Wall clock time and date at job start Mon Mar 30 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47129 * 2 1 4 4 N 1.30500 * 125.64849 * 305.27406 * 3 2 1 5 5 C 1.34125 * 109.25480 * 180.14868 * 4 3 2 6 6 C 1.50703 * 125.98994 * 179.88186 * 5 4 3 7 7 C 1.34666 * 108.01967 * 359.61231 * 5 4 3 8 8 C 1.50707 * 126.59170 * 180.24422 * 7 5 4 9 9 N 1.46901 * 109.46558 * 80.00454 * 8 7 5 10 10 C 1.46849 * 110.99834 * 66.05081 * 9 8 7 11 11 C 1.53038 * 109.52201 * 185.83700 * 10 9 8 12 12 C 1.53118 * 109.27967 * 300.81633 * 11 10 9 13 13 C 1.53127 * 109.15952 * 57.65689 * 12 11 10 14 14 H 1.09002 * 109.50271 * 62.32269 * 13 12 11 15 15 C 1.50696 * 109.50452 * 182.40616 * 13 12 11 16 16 H 1.07998 * 120.00199 * 119.99933 * 15 13 12 17 17 C 1.37882 * 119.99749 * 300.00160 * 15 13 12 18 18 N 1.31518 * 119.99880 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 120.00009 * 359.97438 * 17 15 13 20 20 H 1.48507 * 109.46923 * 90.00589 * 19 17 15 21 21 H 1.48501 * 109.47243 * 210.00459 * 19 17 15 22 22 H 1.48498 * 109.47286 * 330.00685 * 19 17 15 23 23 C 1.46848 * 110.99823 * 190.25405 * 9 8 7 24 24 N 1.35042 * 125.64858 * 124.99814 * 3 2 1 25 25 H 0.97000 * 126.40122 * 0.02562 * 24 3 2 26 26 H 1.08998 * 109.47086 * 300.00269 * 1 2 3 27 27 H 1.09000 * 109.47004 * 60.00154 * 1 2 3 28 28 H 1.09000 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47086 * 239.99731 * 2 1 3 30 30 H 1.09000 * 109.47004 * 119.99846 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.68681 * 6 5 4 32 32 H 1.09001 * 109.46980 * 149.68781 * 6 5 4 33 33 H 1.09004 * 109.47113 * 29.68762 * 6 5 4 34 34 H 1.08996 * 109.47396 * 200.00396 * 8 7 5 35 35 H 1.09000 * 109.47051 * 320.00890 * 8 7 5 36 36 H 1.09005 * 109.46123 * 305.85018 * 10 9 8 37 37 H 1.08993 * 109.46655 * 65.82405 * 10 9 8 38 38 H 1.08999 * 109.50625 * 60.76288 * 11 10 9 39 39 H 1.09005 * 109.50438 * 180.87785 * 11 10 9 40 40 H 1.09003 * 109.52433 * 177.55493 * 12 11 10 41 41 H 1.08992 * 109.52716 * 297.68984 * 12 11 10 42 42 H 0.96996 * 120.00055 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.46407 * 294.17964 * 23 9 8 44 44 H 1.09001 * 109.46255 * 54.15110 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7085 2.3420 -0.8658 5 6 2.3461 3.4814 -0.5586 6 6 2.2460 4.7829 -1.3117 7 6 3.0867 3.2601 0.5441 8 6 3.9651 4.2595 1.2518 9 7 3.1362 5.1238 2.1026 10 6 2.5275 4.3571 3.1971 11 6 1.5601 5.2536 3.9733 12 6 2.3241 6.4573 4.5318 13 6 2.9885 7.2111 3.3764 14 1 2.2219 7.5898 2.7003 15 6 3.7913 8.3634 3.9229 16 1 4.8552 8.4132 3.7441 17 6 3.1674 9.3541 4.6512 18 7 3.8679 10.3600 5.1278 19 14 1.3271 9.2682 4.9599 20 1 1.0707 8.5251 6.2198 21 1 0.7800 10.6438 5.0765 22 1 0.6677 8.5674 3.8289 23 6 3.9145 6.2577 2.6175 24 7 2.8881 1.9531 0.8989 25 1 3.2877 1.4947 1.6546 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0157 4.8168 -2.0827 32 1 2.3869 5.6142 -0.6208 33 1 1.2628 4.8593 -1.7762 34 1 4.6920 3.7315 1.8690 35 1 4.4885 4.8690 0.5151 36 1 1.9838 3.5064 2.7860 37 1 3.3084 3.9991 3.8679 38 1 0.7711 5.6009 3.3064 39 1 1.1202 4.6886 4.7952 40 1 1.6308 7.1210 5.0486 41 1 3.0871 6.1127 5.2297 42 1 3.4290 11.0571 5.6398 43 1 4.6889 5.8907 3.2909 44 1 4.3782 6.7876 1.7854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203243543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:06 Heat of formation + Delta-G solvation = 42.896723 kcal Electronic energy + Delta-G solvation = -22177.732961 eV Core-core repulsion = 19130.100606 eV Total energy + Delta-G solvation = -3047.632355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14000 -38.46256 -34.64414 -33.70213 -32.89381 -32.17029 -30.37983 -30.18355 -27.57332 -25.51416 -24.95503 -23.38125 -22.22533 -21.29016 -20.72891 -19.39134 -18.90709 -17.21848 -16.74034 -15.91682 -15.35806 -14.73840 -14.56276 -14.34380 -14.05486 -13.72387 -13.60425 -13.16529 -12.84520 -12.74059 -12.61756 -12.33824 -12.28622 -12.14996 -11.98499 -11.66927 -11.54081 -11.36287 -11.14469 -11.07155 -10.54912 -10.11276 -9.99804 -9.87732 -9.74338 -9.69144 -9.15622 -8.95319 -8.52264 -8.06704 -7.84772 -6.07643 -4.06921 2.02422 3.04810 3.13793 3.28286 3.40340 3.43733 4.28766 4.39943 4.42323 4.71936 4.93903 5.02736 5.08828 5.17394 5.23717 5.38568 5.44138 5.47745 5.54623 5.59683 5.66636 5.76541 5.76604 5.92461 5.94430 6.03153 6.09173 6.21737 6.22823 6.25872 6.27684 6.33190 6.44163 6.57478 6.76878 6.81271 6.90662 7.17140 7.34448 7.39995 7.51370 7.63285 7.84129 8.17320 8.50841 8.95302 9.55265 11.05554 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.004214 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.890138 B = 6642.159089 C = 6902.308251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.033 4.033 3 C 0.202 3.798 4 N -0.486 5.486 5 C 0.025 3.975 6 C -0.069 4.069 7 C -0.012 4.012 8 C 0.131 3.869 9 N -0.533 5.533 10 C 0.066 3.934 11 C -0.118 4.118 12 C -0.122 4.122 13 C 0.021 3.979 14 H 0.037 0.963 15 C -0.514 4.514 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.298 1.298 22 H -0.263 1.263 23 C 0.077 3.923 24 N -0.566 5.566 25 H 0.413 0.587 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.096 0.904 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.263 0.737 43 H 0.027 0.973 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -19.713 -8.169 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.061 4.061 4 N -0.207 5.207 5 C -0.105 4.105 6 C -0.126 4.126 7 C -0.126 4.126 8 C 0.002 3.998 9 N -0.258 5.258 10 C -0.062 4.062 11 C -0.156 4.156 12 C -0.159 4.159 13 C 0.002 3.998 14 H 0.055 0.945 15 C -0.553 4.553 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.540 5.540 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.188 1.188 23 C -0.049 4.049 24 N -0.170 5.170 25 H 0.250 0.750 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.051 -19.404 -9.053 21.792 hybrid contribution 0.456 -0.458 2.029 2.130 sum -3.595 -19.861 -7.024 21.371 Atomic orbital electron populations 1.21667 0.93526 1.01676 1.03191 1.19887 0.97089 0.87249 1.02981 1.23079 0.95578 0.97436 0.90036 1.70071 1.24810 0.99642 1.26142 1.20462 0.98384 0.95151 0.96457 1.20068 1.01931 0.91661 0.98985 1.20917 1.06718 0.84842 1.00152 1.20387 0.91579 0.91870 0.95944 1.61994 1.33907 1.09256 1.20631 1.21960 0.96855 0.95711 0.91700 1.21634 0.98247 0.97305 0.98420 1.22029 0.98565 0.95479 0.99874 1.19156 0.95069 0.92983 0.92598 0.94500 1.20987 0.96259 1.04623 1.33406 0.90931 1.24978 0.97917 0.95025 0.95131 1.69897 1.36041 1.11636 1.36457 0.86837 0.86408 0.75937 0.79044 1.20802 1.22589 1.18760 1.22118 0.94846 0.90063 0.97881 1.43140 1.37835 1.10681 1.25341 0.74986 0.92704 0.91277 0.92147 0.89563 0.90857 0.92025 0.89979 0.91654 0.94926 0.88551 0.92403 0.95723 0.91755 0.92985 0.93515 0.92630 0.92675 0.95506 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.86 37.16 0.37 -0.81 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.20 2.45 7.43 -155.42 -1.16 1.29 16 4 N -0.49 -7.29 11.21 -7.07 -0.08 -7.36 16 5 C 0.02 0.37 7.09 -82.85 -0.59 -0.22 16 6 C -0.07 -0.93 10.22 36.01 0.37 -0.56 16 7 C -0.01 -0.16 5.61 -81.60 -0.46 -0.62 16 8 C 0.13 1.81 5.05 -4.97 -0.03 1.78 16 9 N -0.53 -8.87 4.65 -236.11 -1.10 -9.97 16 10 C 0.07 1.05 5.31 -3.83 -0.02 1.03 16 11 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 12 C -0.12 -2.61 4.73 -26.60 -0.13 -2.74 16 13 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 14 H 0.04 0.90 7.21 -51.93 -0.37 0.53 16 15 C -0.51 -14.16 9.15 -34.44 -0.31 -14.48 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 18 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 19 Si 0.89 22.08 24.35 -169.99 -4.14 17.94 16 20 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 21 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 23 C 0.08 1.50 4.68 -3.83 -0.02 1.48 16 24 N -0.57 -6.46 5.85 -6.54 -0.04 -6.50 16 25 H 0.41 3.53 8.96 -40.82 -0.37 3.17 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 35 H 0.10 1.27 7.98 -51.93 -0.41 0.85 16 36 H 0.06 0.87 6.87 -51.93 -0.36 0.51 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 1.07 3.34 -51.93 -0.17 0.89 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -31.74 342.02 -9.61 -41.35 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.60 Total: 0.38 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.58 Total: -14.30 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.44 Total: -50.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.74 -9.61 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203243543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.252 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds