Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47439 * 2 1 4 4 C 1.46903 * 110.99782 * 299.33066 * 3 2 1 5 5 C 1.50698 * 109.47315 * 293.55669 * 4 3 2 6 6 H 1.07999 * 120.00257 * 354.96691 * 5 4 3 7 7 C 1.37875 * 119.99968 * 174.96710 * 5 4 3 8 8 N 1.31512 * 119.99976 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46841 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47318 * 119.99972 * 9 7 5 12 12 H 1.48495 * 109.47148 * 240.00016 * 9 7 5 13 13 C 1.46896 * 111.00071 * 63.28543 * 3 2 1 14 14 C 1.50698 * 109.47194 * 66.04932 * 13 3 2 15 15 C 1.38295 * 119.94301 * 260.00191 * 14 13 3 16 16 C 1.38114 * 120.05294 * 179.97438 * 15 14 13 17 17 C 1.38758 * 119.94862 * 0.02562 * 16 15 14 18 18 O 1.35901 * 120.05588 * 180.02562 * 17 16 15 19 19 C 1.42902 * 116.99947 * 359.97438 * 18 17 16 20 20 C 1.38705 * 119.88726 * 359.97438 * 17 16 15 21 21 C 1.50696 * 120.02761 * 179.97438 * 20 17 16 22 22 C 1.38175 * 119.94311 * 359.97438 * 20 17 16 23 23 C 1.50698 * 119.96945 * 179.97438 * 22 20 17 24 24 H 1.09003 * 109.47444 * 180.63596 * 1 2 3 25 25 H 1.09003 * 109.47359 * 300.63599 * 1 2 3 26 26 H 1.09003 * 109.47295 * 60.63648 * 1 2 3 27 27 H 1.09003 * 109.47437 * 239.99768 * 2 1 3 28 28 H 1.08999 * 109.47297 * 119.99916 * 2 1 3 29 29 H 1.09001 * 109.46920 * 53.55938 * 4 3 2 30 30 H 1.09006 * 109.47196 * 173.55385 * 4 3 2 31 31 H 0.97001 * 119.99656 * 180.02562 * 8 7 5 32 32 H 1.09009 * 109.47135 * 306.04682 * 13 3 2 33 33 H 1.08999 * 109.47161 * 186.04640 * 13 3 2 34 34 H 1.07997 * 119.96709 * 359.72353 * 15 14 13 35 35 H 1.08011 * 120.02774 * 179.97438 * 16 15 14 36 36 H 1.09003 * 109.46607 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.46787 * 299.99652 * 19 18 17 38 38 H 1.08994 * 109.47209 * 60.00321 * 19 18 17 39 39 H 1.08997 * 109.47293 * 270.02163 * 21 20 17 40 40 H 1.09004 * 109.47163 * 30.02752 * 21 20 17 41 41 H 1.09008 * 109.47148 * 150.02600 * 21 20 17 42 42 H 1.09004 * 109.47483 * 270.02221 * 23 22 20 43 43 H 1.09003 * 109.47477 * 30.02770 * 23 22 20 44 44 H 1.09004 * 109.46937 * 150.02777 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5618 2.1052 -1.1957 5 6 2.2049 1.5064 -2.4199 6 1 2.9469 0.7287 -2.3145 7 6 1.8462 1.9514 -3.6746 8 7 0.9425 2.8981 -3.8030 9 14 2.6430 1.2087 -5.1922 10 1 3.6200 0.1691 -4.7797 11 1 1.5978 0.5941 -6.0495 12 1 3.3451 2.2728 -5.9536 13 6 1.6139 2.0868 1.2250 14 6 2.3016 1.4635 2.4123 15 6 1.6191 0.5651 3.2121 16 6 2.2472 -0.0079 4.3005 17 6 3.5640 0.3187 4.5915 18 8 4.1844 -0.2442 5.6616 19 6 3.4207 -1.1641 6.4443 20 6 4.2464 1.2200 3.7878 21 6 5.6763 1.5775 4.1013 22 6 3.6138 1.7898 2.6994 23 6 4.3544 2.7695 1.8261 24 1 -0.3634 -1.0276 0.0114 25 1 -0.3634 0.5237 0.8842 26 1 -0.3634 0.5039 -0.8956 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.4780 2.0220 -1.2771 30 1 1.8405 3.1560 -1.1159 31 1 0.6899 3.2109 -4.6858 32 1 0.5337 2.0080 1.3481 33 1 1.8957 3.1372 1.1522 34 1 0.5928 0.3146 2.9877 35 1 1.7137 -0.7092 4.9251 36 1 4.0328 -1.5383 7.2650 37 1 2.5437 -0.6574 6.8474 38 1 3.1030 -1.9977 5.8181 39 1 5.6975 2.4376 4.7705 40 1 6.1655 0.7305 4.5824 41 1 6.2004 1.8230 3.1775 42 1 4.2093 3.7797 2.2092 43 1 5.4175 2.5286 1.8302 44 1 3.9721 2.7091 0.8071 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203724428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = -33.772766 kcal Electronic energy + Delta-G solvation = -22151.950383 eV Core-core repulsion = 19068.700639 eV Total energy + Delta-G solvation = -3083.249744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36774 -39.51114 -37.96865 -34.80708 -34.21855 -32.90050 -30.94968 -29.63399 -28.40009 -28.01061 -26.86128 -25.80985 -24.89264 -22.10644 -21.71762 -20.51565 -18.49280 -18.32786 -17.70694 -16.86041 -16.64968 -16.42627 -15.91081 -15.89125 -15.15433 -14.78911 -14.76987 -14.43375 -14.31691 -13.84391 -13.65378 -13.49719 -13.29584 -13.13953 -13.06570 -12.87850 -12.69667 -12.58846 -12.58025 -12.43530 -12.24494 -12.12756 -11.74843 -11.67945 -11.52614 -11.38350 -11.17862 -10.57137 -9.45501 -8.98001 -8.76939 -8.15641 -6.24395 0.44703 0.50598 1.40902 1.42219 1.55154 2.42371 2.44130 2.75538 3.16831 3.55212 3.85914 3.91464 4.04076 4.22145 4.30630 4.33371 4.39304 4.43768 4.48903 4.51637 4.61049 4.65576 4.72637 4.75803 4.79917 4.83856 4.93071 4.98087 4.99717 5.03203 5.08718 5.26090 5.26983 5.38990 5.44443 5.45627 5.53780 5.61521 5.71594 5.88011 5.94181 6.13287 6.43185 6.53209 6.72073 6.93107 7.44863 8.94586 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.004233 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.413910 B = 6613.484278 C = 7032.523722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 N -0.530 5.530 4 C 0.204 3.796 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.097 3.903 14 C -0.113 4.113 15 C -0.082 4.082 16 C -0.210 4.210 17 C 0.115 3.885 18 O -0.329 6.329 19 C 0.019 3.981 20 C -0.136 4.136 21 C -0.100 4.100 22 C -0.036 4.036 23 C -0.120 4.120 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.034 0.966 27 H 0.055 0.945 28 H 0.072 0.928 29 H -0.019 1.019 30 H -0.002 1.002 31 H 0.262 0.738 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -6.423 19.669 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.063 4.063 3 N -0.253 5.253 4 C 0.078 3.922 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.205 1.205 13 C -0.031 4.031 14 C -0.114 4.114 15 C -0.101 4.101 16 C -0.229 4.229 17 C 0.070 3.930 18 O -0.243 6.243 19 C -0.075 4.075 20 C -0.136 4.136 21 C -0.157 4.157 22 C -0.037 4.037 23 C -0.176 4.176 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.090 0.910 29 H -0.001 1.001 30 H 0.016 0.984 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.166 0.834 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.684 -6.306 19.598 21.114 hybrid contribution -1.194 -0.122 -1.133 1.650 sum 3.490 -6.429 18.466 19.862 Atomic orbital electron populations 1.22258 0.98353 1.02090 1.00877 1.21890 0.92900 0.90487 1.00988 1.62235 1.59443 1.02433 1.01235 1.19434 0.92940 0.92444 0.87379 1.21442 1.22188 1.20414 0.91110 0.92418 1.25806 0.95765 0.95624 1.02186 1.70084 1.33177 1.30122 1.24116 0.85440 0.78382 0.78425 0.79015 1.18987 1.20585 1.20528 1.20906 0.96418 0.97401 0.88337 1.19596 0.94658 1.00132 0.97003 1.20936 0.99973 0.95210 0.93976 1.21303 0.94536 1.05692 1.01358 1.18885 0.91518 0.94151 0.88457 1.86018 1.41817 1.58228 1.38228 1.23305 0.97689 0.91480 0.95054 1.19296 0.98271 0.99847 0.96219 1.20632 0.90855 1.01955 1.02211 1.19545 0.93255 0.96817 0.94086 1.20912 1.00250 0.97273 0.99168 0.91082 0.92310 0.94701 0.92634 0.90981 1.00148 0.98387 0.92875 0.94650 0.91635 0.85254 0.83382 0.86270 0.91893 0.92173 0.90793 0.91448 0.90849 0.90541 0.90297 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.36 9.25 71.98 0.67 -5.70 16 2 C 0.07 2.57 5.63 86.30 0.49 3.06 16 3 N -0.53 -22.82 4.02 -905.38 -3.64 -26.47 16 4 C 0.20 10.75 4.50 85.56 0.38 11.14 16 5 C -0.51 -29.04 8.41 25.60 0.22 -28.83 16 6 H 0.06 3.26 7.33 -2.91 -0.02 3.24 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 9 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.10 3.56 4.03 85.56 0.34 3.91 16 14 C -0.11 -3.63 4.58 -19.85 -0.09 -3.72 16 15 C -0.08 -2.28 8.63 22.25 0.19 -2.08 16 16 C -0.21 -5.13 9.04 22.36 0.20 -4.92 16 17 C 0.12 3.02 6.66 22.51 0.15 3.17 16 18 O -0.33 -7.43 9.54 -92.44 -0.88 -8.32 16 19 C 0.02 0.26 9.81 113.37 1.11 1.37 16 20 C -0.14 -3.80 5.89 -19.77 -0.12 -3.91 16 21 C -0.10 -2.29 9.38 71.23 0.67 -1.62 16 22 C -0.04 -1.13 5.88 -19.88 -0.12 -1.24 16 23 C -0.12 -3.60 8.85 71.24 0.63 -2.97 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.06 1.91 6.02 -2.39 -0.01 1.89 16 26 H 0.03 1.49 6.32 -2.39 -0.02 1.47 16 27 H 0.06 2.41 6.97 -2.39 -0.02 2.40 16 28 H 0.07 2.56 6.46 -2.39 -0.02 2.54 16 29 H -0.02 -1.08 6.01 -2.39 -0.01 -1.10 16 30 H 0.00 -0.11 7.92 -2.38 -0.02 -0.13 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.04 1.27 5.95 -2.38 -0.01 1.26 16 33 H 0.07 2.48 7.06 -2.39 -0.02 2.47 16 34 H 0.13 3.22 7.73 -2.91 -0.02 3.20 16 35 H 0.15 2.70 6.30 -2.90 -0.02 2.69 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 38 H 0.06 0.75 7.66 -2.39 -0.02 0.74 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.48 7.53 -2.39 -0.02 1.47 16 41 H 0.07 1.60 5.95 -2.38 -0.01 1.58 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 2.09 5.95 -2.39 -0.01 2.07 16 44 H 0.06 2.39 6.34 -2.39 -0.02 2.38 16 Total: -1.00 -65.11 339.74 3.96 -61.15 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.99 Total: 14.46 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 5.19 Total: -31.68 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -3.36 Total: -82.33 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.88 Total: -8.32 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.11 3.96 -61.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203724428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.375 kcal (2) G-P(sol) polarization free energy of solvation -65.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds