Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36932 * 120.00368 * 2 1 4 4 H 1.08001 * 120.00331 * 202.33796 * 3 2 1 5 5 C 1.38814 * 119.99598 * 22.34297 * 3 2 1 6 6 N 1.31614 * 120.00257 * 11.34885 * 5 3 2 7 7 Si 1.86805 * 119.99987 * 191.35639 * 5 3 2 8 8 H 1.48508 * 109.46892 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47114 * 119.99324 * 7 5 3 10 10 H 1.48498 * 109.47236 * 239.99840 * 7 5 3 11 11 C 1.46509 * 120.00093 * 179.97438 * 2 1 3 12 12 C 1.52991 * 109.47333 * 270.00697 * 11 2 1 13 13 C 1.53002 * 109.47214 * 179.97438 * 12 11 2 14 14 C 1.53001 * 109.47186 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47186 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.47176 * 179.97438 * 15 14 13 17 17 C 1.42900 * 113.99780 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.46887 * 180.02562 * 17 16 15 19 19 C 1.38228 * 120.00199 * 89.99978 * 18 17 16 20 20 C 1.38234 * 120.00213 * 179.97438 * 19 18 17 21 21 C 1.38240 * 119.99756 * 359.97438 * 20 19 18 22 22 C 1.38235 * 119.99683 * 0.27898 * 21 20 19 23 23 C 1.38232 * 119.99498 * 269.97425 * 18 17 16 24 24 H 1.08998 * 109.47491 * 274.20735 * 1 2 3 25 25 H 1.08994 * 109.46952 * 34.21230 * 1 2 3 26 26 H 1.09006 * 109.46881 * 154.20638 * 1 2 3 27 27 H 0.97001 * 120.00288 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47151 * 150.00046 * 11 2 1 29 29 H 1.09005 * 109.46433 * 30.00409 * 11 2 1 30 30 H 1.09001 * 109.47534 * 59.99584 * 12 11 2 31 31 H 1.09003 * 109.47161 * 300.00063 * 12 11 2 32 32 H 1.09001 * 109.47179 * 59.99404 * 13 12 11 33 33 H 1.08994 * 109.46918 * 299.99568 * 13 12 11 34 34 H 1.08998 * 109.47029 * 59.99700 * 14 13 12 35 35 H 1.09001 * 109.46687 * 299.99312 * 14 13 12 36 36 H 1.09001 * 109.47179 * 59.99432 * 15 14 13 37 37 H 1.08998 * 109.46695 * 300.00041 * 15 14 13 38 38 H 1.08998 * 109.47460 * 60.00121 * 17 16 15 39 39 H 1.09005 * 109.47098 * 299.99410 * 17 16 15 40 40 H 1.08006 * 120.00447 * 359.97007 * 19 18 17 41 41 H 1.07997 * 120.00117 * 179.97438 * 20 19 18 42 42 H 1.07993 * 119.99886 * 180.02562 * 21 20 19 43 43 H 1.08004 * 119.99423 * 179.72710 * 22 21 20 44 44 H 1.08003 * 120.00554 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5338 2.3428 0.4570 6 7 0.3842 2.2690 1.0935 7 14 2.3365 4.0047 0.1684 8 1 3.6143 3.8166 -0.5646 9 1 1.4266 4.8614 -0.6337 10 1 2.6072 4.6572 1.4747 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 6 3.2169 -3.0353 1.4437 14 6 3.4723 -3.4761 2.8864 15 6 4.2373 -4.8011 2.8870 16 8 4.4764 -5.2125 4.2344 17 6 5.1893 -6.4458 4.3477 18 6 5.3840 -6.7815 5.8039 19 6 4.4369 -7.5345 6.4723 20 6 4.6157 -7.8429 7.8078 21 6 5.7421 -7.3986 8.4749 22 6 6.6866 -6.6412 7.8079 23 6 6.5101 -6.3368 6.4710 24 1 -0.3634 0.0754 1.0249 25 1 -0.3633 0.8498 -0.5778 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0464 3.0776 1.4126 28 1 3.1500 -1.1387 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 1.5000 -1.8400 1.9571 31 1 3.0414 -0.9501 1.9568 32 1 4.1693 -2.9056 0.9297 33 1 2.6274 -3.7949 0.9303 34 1 2.5201 -3.6057 3.4007 35 1 4.0620 -2.7164 3.3994 36 1 5.1896 -4.6711 2.3727 37 1 3.6481 -5.5610 2.3738 38 1 6.1611 -6.3496 3.8636 39 1 4.6199 -7.2403 3.8651 40 1 3.5570 -7.8819 5.9510 41 1 3.8755 -8.4308 8.3301 42 1 5.8820 -7.6399 9.5182 43 1 7.5645 -6.2904 8.3302 44 1 7.2505 -5.7492 5.9486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208812154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = -35.096472 kcal Electronic energy + Delta-G solvation = -20099.357376 eV Core-core repulsion = 17016.050232 eV Total energy + Delta-G solvation = -3083.307144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30006 -38.83075 -37.90922 -35.83471 -33.49526 -32.72378 -31.80739 -30.69086 -27.95715 -27.32127 -26.23303 -23.87298 -23.49629 -22.40991 -21.92713 -21.70789 -18.74567 -17.84232 -17.40624 -17.31085 -16.81557 -16.33570 -16.31085 -15.64414 -15.42791 -15.19139 -14.93488 -14.56163 -14.30035 -13.93021 -13.75626 -13.58426 -13.31457 -13.02671 -12.91020 -12.69650 -12.61706 -12.35708 -12.15476 -12.01707 -11.95287 -11.92692 -11.77287 -11.68403 -11.59485 -11.27157 -10.64557 -10.57106 -9.84151 -9.77628 -8.77218 -7.82043 -5.29555 0.32424 0.48090 1.45715 1.45970 1.57114 2.51261 2.57523 3.10924 3.32033 3.71951 3.88023 3.90187 4.01123 4.13305 4.19459 4.27778 4.30189 4.32973 4.35775 4.42175 4.53094 4.63403 4.70426 4.72960 4.76216 4.84415 4.92917 5.02112 5.04993 5.06471 5.12913 5.14180 5.30410 5.35862 5.50230 5.53194 5.56845 5.59228 5.65342 5.66984 5.74708 6.08085 6.26512 6.35203 7.16702 7.90142 8.33345 9.22253 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.002258 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.813748 B =12394.876363 C =12768.777355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.626 5.626 3 C -0.258 4.258 4 H 0.072 0.928 5 C -0.061 4.061 6 N -0.943 5.943 7 Si 0.970 3.030 8 H -0.265 1.265 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.147 3.853 12 C -0.125 4.125 13 C -0.099 4.099 14 C -0.114 4.114 15 C 0.066 3.934 16 O -0.408 6.408 17 C 0.100 3.900 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.116 4.116 24 H -0.001 1.001 25 H 0.017 0.983 26 H 0.031 0.969 27 H 0.247 0.753 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.130 0.870 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -23.342 9.628 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.349 5.349 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.255 4.255 6 N -0.590 5.590 7 Si 0.798 3.202 8 H -0.189 1.189 9 H -0.217 1.217 10 H -0.220 1.220 11 C 0.022 3.978 12 C -0.165 4.165 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.010 4.010 16 O -0.329 6.329 17 C 0.024 3.976 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.134 4.134 24 H 0.018 0.982 25 H 0.035 0.965 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.508 -23.122 9.802 27.626 hybrid contribution 0.038 1.215 -0.014 1.215 sum 11.546 -21.908 9.788 26.628 Atomic orbital electron populations 1.20525 0.82917 0.95939 0.97337 1.44309 1.02253 1.02119 1.86221 1.19606 0.98047 0.86687 1.34473 0.91069 1.25848 0.98600 1.02055 0.99023 1.70253 1.19387 1.27282 1.42101 0.85151 0.78124 0.79899 0.76992 1.18893 1.21717 1.22044 1.21051 0.95687 0.86496 0.94594 1.22010 0.98759 0.96402 0.99326 1.21357 1.00717 0.96193 0.95422 1.21466 1.00094 0.95970 0.97635 1.22576 0.99569 0.96043 0.82795 1.87941 1.77050 1.40066 1.27839 1.21423 0.96789 0.86445 0.92955 1.19855 0.95953 0.99506 0.95705 1.21320 0.98470 0.98094 0.95389 1.21481 0.98560 1.00507 0.94427 1.21558 0.94068 0.97330 1.01053 1.21476 1.00394 0.98748 0.94407 1.21320 0.97660 0.98982 0.95402 0.98244 0.96461 0.95106 0.94412 0.93320 0.92287 0.94604 0.95041 0.90937 0.90390 0.92476 0.92865 0.92035 0.91748 0.91382 0.91245 0.85185 0.83952 0.83756 0.84033 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 9.01 127.77 1.15 10.36 16 2 N -0.63 -32.68 2.93 -726.94 -2.13 -34.80 16 3 C -0.26 -14.63 9.67 84.03 0.81 -13.82 16 4 H 0.07 3.91 7.84 -2.91 -0.02 3.88 16 5 C -0.06 -3.54 5.13 84.86 0.44 -3.10 16 6 N -0.94 -57.86 10.58 21.65 0.23 -57.63 16 7 Si 0.97 46.38 29.57 68.60 2.03 48.41 16 8 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 9 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 11 C 0.15 6.01 5.71 86.37 0.49 6.50 16 12 C -0.12 -4.71 5.54 30.59 0.17 -4.54 16 13 C -0.10 -2.66 5.21 30.60 0.16 -2.50 16 14 C -0.11 -3.02 5.58 30.60 0.17 -2.85 16 15 C 0.07 1.42 5.94 71.98 0.43 1.85 16 16 O -0.41 -10.16 10.33 -148.98 -1.54 -11.69 16 17 C 0.10 1.87 6.06 71.24 0.43 2.30 16 18 C -0.11 -2.18 5.51 -19.87 -0.11 -2.29 16 19 C -0.11 -2.08 9.70 22.27 0.22 -1.87 16 20 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 21 C -0.12 -1.78 10.05 22.27 0.22 -1.55 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 23 C -0.12 -2.13 9.70 22.27 0.22 -1.91 16 24 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 25 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 26 H 0.03 1.34 7.84 -2.38 -0.02 1.32 16 27 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 28 H 0.05 1.90 8.03 -2.39 -0.02 1.89 16 29 H 0.06 2.12 7.86 -2.38 -0.02 2.10 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 39 H 0.07 1.07 8.09 -2.38 -0.02 1.06 16 40 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 44 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -69.01 363.74 4.76 -64.25 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: 0.92 Total: 8.57 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 5.25 Total: -17.11 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -1.90 Total: -92.43 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.54 Total: -11.69 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.01 4.76 -64.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208812154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.155 kcal (2) G-P(sol) polarization free energy of solvation -69.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds