Wall clock time and date at job start Mon Mar 30 2020 02:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.89852 * 2 1 4 4 N 1.40083 * 108.20702 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03793 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.92544 * 359.75454 * 4 3 2 7 7 C 1.35318 * 107.74367 * 0.39570 * 6 4 3 8 8 C 1.50699 * 126.04017 * 179.86887 * 7 6 4 9 9 N 1.46900 * 109.47418 * 254.84645 * 8 7 6 10 10 C 1.46896 * 110.99986 * 72.49218 * 9 8 7 11 11 C 1.50701 * 109.47181 * 195.66205 * 10 9 8 12 12 H 1.08000 * 119.99458 * 5.02824 * 11 10 9 13 13 C 1.37871 * 120.00011 * 185.03027 * 11 10 9 14 14 N 1.31513 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00054 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46942 * 89.99690 * 15 13 11 17 17 H 1.48493 * 109.47187 * 210.00189 * 15 13 11 18 18 H 1.48502 * 109.46795 * 329.99892 * 15 13 11 19 19 C 1.46898 * 110.99867 * 196.45167 * 9 8 7 20 20 C 1.54959 * 110.92165 * 312.91769 * 19 9 8 21 21 C 1.54265 * 104.16120 * 156.30078 * 20 19 9 22 22 C 1.53875 * 106.63910 * 336.44959 * 21 20 19 23 23 C 1.54268 * 106.59850 * 359.97350 * 22 21 20 24 24 H 1.09002 * 109.47258 * 274.89749 * 1 2 3 25 25 H 1.08994 * 109.47416 * 34.90131 * 1 2 3 26 26 H 1.09001 * 109.46759 * 154.90382 * 1 2 3 27 27 H 1.09004 * 109.47395 * 89.97303 * 5 4 3 28 28 H 1.08995 * 109.46959 * 209.97333 * 5 4 3 29 29 H 1.09001 * 109.47115 * 329.96818 * 5 4 3 30 30 H 1.07993 * 126.13058 * 180.23405 * 6 4 3 31 31 H 1.09003 * 109.46896 * 134.84107 * 8 7 6 32 32 H 1.09003 * 109.46849 * 14.84475 * 8 7 6 33 33 H 1.09004 * 109.46945 * 315.65939 * 10 9 8 34 34 H 1.08995 * 109.47099 * 75.66109 * 10 9 8 35 35 H 0.97001 * 120.00115 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.66989 * 189.62280 * 19 9 8 37 37 H 1.09001 * 110.47816 * 37.65223 * 20 19 9 38 38 H 1.08996 * 110.53616 * 274.98256 * 20 19 9 39 39 H 1.08995 * 110.03583 * 217.13974 * 21 20 19 40 40 H 1.08996 * 110.03508 * 95.75393 * 21 20 19 41 41 H 1.08997 * 110.03592 * 119.25945 * 22 21 20 42 42 H 1.09008 * 110.03464 * 240.64100 * 22 21 20 43 43 H 1.09003 * 110.48723 * 142.28655 * 23 22 21 44 44 H 1.09000 * 110.48499 * 264.80083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6143 -0.7154 0.0045 7 6 2.3272 -1.1331 -0.0006 8 6 1.8599 -2.5658 -0.0004 9 7 1.3700 -2.9213 -1.3389 10 6 2.4831 -3.0599 -2.2873 11 6 1.9482 -3.0403 -3.6961 12 1 0.8991 -2.8541 -3.8727 13 6 2.7980 -3.2599 -4.7593 14 7 4.0756 -3.4861 -4.5441 15 14 2.1348 -3.2362 -6.5055 16 1 2.2156 -1.8559 -7.0469 17 1 2.9423 -4.1489 -7.3541 18 1 0.7193 -3.6852 -6.5034 19 6 0.5601 -4.1461 -1.2948 20 6 1.2694 -5.2491 -0.4692 21 6 0.1219 -6.1697 -0.0050 22 6 -1.1605 -5.3195 -0.0248 23 6 -0.7481 -3.9109 -0.4998 24 1 -0.3634 0.0877 1.0239 25 1 -0.3634 0.8428 -0.5879 26 1 -0.3633 -0.9307 -0.4359 27 1 5.0828 1.7155 1.0275 28 1 5.6093 0.9984 -0.5142 29 1 4.5563 2.4334 -0.5139 30 1 4.4891 -1.3485 0.0091 31 1 1.0550 -2.6853 0.7248 32 1 2.6906 -3.2188 0.2677 33 1 3.1808 -2.2334 -2.1520 34 1 2.9983 -4.0034 -2.1074 35 1 4.6734 -3.6410 -5.2921 36 1 0.3416 -4.4993 -2.3026 37 1 1.7802 -4.8135 0.3895 38 1 1.9726 -5.8009 -1.0929 39 1 0.3166 -6.5283 1.0057 40 1 0.0209 -7.0136 -0.6873 41 1 -1.8835 -5.7504 -0.7173 42 1 -1.5887 -5.2663 0.9763 43 1 -1.5162 -3.4863 -1.1463 44 1 -0.5659 -3.2585 0.3541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204578288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:18 Heat of formation + Delta-G solvation = 70.792181 kcal Electronic energy + Delta-G solvation = -22561.459280 eV Core-core repulsion = 19515.036564 eV Total energy + Delta-G solvation = -3046.422717 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76923 -38.45692 -34.83367 -33.47043 -32.36864 -30.31784 -29.16786 -28.25036 -27.53391 -26.72681 -24.91804 -23.56516 -21.60328 -20.35844 -19.78962 -19.32890 -18.30597 -16.38528 -16.10526 -15.47693 -15.24968 -14.87728 -14.53743 -13.93750 -13.66161 -13.36552 -13.23758 -12.96596 -12.72646 -12.67006 -12.22976 -11.90045 -11.80391 -11.64540 -11.60401 -11.33730 -10.92565 -10.87337 -10.77853 -10.65266 -10.57670 -10.19801 -10.10975 -9.91952 -9.85309 -9.65608 -9.11860 -8.70144 -8.34787 -7.79539 -7.03616 -5.95756 -3.95084 2.35656 2.94047 3.27708 3.35283 3.41149 3.45131 4.48654 4.80813 4.97896 5.13109 5.16696 5.26083 5.29577 5.39732 5.40649 5.53167 5.55100 5.72383 5.78072 5.89157 5.96915 6.01295 6.02038 6.05424 6.09020 6.16101 6.28427 6.31403 6.36455 6.41042 6.52001 6.56607 6.62748 6.68314 6.82009 7.01635 7.21636 7.43379 7.47764 7.49158 7.91704 8.21587 8.25169 8.36344 8.67620 9.13649 9.68422 11.14699 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.007958 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.776562 B = 3517.514940 C = 5357.207521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.096 3.904 3 N -0.312 5.312 4 N -0.384 5.384 5 C 0.108 3.892 6 C 0.059 3.941 7 C -0.206 4.206 8 C 0.129 3.871 9 N -0.521 5.521 10 C 0.196 3.804 11 C -0.497 4.497 12 H 0.061 0.939 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.892 3.108 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.093 3.907 20 C -0.160 4.160 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.120 4.120 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.166 0.834 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.027 0.973 34 H -0.005 1.005 35 H 0.258 0.742 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 1.878 11.876 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 N -0.136 5.136 4 N -0.166 5.166 5 C -0.033 4.033 6 C -0.087 4.087 7 C -0.218 4.218 8 C 0.000 4.000 9 N -0.244 5.244 10 C 0.071 3.929 11 C -0.536 4.536 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.542 5.542 15 Si 0.721 3.279 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.016 4.016 20 C -0.199 4.199 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.184 0.816 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.446 3.603 11.594 12.621 hybrid contribution 0.657 -1.540 -0.889 1.896 sum -2.789 2.062 10.705 11.253 Atomic orbital electron populations 1.20160 0.87084 1.04031 1.01556 1.22090 0.96649 0.90113 0.98190 1.77168 0.86417 1.23061 1.26926 1.48154 1.05281 1.04620 1.58547 1.21709 0.84187 0.95020 1.02426 1.22264 0.99359 0.84661 1.02419 1.19874 0.91286 0.96354 1.14238 1.20277 0.97443 0.89543 0.92699 1.62146 1.24803 1.31716 1.05703 1.19668 0.87733 0.95533 0.89965 1.21195 0.95283 1.46680 0.90476 0.92038 1.24953 0.94871 0.95772 0.99045 1.69954 1.03264 1.49836 1.31115 0.86586 0.78895 0.77738 0.84721 1.20857 1.21466 1.19856 1.22618 0.91928 0.88155 0.98903 1.23064 0.98003 0.98525 1.00299 1.22026 0.95293 0.98193 1.00217 1.22106 0.97358 0.96304 1.00321 1.22465 0.97947 0.95640 0.99694 0.91709 0.91619 0.89178 0.91532 0.89767 0.89775 0.81648 0.91320 0.95340 0.95528 0.98749 0.93211 0.88726 0.91831 0.91776 0.92830 0.92368 0.92310 0.92622 0.91771 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.30 36.01 0.37 -0.68 16 2 C 0.10 1.76 7.22 -82.40 -0.59 1.17 16 3 N -0.31 -5.88 12.58 33.67 0.42 -5.46 16 4 N -0.38 -6.47 4.01 -68.16 -0.27 -6.75 16 5 C 0.11 1.27 11.47 59.85 0.69 1.95 16 6 C 0.06 1.03 10.76 -17.22 -0.19 0.84 16 7 C -0.21 -3.81 4.86 -105.05 -0.51 -4.32 16 8 C 0.13 2.32 3.59 -4.98 -0.02 2.30 16 9 N -0.52 -10.76 4.39 -227.09 -1.00 -11.76 16 10 C 0.20 4.99 4.50 -4.98 -0.02 4.97 16 11 C -0.50 -13.94 8.37 -34.44 -0.29 -14.23 16 12 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 13 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 14 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.09 1.73 2.80 -65.69 -0.18 1.54 16 20 C -0.16 -2.66 5.56 -25.04 -0.14 -2.80 16 21 C -0.12 -1.63 6.80 -25.61 -0.17 -1.81 16 22 C -0.12 -1.59 6.80 -25.61 -0.17 -1.76 16 23 C -0.12 -1.78 6.33 -25.07 -0.16 -1.94 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.40 7.84 -51.93 -0.41 0.99 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.07 1.10 5.95 -51.93 -0.31 0.79 16 32 H 0.03 0.51 6.83 -51.93 -0.35 0.16 16 33 H 0.03 0.74 6.70 -51.93 -0.35 0.39 16 34 H -0.01 -0.15 7.38 -51.93 -0.38 -0.53 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 2.01 7.25 -51.93 -0.38 1.63 16 37 H 0.06 1.03 5.78 -51.93 -0.30 0.73 16 38 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.93 6.11 -51.93 -0.32 0.62 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -32.03 347.26 -8.79 -40.82 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.40 Total: 0.29 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -1.49 Total: -13.34 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.11 Total: -49.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.03 -8.79 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204578288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.614 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds