Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35318 * 126.13035 * 2 1 4 4 C 1.50701 * 126.03858 * 359.97438 * 3 2 1 5 5 N 1.46900 * 109.46814 * 54.30101 * 4 3 2 6 6 C 1.46897 * 110.99760 * 188.42089 * 5 4 3 7 7 C 1.50705 * 109.47252 * 162.07600 * 6 5 4 8 8 H 1.08000 * 119.99643 * 354.17298 * 7 6 5 9 9 C 1.37878 * 120.00013 * 174.18561 * 7 6 5 10 10 N 1.31506 * 119.99988 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99525 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47720 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47105 * 120.00003 * 11 9 7 14 14 H 1.48508 * 109.47084 * 239.99678 * 11 9 7 15 15 C 1.46903 * 111.00062 * 64.46548 * 5 4 3 16 16 C 1.54261 * 110.03266 * 26.24109 * 15 5 4 17 17 C 1.54969 * 104.15968 * 217.13488 * 16 15 5 18 18 C 1.54887 * 102.77431 * 37.88739 * 17 16 15 19 19 C 1.53871 * 110.03510 * 269.01947 * 15 5 4 20 20 C 1.39866 * 107.91995 * 179.97438 * 3 2 1 21 21 N 1.30833 * 108.20847 * 0.02562 * 20 3 2 22 22 N 1.34953 * 126.12554 * 179.97438 * 2 1 3 23 23 C 1.46503 * 126.03464 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47366 * 269.98034 * 1 2 3 25 25 H 1.09005 * 109.47169 * 29.97239 * 1 2 3 26 26 H 1.08996 * 109.47625 * 149.97783 * 1 2 3 27 27 H 1.09000 * 109.46774 * 174.29710 * 4 3 2 28 28 H 1.08995 * 109.47335 * 294.30096 * 4 3 2 29 29 H 1.09005 * 109.47118 * 282.06636 * 6 5 4 30 30 H 1.09001 * 109.47720 * 42.07060 * 6 5 4 31 31 H 0.97000 * 119.99747 * 180.02562 * 10 9 7 32 32 H 1.09002 * 110.01145 * 147.62935 * 15 5 4 33 33 H 1.09000 * 110.48746 * 335.78044 * 16 15 5 34 34 H 1.09000 * 110.48840 * 98.42763 * 16 15 5 35 35 H 1.08994 * 110.71903 * 279.57341 * 17 16 15 36 36 H 1.08997 * 110.92227 * 156.29129 * 17 16 15 37 37 H 1.08999 * 110.48355 * 203.40728 * 18 17 16 38 38 H 1.08998 * 110.60319 * 80.82171 * 18 17 16 39 39 H 1.09001 * 110.03346 * 238.57618 * 19 15 5 40 40 H 1.09001 * 110.02851 * 359.95551 * 19 15 5 41 41 H 1.08005 * 125.90058 * 179.97438 * 20 3 2 42 42 H 1.08995 * 109.47109 * 269.99485 * 23 22 2 43 43 H 1.08995 * 109.47277 * 30.00019 * 23 22 2 44 44 H 1.09002 * 109.46695 * 149.99571 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 -0.0005 5 7 0.9236 2.7464 1.1238 6 6 0.2985 4.0732 1.0419 7 6 -0.9287 4.1052 1.9160 8 1 -1.2692 3.2027 2.4019 9 6 -1.6169 5.2864 2.0952 10 7 -1.2021 6.3853 1.5037 11 14 -3.1385 5.3257 3.1781 12 1 -3.3936 3.9681 3.7230 13 1 -2.9245 6.2770 4.2981 14 1 -4.3075 5.7633 2.3735 15 6 1.6116 2.5671 2.4093 16 6 3.1182 2.8562 2.2473 17 6 3.8050 1.8170 3.1692 18 6 2.9285 0.5548 2.9750 19 6 1.4909 1.1046 2.8723 20 6 3.6334 0.6558 0.0006 21 7 3.6334 -0.6525 0.0004 22 7 2.3026 -1.0901 0.0005 23 6 1.8537 -2.4846 0.0006 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 2.7055 3.1865 0.1017 28 1 1.3298 2.7437 -0.9373 29 1 1.0060 4.8298 1.3814 30 1 0.0148 4.2782 0.0096 31 1 -1.6861 7.2164 1.6301 32 1 1.1822 3.2325 3.1583 33 1 3.4256 2.7094 1.2119 34 1 3.3496 3.8697 2.5749 35 1 3.7815 2.1476 4.2075 36 1 4.8295 1.6289 2.8482 37 1 3.0221 -0.1103 3.8334 38 1 3.2042 0.0338 2.0581 39 1 1.0036 1.0603 3.8463 40 1 0.9211 0.5282 2.1435 41 1 4.5084 1.2890 0.0004 42 1 1.7421 -2.8303 1.0282 43 1 0.8955 -2.5580 -0.5136 44 1 2.5898 -3.1032 -0.5130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204569919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = 98.074455 kcal Electronic energy + Delta-G solvation = -23423.333495 eV Core-core repulsion = 20378.093827 eV Total energy + Delta-G solvation = -3045.239668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38019 -38.33653 -34.57184 -33.34171 -32.62863 -31.51727 -28.89828 -27.71854 -27.30491 -26.43301 -25.68617 -23.53318 -21.46671 -20.79249 -19.91974 -19.24583 -18.21987 -16.43876 -16.01359 -15.89381 -15.11476 -15.05566 -14.48159 -14.11260 -13.80416 -13.37213 -13.20547 -12.94175 -12.76554 -12.39987 -12.38605 -12.18222 -11.99544 -11.74742 -11.52554 -11.18657 -10.90410 -10.77871 -10.66469 -10.54374 -10.41314 -10.29149 -10.09534 -9.84473 -9.74731 -9.53102 -9.18833 -8.85658 -8.38520 -7.82375 -7.06831 -5.97847 -3.98574 2.18461 2.75472 3.14124 3.32486 3.40376 3.44939 4.46384 4.67676 4.98769 5.09818 5.14643 5.23625 5.29175 5.29642 5.35550 5.37228 5.47279 5.50625 5.87508 5.89335 5.94274 6.03954 6.12217 6.13259 6.20288 6.24620 6.31694 6.34902 6.42756 6.47181 6.48948 6.63288 6.68354 6.85906 6.92743 6.97227 7.08426 7.33594 7.36428 7.48064 7.90939 8.00734 8.21170 8.35204 8.65073 9.11526 9.65839 11.12318 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.005770 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.405085 B = 4851.665335 C = 5210.157213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.110 3.890 3 C -0.216 4.216 4 C 0.121 3.879 5 N -0.523 5.523 6 C 0.190 3.810 7 C -0.498 4.498 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.097 3.903 16 C -0.168 4.168 17 C -0.115 4.115 18 C -0.133 4.133 19 C -0.115 4.115 20 C 0.056 3.944 21 N -0.311 5.311 22 N -0.382 5.382 23 C 0.105 3.895 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.068 0.932 29 H -0.004 1.004 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.173 0.827 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -13.924 -2.110 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.017 4.017 3 C -0.228 4.228 4 C -0.008 4.008 5 N -0.246 5.246 6 C 0.065 3.935 7 C -0.537 4.537 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.013 4.013 16 C -0.206 4.206 17 C -0.153 4.153 18 C -0.171 4.171 19 C -0.153 4.153 20 C -0.130 4.130 21 N -0.132 5.132 22 N -0.166 5.166 23 C -0.037 4.037 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.014 0.986 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.190 0.810 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.218 -15.284 -2.171 17.042 hybrid contribution -0.623 1.520 0.803 1.829 sum 6.596 -13.764 -1.368 15.324 Atomic orbital electron populations 1.20475 0.87030 1.02814 1.03788 1.20748 0.94570 0.86358 0.99984 1.19800 0.91558 0.95871 1.15523 1.20471 0.95286 0.89638 0.95380 1.62355 1.28851 1.33633 0.99749 1.19767 0.93685 0.82858 0.97156 1.21202 1.09627 0.94685 1.28177 0.91890 1.24977 0.97817 0.95639 0.96238 1.69965 1.40229 0.99727 1.44062 0.86518 0.83069 0.77963 0.80307 1.19735 1.21262 1.21164 1.22090 0.90548 0.95659 0.92970 1.23355 0.97917 0.98121 1.01248 1.22324 0.97851 0.95995 0.99101 1.22578 0.96251 0.97046 1.01214 1.22343 0.95708 0.97051 1.00243 1.23564 0.97608 0.92044 0.99769 1.77261 0.96785 1.12761 1.26392 1.48282 1.03980 1.05606 1.58695 1.21708 1.00621 0.78500 1.02886 0.89624 0.88756 0.92925 0.93959 0.91376 0.98575 0.95879 0.93129 0.90132 0.89282 0.92775 0.92583 0.92896 0.93874 0.90504 0.93510 0.90466 0.81039 0.91261 0.89875 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.09 36.00 0.33 -0.79 16 2 C 0.11 1.60 4.78 -82.26 -0.39 1.21 16 3 C -0.22 -3.36 3.05 -105.05 -0.32 -3.68 16 4 C 0.12 2.11 4.54 -4.98 -0.02 2.09 16 5 N -0.52 -10.47 3.67 -228.18 -0.84 -11.31 16 6 C 0.19 4.73 4.64 -4.98 -0.02 4.71 16 7 C -0.50 -13.51 8.50 -34.44 -0.29 -13.80 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 10 N -0.90 -26.35 13.29 55.43 0.74 -25.62 16 11 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.10 1.85 2.71 -66.60 -0.18 1.66 16 16 C -0.17 -2.83 5.41 -25.03 -0.14 -2.96 16 17 C -0.11 -1.72 6.83 -24.70 -0.17 -1.89 16 18 C -0.13 -2.06 6.10 -25.08 -0.15 -2.21 16 19 C -0.12 -1.98 5.68 -25.62 -0.15 -2.13 16 20 C 0.06 0.82 8.70 -17.37 -0.15 0.66 16 21 N -0.31 -4.68 11.62 30.62 0.36 -4.32 16 22 N -0.38 -5.17 3.70 -63.89 -0.24 -5.41 16 23 C 0.10 0.97 11.27 59.85 0.67 1.65 16 24 H 0.09 1.23 6.50 -51.93 -0.34 0.89 16 25 H 0.09 1.42 7.88 -51.93 -0.41 1.01 16 26 H 0.05 0.56 7.08 -51.93 -0.37 0.19 16 27 H 0.04 0.73 5.65 -51.93 -0.29 0.44 16 28 H 0.07 1.21 7.88 -51.93 -0.41 0.80 16 29 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 30 H 0.02 0.61 7.79 -51.93 -0.40 0.20 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.08 1.79 7.19 -51.93 -0.37 1.42 16 33 H 0.09 1.44 2.80 -51.93 -0.15 1.29 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.20 3.54 -51.93 -0.18 1.02 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.33 3.51 -51.93 -0.18 1.14 16 41 H 0.17 2.20 7.77 -52.48 -0.41 1.79 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.61 7.05 -51.93 -0.37 0.25 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -29.99 325.71 -7.98 -37.96 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.80 Total: 1.47 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.08 Total: -14.08 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.02 Total: -46.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.99 -7.98 -37.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204569919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.039 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds