Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30502 * 125.65093 * 2 1 4 4 C 1.34125 * 109.25561 * 179.73284 * 3 2 1 5 5 C 1.34672 * 108.02200 * 0.39861 * 4 3 2 6 6 C 1.50698 * 126.59381 * 179.87523 * 5 4 3 7 7 N 1.46897 * 109.46976 * 96.63678 * 6 5 4 8 8 C 1.46904 * 110.99904 * 168.11078 * 7 6 5 9 9 C 1.50703 * 109.47143 * 195.71569 * 8 7 6 10 10 H 1.07995 * 119.99689 * 5.00723 * 9 8 7 11 11 C 1.37875 * 120.00142 * 185.01721 * 9 8 7 12 12 N 1.31518 * 119.99686 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47104 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47291 * 119.99578 * 13 11 9 16 16 H 1.48504 * 109.47290 * 239.99801 * 13 11 9 17 17 C 1.46902 * 111.00008 * 292.05844 * 7 6 5 18 18 C 1.54957 * 110.92502 * 328.87940 * 17 7 6 19 19 C 1.54273 * 104.15975 * 156.29349 * 18 17 7 20 20 C 1.53878 * 106.63904 * 336.44685 * 19 18 17 21 21 C 1.54270 * 106.60087 * 359.97438 * 20 19 18 22 22 N 1.35044 * 125.64905 * 179.97438 * 2 1 3 23 23 C 1.46500 * 126.39537 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.46958 * 270.02885 * 1 2 3 25 25 H 1.09003 * 109.46861 * 30.02261 * 1 2 3 26 26 H 1.09002 * 109.46893 * 150.02401 * 1 2 3 27 27 H 1.08001 * 125.99071 * 180.24577 * 4 3 2 28 28 H 1.08995 * 109.46962 * 336.64173 * 6 5 4 29 29 H 1.08994 * 109.47271 * 216.63973 * 6 5 4 30 30 H 1.09004 * 109.46638 * 315.70758 * 8 7 6 31 31 H 1.08992 * 109.47572 * 75.70920 * 8 7 6 32 32 H 0.97002 * 119.99589 * 180.02562 * 12 11 9 33 33 H 1.09000 * 110.67195 * 205.57148 * 17 7 6 34 34 H 1.08999 * 110.47542 * 37.64505 * 18 17 7 35 35 H 1.08996 * 110.53419 * 274.97070 * 18 17 7 36 36 H 1.08995 * 110.03295 * 217.14033 * 19 18 17 37 37 H 1.09001 * 110.03084 * 95.75063 * 19 18 17 38 38 H 1.09005 * 110.02901 * 119.25564 * 20 19 18 39 39 H 1.08996 * 110.03414 * 240.63818 * 20 19 18 40 40 H 1.09001 * 110.48684 * 142.28437 * 21 20 19 41 41 H 1.08998 * 110.48123 * 264.79860 * 21 20 19 42 42 H 1.09003 * 109.46833 * 269.99799 * 23 22 2 43 43 H 1.08991 * 109.47108 * 30.00171 * 23 22 2 44 44 H 1.09000 * 109.47118 * 150.00099 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6819 0.0059 5 6 3.5926 -0.6643 0.0008 6 6 4.8276 -1.5279 0.0019 7 7 5.1322 -1.9451 1.3770 8 6 6.1487 -3.0055 1.3926 9 6 6.1595 -3.6713 2.7445 10 1 5.4262 -3.3957 3.4879 11 6 7.1057 -4.6320 3.0323 12 7 7.9984 -4.9676 2.1268 13 14 7.1195 -5.4567 4.7083 14 1 6.0201 -4.9053 5.5404 15 1 6.9285 -6.9200 4.5415 16 1 8.4212 -5.2002 5.3755 17 6 5.5544 -0.7991 2.1935 18 6 6.2866 0.2572 1.3279 19 6 6.1145 1.5738 2.1134 20 6 4.8681 1.3989 2.9987 21 6 4.3250 -0.0180 2.7204 22 7 2.2941 -1.0974 0.0005 23 6 1.8425 -2.4910 0.0006 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.4099 1.3410 0.0111 28 1 5.6674 -0.9614 -0.4004 29 1 4.6550 -2.4095 -0.6155 30 1 5.9150 -3.7441 0.6257 31 1 7.1288 -2.5723 1.1930 32 1 8.6639 -5.6438 2.3292 33 1 6.1866 -1.1268 3.0188 34 1 5.8201 0.3352 0.3459 35 1 7.3429 0.0063 1.2308 36 1 5.9683 2.4042 1.4227 37 1 6.9914 1.7551 2.7349 38 1 5.1404 1.4945 4.0499 39 1 4.1175 2.1451 2.7383 40 1 3.9506 -0.4702 3.6387 41 1 3.5398 0.0161 1.9652 42 1 1.7302 -2.8364 1.0283 43 1 0.8841 -2.5624 -0.5136 44 1 2.5773 -3.1111 -0.5128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206793973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = 71.959467 kcal Electronic energy + Delta-G solvation = -23083.328122 eV Core-core repulsion = 20036.956022 eV Total energy + Delta-G solvation = -3046.372099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07437 -38.52089 -34.85030 -33.65684 -32.73443 -31.60959 -28.78411 -28.14099 -27.39215 -26.73348 -25.81981 -23.65999 -21.62482 -20.84986 -19.75264 -19.43633 -18.57170 -16.78299 -16.12935 -15.81345 -15.23423 -15.08252 -14.66867 -14.18739 -13.84392 -13.50132 -13.24183 -13.14587 -12.86769 -12.59548 -12.45749 -12.28664 -12.16218 -11.98955 -11.93654 -11.37761 -11.01577 -10.81231 -10.78243 -10.68980 -10.50611 -10.29005 -9.96481 -9.87303 -9.77514 -9.52345 -9.29429 -9.21907 -8.47315 -7.70661 -7.23292 -6.06304 -4.07604 2.32181 3.06542 3.27758 3.35742 3.39950 3.42166 4.39794 4.65605 4.86603 4.91188 4.98725 5.20092 5.20598 5.27591 5.29089 5.34282 5.45009 5.54276 5.62436 5.66361 5.70817 5.84772 5.89517 5.98940 6.05291 6.13136 6.17036 6.20444 6.29655 6.38064 6.42289 6.52492 6.66691 6.81801 6.88364 6.99391 7.07347 7.21626 7.34711 7.48891 7.80474 8.05196 8.18077 8.39466 8.50066 9.01792 9.57156 11.03936 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.005861 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.358313 B = 4776.136436 C = 5486.350688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.182 3.818 3 N -0.492 5.492 4 C -0.030 4.030 5 C 0.012 3.988 6 C 0.113 3.887 7 N -0.524 5.524 8 C 0.193 3.807 9 C -0.503 4.503 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.285 1.285 17 C 0.095 3.905 18 C -0.169 4.169 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.127 4.127 22 N -0.443 5.443 23 C 0.076 3.924 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.165 0.835 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.024 0.976 31 H -0.001 1.001 32 H 0.260 0.740 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 8.551 -4.532 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 N -0.212 5.212 4 C -0.178 4.178 5 C -0.104 4.104 6 C -0.016 4.016 7 N -0.247 5.247 8 C 0.068 3.932 9 C -0.541 4.541 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.014 4.014 18 C -0.207 4.207 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.165 4.165 22 N -0.126 5.126 23 C -0.067 4.067 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.183 0.817 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.017 0.983 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.367 8.852 -4.356 15.051 hybrid contribution 1.311 -1.151 0.650 1.861 sum -10.057 7.701 -3.706 13.198 Atomic orbital electron populations 1.20080 0.85610 1.03278 1.03045 1.23041 0.95286 0.81657 1.07900 1.70168 1.02156 1.28338 1.20495 1.21994 0.94446 0.92135 1.09224 1.21229 0.85378 0.95178 1.08611 1.20624 0.91126 0.96608 0.93269 1.62225 1.45945 1.09433 1.07080 1.19766 0.87662 0.87905 0.97868 1.21165 1.13846 1.20221 0.98900 0.91891 1.24972 0.95426 0.96999 0.97137 1.69967 1.17744 1.32219 1.33907 0.86483 0.77871 0.79183 0.84153 1.19694 1.21067 1.21093 1.22568 0.94417 0.88456 0.95955 1.23278 1.00851 0.96205 1.00409 1.21988 0.97846 0.97300 0.98225 1.22042 0.97004 0.97826 0.98878 1.22749 0.99116 0.93462 1.01193 1.45022 1.06116 1.07467 1.54030 1.21975 1.00898 0.79649 1.04133 0.90630 0.89728 0.91330 0.81743 0.92033 0.91039 0.95837 0.98326 0.93000 0.89069 0.90338 0.92162 0.92627 0.92461 0.92791 0.92467 0.93057 0.89723 0.90025 0.90351 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.19 36.01 0.37 -0.24 16 2 C 0.18 2.63 7.84 -155.41 -1.22 1.41 16 3 N -0.49 -8.17 11.25 -10.81 -0.12 -8.29 16 4 C -0.03 -0.48 8.16 -17.81 -0.15 -0.63 16 5 C 0.01 0.20 4.40 -81.60 -0.36 -0.16 16 6 C 0.11 1.97 4.76 -4.98 -0.02 1.95 16 7 N -0.52 -10.71 4.44 -227.09 -1.01 -11.72 16 8 C 0.19 4.77 4.69 -4.97 -0.02 4.75 16 9 C -0.50 -13.68 8.34 -34.44 -0.29 -13.96 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 12 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 13 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.10 1.84 2.71 -65.68 -0.18 1.66 16 18 C -0.17 -2.81 5.05 -25.03 -0.13 -2.93 16 19 C -0.12 -1.69 6.30 -25.61 -0.16 -1.85 16 20 C -0.12 -1.83 6.71 -25.61 -0.17 -2.00 16 21 C -0.13 -2.26 5.78 -25.07 -0.14 -2.40 16 22 N -0.44 -6.50 3.15 -116.68 -0.37 -6.87 16 23 C 0.08 0.89 10.80 59.85 0.65 1.54 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.53 7.07 -51.93 -0.37 0.16 16 27 H 0.17 2.57 5.78 -52.49 -0.30 2.27 16 28 H 0.06 1.05 5.54 -51.93 -0.29 0.76 16 29 H 0.07 1.23 7.12 -51.93 -0.37 0.86 16 30 H 0.02 0.61 7.79 -51.93 -0.40 0.21 16 31 H 0.00 -0.03 8.05 -51.93 -0.42 -0.45 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 2.03 7.15 -51.93 -0.37 1.65 16 34 H 0.08 1.25 2.89 -51.93 -0.15 1.10 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.73 8.05 -51.93 -0.42 0.32 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.53 3.68 -51.93 -0.19 1.34 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.66 7.04 -51.93 -0.37 0.30 16 44 H 0.09 1.04 7.35 -51.93 -0.38 0.66 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -30.49 332.93 -9.64 -40.13 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.95 Total: 2.15 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.92 Total: -11.43 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.76 Total: -52.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.49 -9.64 -40.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206793973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.087 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds