Wall clock time and date at job start Mon Mar 30 2020 02:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30502 * 125.65093 * 2 1 4 4 C 1.34125 * 109.25561 * 179.73284 * 3 2 1 5 5 C 1.34672 * 108.02200 * 0.39861 * 4 3 2 6 6 C 1.50698 * 126.59381 * 179.87523 * 5 4 3 7 7 N 1.46897 * 109.46976 * 96.63678 * 6 5 4 8 8 C 1.46904 * 110.99904 * 168.11078 * 7 6 5 9 9 C 1.50703 * 109.47143 * 195.71569 * 8 7 6 10 10 H 1.07995 * 119.99689 * 5.00723 * 9 8 7 11 11 C 1.37875 * 120.00142 * 185.01721 * 9 8 7 12 12 N 1.31518 * 119.99686 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00241 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47104 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47291 * 119.99578 * 13 11 9 16 16 H 1.48504 * 109.47290 * 239.99801 * 13 11 9 17 17 C 1.46902 * 111.00008 * 292.05844 * 7 6 5 18 18 C 1.54957 * 110.92502 * 328.87940 * 17 7 6 19 19 C 1.54273 * 104.15975 * 156.29349 * 18 17 7 20 20 C 1.53878 * 106.63904 * 336.44685 * 19 18 17 21 21 C 1.54270 * 106.60087 * 359.97438 * 20 19 18 22 22 N 1.35044 * 125.64905 * 179.97438 * 2 1 3 23 23 C 1.46500 * 126.39537 * 0.02562 * 22 2 1 24 24 H 1.09003 * 109.46958 * 270.02885 * 1 2 3 25 25 H 1.09003 * 109.46861 * 30.02261 * 1 2 3 26 26 H 1.09002 * 109.46893 * 150.02401 * 1 2 3 27 27 H 1.08001 * 125.99071 * 180.24577 * 4 3 2 28 28 H 1.08995 * 109.46962 * 336.64173 * 6 5 4 29 29 H 1.08994 * 109.47271 * 216.63973 * 6 5 4 30 30 H 1.09004 * 109.46638 * 315.70758 * 8 7 6 31 31 H 1.08992 * 109.47572 * 75.70920 * 8 7 6 32 32 H 0.97002 * 119.99589 * 180.02562 * 12 11 9 33 33 H 1.09000 * 110.67195 * 205.57148 * 17 7 6 34 34 H 1.08999 * 110.47542 * 37.64505 * 18 17 7 35 35 H 1.08996 * 110.53419 * 274.97070 * 18 17 7 36 36 H 1.08995 * 110.03295 * 217.14033 * 19 18 17 37 37 H 1.09001 * 110.03084 * 95.75063 * 19 18 17 38 38 H 1.09005 * 110.02901 * 119.25564 * 20 19 18 39 39 H 1.08996 * 110.03414 * 240.63818 * 20 19 18 40 40 H 1.09001 * 110.48684 * 142.28437 * 21 20 19 41 41 H 1.08998 * 110.48123 * 264.79860 * 21 20 19 42 42 H 1.09003 * 109.46833 * 269.99799 * 23 22 2 43 43 H 1.08991 * 109.47108 * 30.00171 * 23 22 2 44 44 H 1.09000 * 109.47118 * 150.00099 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6819 0.0059 5 6 3.5926 -0.6643 0.0008 6 6 4.8276 -1.5279 0.0019 7 7 5.1322 -1.9451 1.3770 8 6 6.1487 -3.0055 1.3926 9 6 6.1595 -3.6713 2.7445 10 1 5.4262 -3.3957 3.4879 11 6 7.1057 -4.6320 3.0323 12 7 7.9984 -4.9676 2.1268 13 14 7.1195 -5.4567 4.7083 14 1 6.0201 -4.9053 5.5404 15 1 6.9285 -6.9200 4.5415 16 1 8.4212 -5.2002 5.3755 17 6 5.5544 -0.7991 2.1935 18 6 6.2866 0.2572 1.3279 19 6 6.1145 1.5738 2.1134 20 6 4.8681 1.3989 2.9987 21 6 4.3250 -0.0180 2.7204 22 7 2.2941 -1.0974 0.0005 23 6 1.8425 -2.4910 0.0006 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.4099 1.3410 0.0111 28 1 5.6674 -0.9614 -0.4004 29 1 4.6550 -2.4095 -0.6155 30 1 5.9150 -3.7441 0.6257 31 1 7.1288 -2.5723 1.1930 32 1 8.6639 -5.6438 2.3292 33 1 6.1866 -1.1268 3.0188 34 1 5.8201 0.3352 0.3459 35 1 7.3429 0.0063 1.2308 36 1 5.9683 2.4042 1.4227 37 1 6.9914 1.7551 2.7349 38 1 5.1404 1.4945 4.0499 39 1 4.1175 2.1451 2.7383 40 1 3.9506 -0.4702 3.6387 41 1 3.5398 0.0161 1.9652 42 1 1.7302 -2.8364 1.0283 43 1 0.8841 -2.5624 -0.5136 44 1 2.5773 -3.1111 -0.5128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206793973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:44 Heat of formation + Delta-G solvation = 53.935343 kcal Electronic energy + Delta-G solvation = -23084.109706 eV Core-core repulsion = 20036.956022 eV Total energy + Delta-G solvation = -3047.153684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.26253 -39.99603 -36.40308 -34.88842 -34.56776 -32.85793 -30.20053 -29.55400 -28.89223 -27.85791 -27.31178 -25.20404 -23.41834 -22.10840 -21.07032 -20.63005 -19.97679 -18.49156 -17.79014 -17.12902 -16.65338 -16.49336 -16.32852 -15.59055 -15.15805 -14.91381 -14.64707 -14.18562 -14.14934 -14.03240 -13.77073 -13.63344 -13.44543 -13.14561 -12.98883 -12.93821 -12.81876 -12.53669 -12.37220 -12.14231 -12.05274 -11.84266 -11.70485 -11.38278 -11.24449 -11.12257 -10.80193 -10.61102 -10.38841 -9.01515 -8.85619 -8.19933 -6.29582 1.13090 1.37946 1.39482 1.52143 1.99083 2.21107 2.39456 3.11855 3.31151 3.66377 3.78933 3.83716 3.90152 4.02034 4.07733 4.27680 4.34445 4.38377 4.50499 4.55544 4.60543 4.69265 4.71821 4.77496 4.81838 4.85842 4.89950 4.95971 5.02945 5.10822 5.12526 5.17344 5.19759 5.26301 5.38105 5.46998 5.57020 5.59163 5.69899 5.85091 6.08000 6.37526 6.42722 6.62843 6.87142 7.21793 7.40058 8.89720 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.005861 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.358313 B = 4776.136436 C = 5486.350688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.190 3.810 3 N -0.520 5.520 4 C -0.029 4.029 5 C -0.007 4.007 6 C 0.118 3.882 7 N -0.526 5.526 8 C 0.211 3.789 9 C -0.514 4.514 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.962 3.038 14 H -0.268 1.268 15 H -0.277 1.277 16 H -0.280 1.280 17 C 0.092 3.908 18 C -0.162 4.162 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.121 4.121 22 N -0.448 5.448 23 C 0.072 3.928 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.168 0.832 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.005 0.995 31 H -0.030 1.030 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 9.395 -4.279 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 N -0.240 5.240 4 C -0.177 4.177 5 C -0.123 4.123 6 C -0.010 4.010 7 N -0.249 5.249 8 C 0.085 3.915 9 C -0.553 4.553 10 H 0.072 0.928 11 C -0.192 4.192 12 N -0.572 5.572 13 Si 0.787 3.213 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.206 1.206 17 C -0.017 4.017 18 C -0.201 4.201 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.159 4.159 22 N -0.130 5.130 23 C -0.070 4.070 24 H 0.105 0.895 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.186 0.814 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.023 0.977 31 H -0.012 1.012 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.178 9.701 -4.105 16.870 hybrid contribution 1.804 -1.406 0.529 2.348 sum -11.373 8.295 -3.576 14.524 Atomic orbital electron populations 1.20299 0.82344 1.05070 1.04272 1.23923 0.97005 0.80971 1.05289 1.70197 1.02270 1.29452 1.22126 1.22070 0.94852 0.92071 1.08702 1.20926 0.85669 0.95000 1.10670 1.20536 0.92198 0.96925 0.91366 1.62146 1.44092 1.09472 1.09215 1.19377 0.87355 0.88551 0.96233 1.21386 1.13713 1.20546 0.99646 0.92766 1.25788 0.94974 0.97567 1.00834 1.70075 1.18414 1.32879 1.35878 0.85445 0.77973 0.78269 0.79599 1.19252 1.20220 1.20560 1.22503 0.95186 0.88757 0.95285 1.23203 0.99636 0.96516 1.00737 1.21968 0.97839 0.96562 0.98337 1.21996 0.97366 0.96165 0.99521 1.22682 0.98268 0.94641 1.00264 1.45220 1.05558 1.08651 1.53597 1.22160 1.02564 0.78091 1.04135 0.89542 0.88835 0.88681 0.81446 0.91763 0.91214 0.97717 1.01243 0.92737 0.92685 0.89410 0.93493 0.90412 0.91749 0.92081 0.91433 0.94602 0.89638 0.90781 0.86449 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.19 71.24 0.73 -0.28 16 2 C 0.19 5.04 7.84 138.13 1.08 6.13 16 3 N -0.52 -16.32 11.25 -188.12 -2.12 -18.43 16 4 C -0.03 -0.90 8.16 83.52 0.68 -0.22 16 5 C -0.01 -0.21 4.40 40.95 0.18 -0.03 16 6 C 0.12 4.21 4.76 85.56 0.41 4.62 16 7 N -0.53 -22.25 4.44 -872.38 -3.87 -26.13 16 8 C 0.21 10.93 4.69 85.56 0.40 11.33 16 9 C -0.51 -28.89 8.34 25.60 0.21 -28.68 16 10 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 11 C 0.01 0.36 5.46 84.65 0.46 0.83 16 12 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 13 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 C 0.09 3.63 2.71 46.23 0.13 3.76 16 18 C -0.16 -5.42 5.05 31.70 0.16 -5.26 16 19 C -0.11 -3.02 6.30 31.32 0.20 -2.82 16 20 C -0.11 -3.27 6.71 31.32 0.21 -3.06 16 21 C -0.12 -4.25 5.78 31.67 0.18 -4.07 16 22 N -0.45 -12.46 3.15 -523.05 -1.65 -14.11 16 23 C 0.07 1.58 10.80 127.77 1.38 2.96 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.09 1.05 7.07 -2.39 -0.02 1.03 16 27 H 0.17 5.00 5.78 -2.91 -0.02 4.98 16 28 H 0.06 2.24 5.54 -2.39 -0.01 2.22 16 29 H 0.07 2.46 7.12 -2.39 -0.02 2.45 16 30 H 0.00 0.26 7.79 -2.38 -0.02 0.24 16 31 H -0.03 -1.72 8.05 -2.39 -0.02 -1.73 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.05 2.56 7.15 -2.39 -0.02 2.55 16 34 H 0.09 2.77 2.89 -2.39 -0.01 2.76 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 3.04 3.68 -2.39 -0.01 3.03 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.12 1.60 7.04 -2.39 -0.02 1.58 16 44 H 0.08 1.85 7.35 -2.39 -0.02 1.83 16 Total: -1.00 -66.76 332.93 2.07 -64.69 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.98 Total: 17.42 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 6.41 Total: -14.80 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -7.35 Total: -113.61 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -66.76 2.07 -64.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206793973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.626 kcal (2) G-P(sol) polarization free energy of solvation -66.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds