Wall clock time and date at job start Mon Mar 30 2020 02:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35318 * 126.13035 * 2 1 4 4 C 1.50701 * 126.03858 * 359.97438 * 3 2 1 5 5 N 1.46900 * 109.46814 * 54.30101 * 4 3 2 6 6 C 1.46897 * 110.99760 * 188.42089 * 5 4 3 7 7 C 1.50705 * 109.47252 * 162.07600 * 6 5 4 8 8 H 1.08000 * 119.99643 * 354.17298 * 7 6 5 9 9 C 1.37878 * 120.00013 * 174.18561 * 7 6 5 10 10 N 1.31506 * 119.99988 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99525 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47720 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47105 * 120.00003 * 11 9 7 14 14 H 1.48508 * 109.47084 * 239.99678 * 11 9 7 15 15 C 1.46903 * 111.00062 * 64.46548 * 5 4 3 16 16 C 1.54261 * 110.03266 * 26.24109 * 15 5 4 17 17 C 1.54969 * 104.15968 * 217.13488 * 16 15 5 18 18 C 1.54887 * 102.77431 * 37.88739 * 17 16 15 19 19 C 1.53871 * 110.03510 * 269.01947 * 15 5 4 20 20 C 1.39866 * 107.91995 * 179.97438 * 3 2 1 21 21 N 1.30833 * 108.20847 * 0.02562 * 20 3 2 22 22 N 1.34953 * 126.12554 * 179.97438 * 2 1 3 23 23 C 1.46503 * 126.03464 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47366 * 269.98034 * 1 2 3 25 25 H 1.09005 * 109.47169 * 29.97239 * 1 2 3 26 26 H 1.08996 * 109.47625 * 149.97783 * 1 2 3 27 27 H 1.09000 * 109.46774 * 174.29710 * 4 3 2 28 28 H 1.08995 * 109.47335 * 294.30096 * 4 3 2 29 29 H 1.09005 * 109.47118 * 282.06636 * 6 5 4 30 30 H 1.09001 * 109.47720 * 42.07060 * 6 5 4 31 31 H 0.97000 * 119.99747 * 180.02562 * 10 9 7 32 32 H 1.09002 * 110.01145 * 147.62935 * 15 5 4 33 33 H 1.09000 * 110.48746 * 335.78044 * 16 15 5 34 34 H 1.09000 * 110.48840 * 98.42763 * 16 15 5 35 35 H 1.08994 * 110.71903 * 279.57341 * 17 16 15 36 36 H 1.08997 * 110.92227 * 156.29129 * 17 16 15 37 37 H 1.08999 * 110.48355 * 203.40728 * 18 17 16 38 38 H 1.08998 * 110.60319 * 80.82171 * 18 17 16 39 39 H 1.09001 * 110.03346 * 238.57618 * 19 15 5 40 40 H 1.09001 * 110.02851 * 359.95551 * 19 15 5 41 41 H 1.08005 * 125.90058 * 179.97438 * 20 3 2 42 42 H 1.08995 * 109.47109 * 269.99485 * 23 22 2 43 43 H 1.08995 * 109.47277 * 30.00019 * 23 22 2 44 44 H 1.09002 * 109.46695 * 149.99571 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5276 -0.0005 5 7 0.9236 2.7464 1.1238 6 6 0.2985 4.0732 1.0419 7 6 -0.9287 4.1052 1.9160 8 1 -1.2692 3.2027 2.4019 9 6 -1.6169 5.2864 2.0952 10 7 -1.2021 6.3853 1.5037 11 14 -3.1385 5.3257 3.1781 12 1 -3.3936 3.9681 3.7230 13 1 -2.9245 6.2770 4.2981 14 1 -4.3075 5.7633 2.3735 15 6 1.6116 2.5671 2.4093 16 6 3.1182 2.8562 2.2473 17 6 3.8050 1.8170 3.1692 18 6 2.9285 0.5548 2.9750 19 6 1.4909 1.1046 2.8723 20 6 3.6334 0.6558 0.0006 21 7 3.6334 -0.6525 0.0004 22 7 2.3026 -1.0901 0.0005 23 6 1.8537 -2.4846 0.0006 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5141 27 1 2.7055 3.1865 0.1017 28 1 1.3298 2.7437 -0.9373 29 1 1.0060 4.8298 1.3814 30 1 0.0148 4.2782 0.0096 31 1 -1.6861 7.2164 1.6301 32 1 1.1822 3.2325 3.1583 33 1 3.4256 2.7094 1.2119 34 1 3.3496 3.8697 2.5749 35 1 3.7815 2.1476 4.2075 36 1 4.8295 1.6289 2.8482 37 1 3.0221 -0.1103 3.8334 38 1 3.2042 0.0338 2.0581 39 1 1.0036 1.0603 3.8463 40 1 0.9211 0.5282 2.1435 41 1 4.5084 1.2890 0.0004 42 1 1.7421 -2.8303 1.0282 43 1 0.8955 -2.5580 -0.5136 44 1 2.5898 -3.1032 -0.5130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204569919.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:15 Heat of formation + Delta-G solvation = 80.270363 kcal Electronic energy + Delta-G solvation = -23424.105538 eV Core-core repulsion = 20378.093827 eV Total energy + Delta-G solvation = -3046.011712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.54537 -39.77615 -36.15537 -34.66774 -34.23862 -32.84961 -30.30658 -29.26593 -28.74526 -27.44246 -27.21605 -25.07478 -23.26661 -21.97099 -21.14771 -20.51008 -19.61385 -18.36590 -17.45182 -17.11401 -16.58801 -16.47237 -16.11069 -15.32645 -15.15093 -14.69616 -14.59888 -14.17505 -14.09649 -13.88091 -13.68641 -13.49863 -13.24301 -13.12978 -12.81077 -12.70671 -12.63059 -12.45235 -12.17132 -12.07259 -11.84013 -11.71857 -11.59390 -11.41956 -11.24683 -11.09896 -11.01660 -10.54147 -9.92905 -9.01287 -8.76833 -8.12399 -6.21699 1.07256 1.41912 1.42988 1.55770 1.79240 1.95301 2.44486 3.19048 3.45120 3.76730 3.89290 3.92223 3.98938 4.14788 4.31418 4.44596 4.50147 4.57994 4.60090 4.66344 4.72295 4.74841 4.77269 4.81101 4.87769 4.94721 5.00081 5.07445 5.09404 5.16676 5.22654 5.25465 5.30512 5.35840 5.46329 5.57537 5.60967 5.62589 5.77330 5.82466 6.19509 6.30636 6.56844 6.79731 6.90898 6.97509 7.47970 8.97107 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022052 B = 0.005770 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.405085 B = 4851.665335 C = 5210.157213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.111 3.889 3 C -0.234 4.234 4 C 0.125 3.875 5 N -0.517 5.517 6 C 0.208 3.792 7 C -0.507 4.507 8 H 0.060 0.940 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.962 3.038 12 H -0.264 1.264 13 H -0.283 1.283 14 H -0.279 1.279 15 C 0.094 3.906 16 C -0.165 4.165 17 C -0.107 4.107 18 C -0.125 4.125 19 C -0.110 4.110 20 C 0.055 3.945 21 N -0.322 5.322 22 N -0.377 5.377 23 C 0.093 3.907 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.059 0.941 29 H -0.037 1.037 30 H 0.001 0.999 31 H 0.261 0.739 32 H 0.041 0.959 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.187 0.813 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.179 -16.378 -1.681 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.017 4.017 3 C -0.245 4.245 4 C -0.003 4.003 5 N -0.240 5.240 6 C 0.081 3.919 7 C -0.545 4.545 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.577 5.577 11 Si 0.787 3.213 12 H -0.188 1.188 13 H -0.209 1.209 14 H -0.205 1.205 15 C -0.015 4.015 16 C -0.203 4.203 17 C -0.145 4.145 18 C -0.162 4.162 19 C -0.148 4.148 20 C -0.130 4.130 21 N -0.143 5.143 22 N -0.160 5.160 23 C -0.047 4.047 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.077 0.923 29 H -0.019 1.019 30 H 0.019 0.981 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.204 0.796 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.418 -17.781 -1.742 19.345 hybrid contribution -0.670 2.236 0.629 2.417 sum 6.748 -15.546 -1.113 16.983 Atomic orbital electron populations 1.20423 0.86468 1.03477 1.03364 1.20845 0.94974 0.86662 0.99225 1.19580 0.92515 0.94699 1.17713 1.20399 0.94558 0.91543 0.93814 1.62311 1.30257 1.30193 1.01244 1.19398 0.92825 0.84533 0.95125 1.21458 1.10269 0.94631 1.28191 0.92187 1.25828 1.00952 0.95241 0.97582 1.70091 1.41743 1.00356 1.45548 0.85448 0.79196 0.78248 0.78403 1.18800 1.20945 1.20502 1.22061 0.91716 0.96391 0.91309 1.23300 0.96423 0.98177 1.02384 1.22294 0.98613 0.94850 0.98751 1.22512 0.94639 0.97216 1.01869 1.22273 0.97276 0.95396 0.99885 1.23745 0.97587 0.92195 0.99447 1.77236 0.97722 1.12701 1.26685 1.48579 1.03278 1.06781 1.57351 1.22101 1.02045 0.76317 1.04246 0.90470 0.90861 0.89565 0.93906 0.92303 1.01929 0.98076 0.92977 0.94077 0.88415 0.94109 0.92295 0.90862 0.92581 0.90278 0.93876 0.90296 0.79597 0.90059 0.87675 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.02 9.09 71.23 0.65 -1.37 16 2 C 0.11 3.05 4.78 41.40 0.20 3.25 16 3 C -0.23 -7.04 3.05 -20.14 -0.06 -7.10 16 4 C 0.13 4.47 4.54 85.56 0.39 4.86 16 5 N -0.52 -21.41 3.67 -875.82 -3.22 -24.63 16 6 C 0.21 10.86 4.64 85.56 0.40 11.25 16 7 C -0.51 -28.36 8.50 25.60 0.22 -28.15 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 9 C 0.00 0.08 5.46 84.66 0.46 0.54 16 10 N -0.94 -56.38 13.29 21.45 0.28 -56.09 16 11 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 15 C 0.09 3.68 2.71 45.64 0.12 3.80 16 16 C -0.16 -5.53 5.41 31.69 0.17 -5.36 16 17 C -0.11 -3.02 6.83 31.91 0.22 -2.80 16 18 C -0.12 -3.58 6.10 31.67 0.19 -3.39 16 19 C -0.11 -3.70 5.68 31.32 0.18 -3.52 16 20 C 0.06 1.51 8.70 85.24 0.74 2.26 16 21 N -0.32 -8.85 11.62 -57.02 -0.66 -9.52 16 22 N -0.38 -9.16 3.70 -356.04 -1.32 -10.47 16 23 C 0.09 1.40 11.27 127.77 1.44 2.84 16 24 H 0.08 2.12 6.50 -2.39 -0.02 2.11 16 25 H 0.07 2.20 7.88 -2.38 -0.02 2.18 16 26 H 0.09 1.58 7.08 -2.39 -0.02 1.56 16 27 H 0.04 1.52 5.65 -2.39 -0.01 1.51 16 28 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 29 H -0.04 -2.15 8.03 -2.38 -0.02 -2.17 16 30 H 0.00 0.06 7.79 -2.39 -0.02 0.05 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.04 1.91 7.19 -2.39 -0.02 1.89 16 33 H 0.10 3.12 2.80 -2.39 -0.01 3.11 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 2.27 3.54 -2.39 -0.01 2.26 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 2.62 3.51 -2.39 -0.01 2.62 16 41 H 0.19 4.37 7.77 -2.91 -0.02 4.35 16 42 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.12 7.05 -2.39 -0.02 1.10 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -65.55 325.71 3.42 -62.13 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.99 Total: 15.04 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 5.32 Total: -22.90 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -4.91 Total: -100.71 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.55 3.42 -62.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204569919.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.399 kcal (2) G-P(sol) polarization free energy of solvation -65.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds