Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.89852 * 2 1 4 4 N 1.40083 * 108.20702 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03793 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.92544 * 359.75454 * 4 3 2 7 7 C 1.35318 * 107.74367 * 0.39570 * 6 4 3 8 8 C 1.50699 * 126.04017 * 179.86887 * 7 6 4 9 9 N 1.46900 * 109.47418 * 254.84645 * 8 7 6 10 10 C 1.46896 * 110.99986 * 72.49218 * 9 8 7 11 11 C 1.50701 * 109.47181 * 195.66205 * 10 9 8 12 12 H 1.08000 * 119.99458 * 5.02824 * 11 10 9 13 13 C 1.37871 * 120.00011 * 185.03027 * 11 10 9 14 14 N 1.31513 * 120.00178 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00054 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46942 * 89.99690 * 15 13 11 17 17 H 1.48493 * 109.47187 * 210.00189 * 15 13 11 18 18 H 1.48502 * 109.46795 * 329.99892 * 15 13 11 19 19 C 1.46898 * 110.99867 * 196.45167 * 9 8 7 20 20 C 1.54959 * 110.92165 * 312.91769 * 19 9 8 21 21 C 1.54265 * 104.16120 * 156.30078 * 20 19 9 22 22 C 1.53875 * 106.63910 * 336.44959 * 21 20 19 23 23 C 1.54268 * 106.59850 * 359.97350 * 22 21 20 24 24 H 1.09002 * 109.47258 * 274.89749 * 1 2 3 25 25 H 1.08994 * 109.47416 * 34.90131 * 1 2 3 26 26 H 1.09001 * 109.46759 * 154.90382 * 1 2 3 27 27 H 1.09004 * 109.47395 * 89.97303 * 5 4 3 28 28 H 1.08995 * 109.46959 * 209.97333 * 5 4 3 29 29 H 1.09001 * 109.47115 * 329.96818 * 5 4 3 30 30 H 1.07993 * 126.13058 * 180.23405 * 6 4 3 31 31 H 1.09003 * 109.46896 * 134.84107 * 8 7 6 32 32 H 1.09003 * 109.46849 * 14.84475 * 8 7 6 33 33 H 1.09004 * 109.46945 * 315.65939 * 10 9 8 34 34 H 1.08995 * 109.47099 * 75.66109 * 10 9 8 35 35 H 0.97001 * 120.00115 * 179.97438 * 14 13 11 36 36 H 1.09003 * 110.66989 * 189.62280 * 19 9 8 37 37 H 1.09001 * 110.47816 * 37.65223 * 20 19 9 38 38 H 1.08996 * 110.53616 * 274.98256 * 20 19 9 39 39 H 1.08995 * 110.03583 * 217.13974 * 21 20 19 40 40 H 1.08996 * 110.03508 * 95.75393 * 21 20 19 41 41 H 1.08997 * 110.03592 * 119.25945 * 22 21 20 42 42 H 1.09008 * 110.03464 * 240.64100 * 22 21 20 43 43 H 1.09003 * 110.48723 * 142.28655 * 23 22 21 44 44 H 1.09000 * 110.48499 * 264.80083 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6143 -0.7154 0.0045 7 6 2.3272 -1.1331 -0.0006 8 6 1.8599 -2.5658 -0.0004 9 7 1.3700 -2.9213 -1.3389 10 6 2.4831 -3.0599 -2.2873 11 6 1.9482 -3.0403 -3.6961 12 1 0.8991 -2.8541 -3.8727 13 6 2.7980 -3.2599 -4.7593 14 7 4.0756 -3.4861 -4.5441 15 14 2.1348 -3.2362 -6.5055 16 1 2.2156 -1.8559 -7.0469 17 1 2.9423 -4.1489 -7.3541 18 1 0.7193 -3.6852 -6.5034 19 6 0.5601 -4.1461 -1.2948 20 6 1.2694 -5.2491 -0.4692 21 6 0.1219 -6.1697 -0.0050 22 6 -1.1605 -5.3195 -0.0248 23 6 -0.7481 -3.9109 -0.4998 24 1 -0.3634 0.0877 1.0239 25 1 -0.3634 0.8428 -0.5879 26 1 -0.3633 -0.9307 -0.4359 27 1 5.0828 1.7155 1.0275 28 1 5.6093 0.9984 -0.5142 29 1 4.5563 2.4334 -0.5139 30 1 4.4891 -1.3485 0.0091 31 1 1.0550 -2.6853 0.7248 32 1 2.6906 -3.2188 0.2677 33 1 3.1808 -2.2334 -2.1520 34 1 2.9983 -4.0034 -2.1074 35 1 4.6734 -3.6410 -5.2921 36 1 0.3416 -4.4993 -2.3026 37 1 1.7802 -4.8135 0.3895 38 1 1.9726 -5.8009 -1.0929 39 1 0.3166 -6.5283 1.0057 40 1 0.0209 -7.0136 -0.6873 41 1 -1.8835 -5.7504 -0.7173 42 1 -1.5887 -5.2663 0.9763 43 1 -1.5162 -3.4863 -1.1463 44 1 -0.5659 -3.2585 0.3541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204578288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = 51.180832 kcal Electronic energy + Delta-G solvation = -22562.309692 eV Core-core repulsion = 19515.036564 eV Total energy + Delta-G solvation = -3047.273129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10404 -39.88074 -36.30679 -34.93311 -34.25974 -31.73439 -30.38267 -29.53351 -29.29384 -28.06976 -26.41607 -25.09320 -23.37566 -21.72127 -20.93756 -20.69269 -19.76372 -18.35284 -17.61946 -16.84976 -16.65441 -16.37844 -16.13648 -15.37735 -15.07769 -14.78059 -14.41792 -14.38962 -14.13524 -13.91811 -13.69787 -13.48457 -13.38387 -12.91640 -12.84406 -12.78229 -12.68907 -12.54310 -12.28436 -12.10590 -11.94019 -11.79482 -11.60832 -11.41481 -11.27424 -11.18194 -10.97926 -10.54854 -10.02618 -9.15783 -8.72574 -8.14734 -6.22560 1.01100 1.38202 1.39100 1.49913 1.76780 1.89135 2.41530 3.16785 3.46001 3.72323 3.92020 3.97251 3.98953 4.18561 4.30842 4.38985 4.43988 4.53001 4.64771 4.66053 4.68346 4.69895 4.73853 4.87077 4.88575 4.91674 4.97474 5.07019 5.16823 5.20935 5.23661 5.27145 5.31079 5.35860 5.39929 5.51251 5.56730 5.67171 5.74524 5.90561 6.18624 6.23692 6.57352 6.81671 6.88449 6.96357 7.46084 8.94473 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.010136 B = 0.007958 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.776562 B = 3517.514940 C = 5357.207521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.083 3.917 3 N -0.337 5.337 4 N -0.385 5.385 5 C 0.098 3.902 6 C 0.051 3.949 7 C -0.232 4.232 8 C 0.138 3.862 9 N -0.524 5.524 10 C 0.219 3.781 11 C -0.512 4.512 12 H 0.055 0.945 13 C 0.003 3.997 14 N -0.933 5.933 15 Si 0.957 3.043 16 H -0.279 1.279 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.085 3.915 20 C -0.156 4.156 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.110 4.110 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.179 0.821 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.000 1.000 34 H -0.035 1.035 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 1.921 12.897 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 N -0.161 5.161 4 N -0.167 5.167 5 C -0.042 4.042 6 C -0.096 4.096 7 C -0.244 4.244 8 C 0.010 3.990 9 N -0.247 5.247 10 C 0.092 3.908 11 C -0.550 4.550 12 H 0.073 0.927 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.783 3.217 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.025 4.025 20 C -0.195 4.195 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.147 4.147 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.197 0.803 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.018 0.982 34 H -0.018 1.018 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.807 3.657 12.631 14.001 hybrid contribution 1.155 -1.521 -1.183 2.247 sum -3.652 2.136 11.448 12.204 Atomic orbital electron populations 1.20213 0.85264 1.03706 1.03251 1.22566 0.98050 0.89840 0.97868 1.77097 0.87450 1.23704 1.27895 1.48565 1.05826 1.04915 1.57419 1.22087 0.82939 0.94670 1.04505 1.22582 0.99764 0.85410 1.01813 1.20075 0.91990 0.96639 1.15692 1.20255 0.97992 0.89364 0.91420 1.62059 1.23001 1.33036 1.06563 1.19203 0.88438 0.92688 0.90435 1.21490 0.95011 1.46472 0.92068 0.92687 1.25779 0.95113 0.95377 1.03214 1.70072 1.04404 1.50615 1.32339 0.85566 0.78663 0.77830 0.79687 1.20485 1.20753 1.18930 1.22645 0.93816 0.87922 0.98076 1.22983 0.98547 0.98372 0.99616 1.22010 0.94255 0.97588 1.01331 1.22088 0.96934 0.94332 1.01999 1.22396 0.95497 0.97477 0.99369 0.88999 0.91486 0.89772 0.88884 0.88284 0.89291 0.80348 0.88935 0.95828 0.98200 1.01759 0.93069 0.92314 0.91218 0.94828 0.90600 0.92380 0.91597 0.89893 0.91769 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.90 10.30 71.24 0.73 -1.17 16 2 C 0.08 2.98 7.22 43.10 0.31 3.30 16 3 N -0.34 -12.55 12.58 -47.38 -0.60 -13.15 16 4 N -0.39 -12.79 4.01 -369.57 -1.48 -14.28 16 5 C 0.10 2.17 11.47 127.77 1.47 3.63 16 6 C 0.05 1.80 10.76 83.54 0.90 2.70 16 7 C -0.23 -8.59 4.86 -20.14 -0.10 -8.69 16 8 C 0.14 4.93 3.59 85.56 0.31 5.23 16 9 N -0.52 -22.07 4.39 -872.39 -3.83 -25.90 16 10 C 0.22 11.61 4.50 85.56 0.39 11.99 16 11 C -0.51 -29.57 8.37 25.60 0.21 -29.36 16 12 H 0.05 3.18 7.77 -2.91 -0.02 3.15 16 13 C 0.00 0.15 5.46 84.65 0.46 0.61 16 14 N -0.93 -56.72 13.29 21.44 0.28 -56.44 16 15 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 19 C 0.08 3.15 2.80 46.23 0.13 3.28 16 20 C -0.16 -5.20 5.56 31.69 0.18 -5.02 16 21 C -0.11 -2.88 6.80 31.32 0.21 -2.67 16 22 C -0.12 -2.63 6.80 31.32 0.21 -2.42 16 23 C -0.11 -3.06 6.33 31.67 0.20 -2.86 16 24 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.08 2.51 7.84 -2.39 -0.02 2.49 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.18 5.55 8.06 -2.91 -0.02 5.53 16 31 H 0.09 2.82 5.95 -2.39 -0.01 2.81 16 32 H 0.02 0.86 6.83 -2.39 -0.02 0.85 16 33 H 0.00 0.00 6.70 -2.38 -0.02 -0.02 16 34 H -0.04 -2.05 7.38 -2.39 -0.02 -2.06 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.06 2.59 7.25 -2.39 -0.02 2.57 16 37 H 0.07 2.21 5.78 -2.39 -0.01 2.20 16 38 H 0.03 1.29 7.93 -2.39 -0.02 1.27 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 1.98 6.11 -2.39 -0.01 1.97 16 Total: -1.00 -70.79 347.26 2.98 -67.81 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.96 Total: 15.76 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 5.61 Total: -21.44 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -5.62 Total: -109.76 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.79 2.98 -67.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204578288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.992 kcal (2) G-P(sol) polarization free energy of solvation -70.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds