Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47129 * 2 1 4 4 N 1.30500 * 125.64849 * 305.27406 * 3 2 1 5 5 C 1.34125 * 109.25480 * 180.14868 * 4 3 2 6 6 C 1.50703 * 125.98994 * 179.88186 * 5 4 3 7 7 C 1.34666 * 108.01967 * 359.61231 * 5 4 3 8 8 C 1.50707 * 126.59170 * 180.24422 * 7 5 4 9 9 N 1.46901 * 109.46558 * 80.00454 * 8 7 5 10 10 C 1.46849 * 110.99834 * 66.05081 * 9 8 7 11 11 C 1.53038 * 109.52201 * 185.83700 * 10 9 8 12 12 C 1.53118 * 109.27967 * 300.81633 * 11 10 9 13 13 C 1.53127 * 109.15952 * 57.65689 * 12 11 10 14 14 H 1.09002 * 109.50271 * 62.32269 * 13 12 11 15 15 C 1.50696 * 109.50452 * 182.40616 * 13 12 11 16 16 H 1.07998 * 120.00199 * 119.99933 * 15 13 12 17 17 C 1.37882 * 119.99749 * 300.00160 * 15 13 12 18 18 N 1.31518 * 119.99880 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 120.00009 * 359.97438 * 17 15 13 20 20 H 1.48507 * 109.46923 * 90.00589 * 19 17 15 21 21 H 1.48501 * 109.47243 * 210.00459 * 19 17 15 22 22 H 1.48498 * 109.47286 * 330.00685 * 19 17 15 23 23 C 1.46848 * 110.99823 * 190.25405 * 9 8 7 24 24 N 1.35042 * 125.64858 * 124.99814 * 3 2 1 25 25 H 0.97000 * 126.40122 * 0.02562 * 24 3 2 26 26 H 1.08998 * 109.47086 * 300.00269 * 1 2 3 27 27 H 1.09000 * 109.47004 * 60.00154 * 1 2 3 28 28 H 1.09000 * 109.46906 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47086 * 239.99731 * 2 1 3 30 30 H 1.09000 * 109.47004 * 119.99846 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.68681 * 6 5 4 32 32 H 1.09001 * 109.46980 * 149.68781 * 6 5 4 33 33 H 1.09004 * 109.47113 * 29.68762 * 6 5 4 34 34 H 1.08996 * 109.47396 * 200.00396 * 8 7 5 35 35 H 1.09000 * 109.47051 * 320.00890 * 8 7 5 36 36 H 1.09005 * 109.46123 * 305.85018 * 10 9 8 37 37 H 1.08993 * 109.46655 * 65.82405 * 10 9 8 38 38 H 1.08999 * 109.50625 * 60.76288 * 11 10 9 39 39 H 1.09005 * 109.50438 * 180.87785 * 11 10 9 40 40 H 1.09003 * 109.52433 * 177.55493 * 12 11 10 41 41 H 1.08992 * 109.52716 * 297.68984 * 12 11 10 42 42 H 0.96996 * 120.00055 * 179.97438 * 18 17 15 43 43 H 1.08991 * 109.46407 * 294.17964 * 23 9 8 44 44 H 1.09001 * 109.46255 * 54.15110 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7085 2.3420 -0.8658 5 6 2.3461 3.4814 -0.5586 6 6 2.2460 4.7829 -1.3117 7 6 3.0867 3.2601 0.5441 8 6 3.9651 4.2595 1.2518 9 7 3.1362 5.1238 2.1026 10 6 2.5275 4.3571 3.1971 11 6 1.5601 5.2536 3.9733 12 6 2.3241 6.4573 4.5318 13 6 2.9885 7.2111 3.3764 14 1 2.2219 7.5898 2.7003 15 6 3.7913 8.3634 3.9229 16 1 4.8552 8.4132 3.7441 17 6 3.1674 9.3541 4.6512 18 7 3.8679 10.3600 5.1278 19 14 1.3271 9.2682 4.9599 20 1 1.0707 8.5251 6.2198 21 1 0.7800 10.6438 5.0765 22 1 0.6677 8.5674 3.8289 23 6 3.9145 6.2577 2.6175 24 7 2.8881 1.9531 0.8989 25 1 3.2877 1.4947 1.6546 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.0157 4.8168 -2.0827 32 1 2.3869 5.6142 -0.6208 33 1 1.2628 4.8593 -1.7762 34 1 4.6920 3.7315 1.8690 35 1 4.4885 4.8690 0.5151 36 1 1.9838 3.5064 2.7860 37 1 3.3084 3.9991 3.8679 38 1 0.7711 5.6009 3.3064 39 1 1.1202 4.6886 4.7952 40 1 1.6308 7.1210 5.0486 41 1 3.0871 6.1127 5.2297 42 1 3.4290 11.0571 5.6398 43 1 4.6889 5.8907 3.2909 44 1 4.3782 6.7876 1.7854 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203243543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 21.766749 kcal Electronic energy + Delta-G solvation = -22178.649225 eV Core-core repulsion = 19130.100606 eV Total energy + Delta-G solvation = -3048.548619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.11175 -39.92174 -35.99639 -34.85564 -34.08535 -33.68974 -32.02720 -31.32371 -28.72460 -26.85643 -26.49500 -24.44444 -23.50449 -22.88766 -21.62575 -20.58716 -20.34927 -18.83597 -18.14124 -17.33063 -16.56117 -16.11820 -15.79345 -15.47473 -15.32427 -15.06205 -14.84671 -14.80279 -14.36955 -13.83143 -13.79373 -13.68733 -13.58735 -13.15967 -13.01551 -12.93932 -12.73596 -12.71081 -12.39412 -12.26447 -11.99933 -11.91204 -11.77949 -11.46257 -11.03257 -10.88400 -10.84024 -10.73086 -10.61815 -9.25835 -8.98335 -8.29912 -6.32674 1.03804 1.29150 1.36663 1.47046 2.11704 2.17552 2.32739 3.06295 3.11574 3.48083 3.87258 3.94987 4.01514 4.08814 4.20335 4.28789 4.31221 4.40465 4.41471 4.55724 4.56557 4.63955 4.74855 4.76097 4.76992 4.91549 4.92746 5.00361 5.02110 5.05018 5.10212 5.17242 5.20595 5.27283 5.33204 5.42232 5.44425 5.63285 5.72463 5.88326 6.13601 6.19860 6.34894 6.57789 6.74964 7.20086 7.33142 8.86817 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.004214 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.890138 B = 6642.159089 C = 6902.308251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C 0.210 3.790 4 N -0.522 5.522 5 C 0.001 3.999 6 C -0.065 4.065 7 C -0.017 4.017 8 C 0.136 3.864 9 N -0.540 5.540 10 C 0.070 3.930 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.020 3.980 14 H 0.023 0.977 15 C -0.515 4.515 16 H 0.037 0.963 17 C 0.015 3.985 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.301 1.301 22 H -0.251 1.251 23 C 0.090 3.910 24 N -0.556 5.556 25 H 0.428 0.572 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.052 0.948 42 H 0.265 0.735 43 H 0.023 0.977 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -22.871 -8.109 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.054 4.054 4 N -0.244 5.244 5 C -0.128 4.128 6 C -0.122 4.122 7 C -0.133 4.133 8 C 0.008 3.992 9 N -0.265 5.265 10 C -0.058 4.058 11 C -0.151 4.151 12 C -0.158 4.158 13 C 0.001 3.999 14 H 0.041 0.959 15 C -0.554 4.554 16 H 0.055 0.945 17 C -0.182 4.182 18 N -0.590 5.590 19 Si 0.776 3.224 20 H -0.194 1.194 21 H -0.229 1.229 22 H -0.175 1.175 23 C -0.037 4.037 24 N -0.161 5.161 25 H 0.268 0.732 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.113 -22.599 -8.990 24.853 hybrid contribution 0.857 0.475 1.949 2.182 sum -4.255 -22.124 -7.041 23.604 Atomic orbital electron populations 1.21634 0.93628 1.02824 1.01650 1.20107 0.96862 0.85156 1.05021 1.23806 0.94311 0.98369 0.88916 1.70069 1.26135 1.00346 1.27836 1.20731 0.99121 0.95622 0.97325 1.20017 1.02102 0.91160 0.98970 1.20744 1.06827 0.85708 0.99993 1.20347 0.91491 0.91700 0.95674 1.61893 1.34135 1.09496 1.20972 1.21950 0.96825 0.95504 0.91530 1.21594 0.97972 0.96241 0.99274 1.21912 0.98439 0.96620 0.98838 1.19066 0.94856 0.92618 0.93341 0.95860 1.21324 0.95203 1.06210 1.32662 0.94450 1.25788 1.02502 0.94715 0.95194 1.70038 1.38087 1.12819 1.38079 0.85848 0.80971 0.75885 0.79717 1.19424 1.22850 1.17541 1.21791 0.93996 0.90617 0.97292 1.43085 1.37491 1.09894 1.25663 0.73171 0.93676 0.93352 0.89670 0.88424 0.87849 0.90884 0.91027 0.92074 0.93231 0.88309 0.90762 0.94664 0.92552 0.90268 0.94915 0.92954 0.92608 0.95862 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.86 71.98 0.71 -1.24 16 2 C -0.03 -0.42 6.56 29.85 0.20 -0.23 16 3 C 0.21 4.54 7.43 138.13 1.03 5.57 16 4 N -0.52 -14.90 11.21 -176.28 -1.98 -16.88 16 5 C 0.00 0.03 7.09 41.39 0.29 0.32 16 6 C -0.06 -1.72 10.22 71.24 0.73 -0.99 16 7 C -0.02 -0.44 5.61 40.95 0.23 -0.21 16 8 C 0.14 3.46 5.05 85.56 0.43 3.89 16 9 N -0.54 -16.95 4.65 -900.91 -4.19 -21.13 16 10 C 0.07 2.01 5.31 86.33 0.46 2.47 16 11 C -0.11 -3.70 6.09 30.65 0.19 -3.51 16 12 C -0.12 -4.97 4.73 30.68 0.15 -4.83 16 13 C 0.02 0.94 1.85 -11.48 -0.02 0.92 16 14 H 0.02 1.13 7.21 -2.39 -0.02 1.12 16 15 C -0.52 -29.09 9.15 25.60 0.23 -28.86 16 16 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 17 C 0.02 0.87 5.45 84.66 0.46 1.34 16 18 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 19 Si 0.95 45.85 24.35 68.60 1.67 47.52 16 20 H -0.27 -12.32 6.89 99.48 0.69 -11.63 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.25 -11.55 6.53 99.48 0.65 -10.90 16 23 C 0.09 3.44 4.68 86.33 0.40 3.84 16 24 N -0.56 -10.96 5.85 -174.60 -1.02 -11.98 16 25 H 0.43 5.63 8.96 -92.71 -0.83 4.80 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 2.02 7.89 -2.39 -0.02 2.00 16 33 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.10 2.45 7.98 -2.39 -0.02 2.43 16 36 H 0.07 1.94 6.87 -2.38 -0.02 1.92 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.03 1.43 3.34 -2.39 -0.01 1.43 16 41 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 2.56 8.01 -2.39 -0.02 2.54 16 Total: -1.00 -69.98 342.02 0.34 -69.64 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.07 Total: 13.55 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 5.48 Total: -21.52 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -6.88 Total: -109.18 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.52 kcal Total: -69.98 0.34 -69.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203243543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.406 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds