Wall clock time and date at job start Mon Mar 30 2020 02:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.47219 * 2 1 4 4 N 1.30500 * 125.65358 * 304.98245 * 3 2 1 5 5 C 1.34126 * 109.25531 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.98696 * 179.97438 * 5 4 3 7 7 C 1.34668 * 108.02296 * 0.26115 * 5 4 3 8 8 C 1.50694 * 126.59038 * 179.70005 * 7 5 4 9 9 N 1.46894 * 109.47453 * 80.00258 * 8 7 5 10 10 C 1.46843 * 111.00235 * 66.04100 * 9 8 7 11 11 C 1.53038 * 109.52274 * 174.16247 * 10 9 8 12 12 C 1.53118 * 109.27906 * 59.18336 * 11 10 9 13 13 C 1.53126 * 109.16208 * 302.34317 * 12 11 10 14 14 H 1.08997 * 109.49906 * 297.71862 * 13 12 11 15 15 C 1.50695 * 109.50584 * 177.63284 * 13 12 11 16 16 H 1.07999 * 120.00122 * 239.99971 * 15 13 12 17 17 C 1.37877 * 120.00096 * 60.00297 * 15 13 12 18 18 N 1.31520 * 119.99831 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00267 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47033 * 59.99516 * 19 17 15 21 21 H 1.48498 * 109.47076 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46958 * 299.99993 * 19 17 15 23 23 C 1.46850 * 110.99767 * 301.83189 * 9 8 7 24 24 N 1.35044 * 125.64704 * 125.00182 * 3 2 1 25 25 H 0.97000 * 126.39550 * 359.94243 * 24 3 2 26 26 H 1.08994 * 109.47439 * 59.99374 * 1 2 3 27 27 H 1.09004 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46704 * 299.99669 * 1 2 3 29 29 H 1.09004 * 109.46704 * 240.00330 * 2 1 3 30 30 H 1.08998 * 109.47090 * 120.00961 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.02483 * 6 5 4 32 32 H 1.09001 * 109.46980 * 330.02583 * 6 5 4 33 33 H 1.09004 * 109.47113 * 210.02564 * 6 5 4 34 34 H 1.09003 * 109.46864 * 200.00157 * 8 7 5 35 35 H 1.09007 * 109.47397 * 319.99689 * 8 7 5 36 36 H 1.08998 * 109.46194 * 294.17954 * 10 9 8 37 37 H 1.09000 * 109.45966 * 54.15305 * 10 9 8 38 38 H 1.09003 * 109.50421 * 179.12017 * 11 10 9 39 39 H 1.08996 * 109.50749 * 299.24024 * 11 10 9 40 40 H 1.09001 * 109.52558 * 62.24684 * 12 11 10 41 41 H 1.08997 * 109.52580 * 182.37692 * 12 11 10 42 42 H 0.96995 * 120.00146 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.46149 * 305.86042 * 23 9 8 44 44 H 1.08998 * 109.46290 * 65.82478 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7128 2.3406 -0.8688 5 6 2.3468 3.4812 -0.5589 6 6 2.2481 4.7822 -1.3129 7 6 3.0920 3.2582 0.5405 8 6 3.9775 4.2549 1.2428 9 7 3.1562 5.1233 2.0967 10 6 2.5498 4.3602 3.1949 11 6 1.8237 5.3173 4.1429 12 6 0.7437 6.0757 3.3662 13 6 1.3951 6.8231 2.1992 14 1 2.1024 7.5565 2.5864 15 6 0.3316 7.5253 1.3951 16 1 0.1971 7.2846 0.3508 17 6 -0.4698 8.4750 1.9923 18 7 -0.3063 8.7678 3.2641 19 14 -1.7876 9.3460 0.9953 20 1 -2.7497 8.3462 0.4661 21 1 -2.5058 10.3140 1.8628 22 1 -1.1546 10.0707 -0.1358 23 6 2.1337 5.8222 1.3077 24 7 2.8882 1.9529 0.8989 25 1 3.2869 1.4948 1.6552 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.4309 5.3773 -0.9054 32 1 2.0585 4.5779 -2.3667 33 1 3.1837 5.3325 -1.2121 34 1 4.7054 3.7247 1.8570 35 1 4.4998 4.8616 0.5029 36 1 1.8377 3.6421 2.7882 37 1 3.3289 3.8291 3.7416 38 1 1.3604 4.7490 4.9494 39 1 2.5376 6.0272 4.5606 40 1 0.0082 5.3694 2.9812 41 1 0.2523 6.7889 4.0278 42 1 -0.8698 9.4362 3.6842 43 1 2.6107 6.3529 0.4837 44 1 1.4236 5.0973 0.9099 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203243542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:01 Heat of formation + Delta-G solvation = 20.495613 kcal Electronic energy + Delta-G solvation = -22784.583428 eV Core-core repulsion = 19735.979689 eV Total energy + Delta-G solvation = -3048.603740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.22319 -39.78057 -35.95258 -34.90609 -34.04467 -33.57569 -31.79825 -30.88955 -28.76056 -26.89759 -26.41249 -24.40295 -23.33159 -23.07493 -21.61384 -20.79733 -20.02716 -18.50424 -18.11588 -16.94520 -16.59533 -16.18877 -15.84217 -15.35422 -15.27015 -15.09488 -14.79457 -14.37409 -14.03284 -13.86936 -13.84356 -13.66264 -13.31872 -13.06380 -13.02222 -12.87298 -12.80706 -12.49024 -12.40307 -12.31849 -12.06009 -11.82932 -11.66016 -11.40392 -10.94821 -10.84700 -10.74342 -10.61614 -10.36833 -9.34362 -8.96295 -8.06906 -6.19775 1.04467 1.40732 1.41761 1.49238 2.09386 2.19255 2.43335 3.17319 3.20271 3.45561 3.96323 4.03703 4.10242 4.21397 4.23782 4.28598 4.34576 4.40997 4.50243 4.63057 4.70000 4.73748 4.77327 4.86704 4.92560 4.94628 4.97843 4.99438 5.08235 5.11170 5.19398 5.23094 5.25069 5.37065 5.40003 5.52148 5.64483 5.84226 5.95737 6.11877 6.20292 6.30403 6.47292 6.57816 6.92396 7.17549 7.47569 8.97593 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.005460 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.338163 B = 5126.536371 C = 5594.195958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 C 0.205 3.795 4 N -0.526 5.526 5 C -0.012 4.012 6 C -0.070 4.070 7 C -0.052 4.052 8 C 0.130 3.870 9 N -0.531 5.531 10 C 0.070 3.930 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.051 3.949 14 H -0.001 1.001 15 C -0.531 4.531 16 H 0.049 0.951 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.082 3.918 24 N -0.550 5.550 25 H 0.430 0.570 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.014 0.986 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.009 0.991 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 -17.409 -2.410 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.059 4.059 4 N -0.248 5.248 5 C -0.141 4.141 6 C -0.128 4.128 7 C -0.169 4.169 8 C 0.001 3.999 9 N -0.253 5.253 10 C -0.058 4.058 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.033 3.967 14 H 0.017 0.983 15 C -0.570 4.570 16 H 0.067 0.933 17 C -0.182 4.182 18 N -0.555 5.555 19 Si 0.773 3.227 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.045 4.045 24 N -0.156 5.156 25 H 0.271 0.729 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.032 0.968 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.135 -16.983 -2.732 19.028 hybrid contribution -0.998 0.292 0.209 1.061 sum 7.137 -16.691 -2.523 18.327 Atomic orbital electron populations 1.21645 0.94052 1.02863 1.01310 1.20097 0.96506 0.85118 1.05191 1.23864 0.94890 0.98378 0.88810 1.70019 1.26091 1.00453 1.28196 1.20717 1.00087 0.95495 0.97763 1.20297 1.02421 0.91277 0.98811 1.22110 1.07445 0.86899 1.00471 1.20897 0.93278 0.90254 0.95451 1.62388 1.24452 1.27431 1.10997 1.21985 0.97107 0.94280 0.92440 1.21585 0.97728 0.98112 0.97475 1.21444 0.96568 0.97138 0.98968 1.18618 0.93124 0.92302 0.92690 0.98302 1.21469 1.17811 1.21293 0.96416 0.93314 1.25654 0.99289 0.97454 0.95844 1.70017 1.40519 1.33246 1.11703 0.85776 0.79523 0.78437 0.78925 1.20237 1.20797 1.19381 1.22267 0.91737 0.95143 0.95393 1.43075 1.37184 1.09870 1.25439 0.72941 0.93696 0.89276 0.94225 0.88176 0.87554 0.92509 0.91742 0.90124 0.87655 0.88081 0.96795 0.88891 0.91613 0.92510 0.97176 0.92444 0.93138 0.91799 0.96148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.87 71.98 0.71 -1.95 16 2 C -0.03 -0.51 6.56 29.85 0.20 -0.32 16 3 C 0.21 5.35 7.43 138.13 1.03 6.38 16 4 N -0.53 -17.98 11.21 -176.29 -1.98 -19.95 16 5 C -0.01 -0.39 5.97 41.39 0.25 -0.15 16 6 C -0.07 -2.35 8.28 71.24 0.59 -1.76 16 7 C -0.05 -1.49 5.07 40.95 0.21 -1.28 16 8 C 0.13 3.41 5.67 85.56 0.49 3.90 16 9 N -0.53 -18.14 4.86 -900.95 -4.38 -22.52 16 10 C 0.07 2.25 5.14 86.33 0.44 2.70 16 11 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 12 C -0.10 -5.08 5.02 30.68 0.15 -4.93 16 13 C 0.05 2.66 2.26 -11.49 -0.03 2.63 16 14 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 15 C -0.53 -30.16 8.57 25.60 0.22 -29.94 16 16 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 17 C 0.02 0.92 5.30 84.65 0.45 1.37 16 18 N -0.92 -54.05 11.35 21.45 0.24 -53.81 16 19 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.08 3.46 2.57 86.33 0.22 3.68 16 24 N -0.55 -12.70 6.14 -174.61 -1.07 -13.78 16 25 H 0.43 6.60 8.96 -92.71 -0.83 5.76 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 2.20 6.12 -2.39 -0.01 2.18 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.37 6.78 -2.38 -0.02 2.36 16 34 H 0.11 2.08 8.06 -2.39 -0.02 2.06 16 35 H 0.10 2.53 7.51 -2.38 -0.02 2.52 16 36 H 0.01 0.48 7.47 -2.39 -0.02 0.46 16 37 H 0.09 2.31 8.06 -2.39 -0.02 2.30 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.06 3.20 6.15 -2.39 -0.01 3.18 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.06 2.66 6.42 -2.39 -0.02 2.64 16 44 H 0.02 0.93 5.16 -2.39 -0.01 0.92 16 Total: -1.00 -69.90 336.40 0.11 -69.79 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.16 Total: 17.04 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 5.11 Total: -23.73 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -7.18 Total: -110.06 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.90 0.11 -69.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203243542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.281 kcal (2) G-P(sol) polarization free energy of solvation -69.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds