557 -34.44350 -33.59129 -32.84603 -31.99164 -30.09249 -29.50587 -27.41635 -25.29559 -24.89156 -23.24212 -21.86977 -21.37655 -20.52215 -19.43016 -18.49071 -17.07899 -16.41705 -15.49987 -15.10414 -14.62257 -14.34962 -14.24799 -14.10099 -13.87616 -13.14131 -12.66894 -12.61493 -12.53018 -12.38485 -12.25745 -12.05044 -11.91945 -11.63488 -11.45396 -11.32875 -11.23822 -10.88660 -10.65088 -10.56173 -10.10801 -9.78781 -9.74094 -9.59411 -9.44953 -9.01636 -8.66578 -8.27805 -7.98516 -7.64458 -5.93303 -3.98975 2.16830 3.19213 3.27889 3.36151 3.40290 3.43596 4.40485 4.44464 4.62392 4.83368 5.10130 5.16767 5.19633 5.27193 5.36840 5.54227 5.57742 5.64235 5.70046 5.77544 5.87420 5.91546 6.01952 6.12936 6.17192 6.22182 6.31832 6.38847 6.43769 6.52627 6.54011 6.71290 6.78931 6.99847 7.05151 7.22796 7.39983 7.52509 7.63004 7.76160 7.81412 8.11309 8.20461 8.30156 8.52319 9.04800 9.65191 11.12758 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.005460 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.338163 B = 5126.536371 C = 5594.195958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.032 4.032 3 C 0.200 3.800 4 N -0.484 5.484 5 C 0.021 3.979 6 C -0.077 4.077 7 C -0.053 4.053 8 C 0.128 3.872 9 N -0.524 5.524 10 C 0.063 3.937 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.054 3.946 14 H 0.032 0.968 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.058 3.942 24 N -0.562 5.562 25 H 0.412 0.588 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 -15.155 -2.706 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.064 4.064 4 N -0.204 5.204 5 C -0.108 4.108 6 C -0.134 4.134 7 C -0.169 4.169 8 C -0.002 4.002 9 N -0.246 5.246 10 C -0.065 4.065 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.035 3.965 14 H 0.050 0.950 15 C -0.550 4.550 16 H 0.072 0.928 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.068 4.068 24 N -0.166 5.166 25 H 0.249 0.751 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.817 -14.712 -3.039 16.497 hybrid contribution -0.585 -0.364 0.301 0.752 sum 6.231 -15.076 -2.738 16.541 Atomic orbital electron populations 1.21676 0.93522 1.01610 1.03337 1.19872 0.97117 0.87264 1.02828 1.23114 0.96004 0.97393 0.89841 1.70052 1.24643 0.99572 1.26160 1.20517 0.98739 0.95234 0.96360 1.20415 1.02978 0.91262 0.98781 1.22156 1.07831 0.85902 1.01057 1.20793 0.93706 0.90555 0.95181 1.62471 1.25543 1.26046 1.10569 1.22015 0.96304 0.95247 0.92977 1.21671 0.99047 0.97872 0.96884 1.21648 0.95718 0.97969 0.99475 1.18683 0.93926 0.91959 0.91892 0.94959 1.21097 1.16905 1.20730 0.96270 0.92831 1.24918 0.97292 0.96684 0.94875 1.69881 1.39703 1.32839 1.10463 0.86717 0.82052 0.79487 0.80102 1.20387 1.21387 1.20227 1.22716 0.91577 0.96257 0.96240 1.43141 1.37661 1.10663 1.25164 0.75087 0.91248 0.92181 0.92646 0.89638 0.90934 0.89591 0.92007 0.91381 0.91159 0.88792 0.95938 0.93002 0.93746 0.92037 0.95389 0.89120 0.93084 0.91764 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.87 37.16 0.37 -1.12 16 2 C -0.03 -0.31 6.56 -27.88 -0.18 -0.50 16 3 C 0.20 2.81 7.43 -155.42 -1.15 1.66 16 4 N -0.48 -8.36 11.21 -7.07 -0.08 -8.44 16 5 C 0.02 0.37 5.97 -82.85 -0.49 -0.13 16 6 C -0.08 -1.25 8.28 36.01 0.30 -0.95 16 7 C -0.05 -0.81 5.07 -81.60 -0.41 -1.23 16 8 C 0.13 1.86 5.67 -4.98 -0.03 1.83 16 9 N -0.52 -9.41 4.86 -236.12 -1.15 -10.55 16 10 C 0.06 1.09 5.14 -3.84 -0.02 1.07 16 11 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 12 C -0.11 -2.64 5.02 -26.60 -0.13 -2.78 16 13 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 14 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 15 C -0.51 -14.00 8.57 -34.44 -0.30 -14.29 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.49 11.35 55.43 0.63 -24.86 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.06 1.22 2.57 -3.83 -0.01 1.21 16 24 N -0.56 -7.32 6.14 -6.54 -0.04 -7.36 16 25 H 0.41 4.04 8.96 -40.82 -0.37 3.67 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 1.58 6.12 -51.93 -0.32 1.26 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.00 6.78 -51.93 -0.35 0.64 16 34 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 35 H 0.09 1.30 7.51 -51.93 -0.39 0.91 16 36 H 0.02 0.42 7.47 -51.93 -0.39 0.03 16 37 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 1.31 6.42 -51.93 -0.33 0.98 16 44 H 0.04 0.79 5.16 -51.93 -0.27 0.52 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -30.81 336.40 -10.46 -41.27 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.34 Total: 3.30 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.53 Total: -14.87 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.64 Total: -51.22 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.81 -10.46 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203243542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.719 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds